Wall clock time and date at job start Mon Mar 30 2020 03:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50703 * 110.01927 * 2 1 4 4 O 1.21277 * 119.99808 * 235.02389 * 3 2 1 5 5 N 1.34781 * 119.99633 * 55.01630 * 3 2 1 6 6 C 1.46497 * 119.99397 * 179.97438 * 5 3 2 7 7 C 1.50703 * 109.47105 * 180.02562 * 6 5 3 8 8 H 1.08007 * 119.99321 * 0.02562 * 7 6 5 9 9 C 1.37873 * 120.00524 * 180.02562 * 7 6 5 10 10 N 1.31519 * 119.99438 * 359.97438 * 9 7 6 11 11 Si 1.86795 * 120.00321 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.47155 * 359.97438 * 11 9 7 13 13 H 1.48495 * 109.47216 * 119.99788 * 11 9 7 14 14 H 1.48500 * 109.47054 * 240.00193 * 11 9 7 15 15 C 1.54269 * 110.03310 * 238.55444 * 2 1 3 16 16 C 1.54885 * 104.19751 * 264.32816 * 15 2 1 17 17 C 1.54883 * 102.74911 * 322.05764 * 16 15 2 18 18 C 1.53881 * 110.03158 * 121.39172 * 2 1 3 19 19 H 1.09001 * 110.02989 * 359.94973 * 18 2 1 20 20 N 1.46901 * 110.02892 * 238.56980 * 18 2 1 21 21 H 1.08996 * 109.47129 * 298.61259 * 1 2 3 22 22 H 1.09007 * 109.46972 * 58.61163 * 1 2 3 23 23 H 1.08999 * 109.47480 * 178.60969 * 1 2 3 24 24 H 0.96991 * 120.00329 * 0.02562 * 5 3 2 25 25 H 1.08995 * 109.47494 * 300.00190 * 6 5 3 26 26 H 1.08997 * 109.47189 * 60.00679 * 6 5 3 27 27 H 0.97002 * 119.99756 * 180.02562 * 10 9 7 28 28 H 1.09005 * 110.48345 * 23.00554 * 15 2 1 29 29 H 1.08998 * 110.48651 * 145.64509 * 15 2 1 30 30 H 1.09000 * 110.75719 * 80.37430 * 16 15 2 31 31 H 1.09000 * 110.75484 * 203.74013 * 16 15 2 32 32 H 1.09002 * 110.48884 * 279.26487 * 17 16 15 33 33 H 1.09007 * 110.48828 * 156.62335 * 17 16 15 34 34 H 1.00900 * 110.99342 * 172.92479 * 20 18 2 35 35 H 1.00899 * 110.99578 * 296.87549 * 20 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0459 1.4160 0.0000 4 8 2.8192 1.7796 -0.8606 5 7 1.6478 2.2782 0.9564 6 6 2.1497 3.6545 0.9566 7 6 1.5567 4.4052 2.1210 8 1 0.8745 3.9068 2.7938 9 6 1.8850 5.7283 2.3275 10 7 2.7162 6.3350 1.5085 11 14 1.1505 6.6586 3.7712 12 1 0.2525 5.7565 4.5361 13 1 2.2412 7.1393 4.6568 14 1 0.3733 7.8197 3.2681 15 6 2.0585 -0.7561 -1.2365 16 6 2.3280 -2.1905 -0.7181 17 6 2.8874 -1.9404 0.7044 18 6 2.0571 -0.7531 1.2341 19 1 1.2228 -1.1177 1.8334 20 7 2.9056 0.1344 2.0406 21 1 -0.3633 0.4921 0.9021 22 1 -0.3633 0.5353 -0.8773 23 1 -0.3634 -1.0273 -0.0249 24 1 1.0295 1.9873 1.6448 25 1 3.2360 3.6451 1.0462 26 1 1.8661 4.1449 0.0254 27 1 2.9475 7.2658 1.6540 28 1 1.3061 -0.7706 -2.0251 29 1 2.9811 -0.3009 -1.5965 30 1 1.4030 -2.7655 -0.6739 31 1 3.0675 -2.6938 -1.3410 32 1 3.9439 -1.6764 0.6579 33 1 2.7400 -2.8192 1.3323 34 1 3.1654 -0.3060 2.9104 35 1 3.7224 0.4223 1.5229 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134927872.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:01 Heat of formation + Delta-G solvation = -81.081937 kcal Electronic energy + Delta-G solvation = -16339.284602 eV Core-core repulsion = 13756.084986 eV Total energy + Delta-G solvation = -2583.199616 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.40504 -38.50950 -36.04631 -34.33066 -33.63953 -32.21839 -29.08081 -27.73253 -25.98800 -24.75738 -22.35573 -21.60216 -20.17918 -18.48151 -17.50575 -17.43019 -16.89539 -16.31346 -15.57638 -15.42958 -15.17632 -14.60584 -14.44447 -13.93439 -13.88184 -13.43410 -13.33523 -13.14456 -12.85304 -12.73600 -12.32018 -12.18554 -11.96688 -11.88751 -11.61303 -11.44858 -11.38778 -10.76768 -10.44168 -9.66087 -9.42114 -8.25555 -6.40785 1.43374 1.44851 1.58507 1.96969 2.36905 2.76310 3.09095 3.43669 3.60487 3.77304 4.02782 4.30573 4.32868 4.40477 4.46776 4.57383 4.73953 4.89974 4.98305 5.00492 5.11676 5.16452 5.20848 5.26309 5.32767 5.36455 5.48458 5.58665 5.84952 5.94388 6.20079 6.60318 6.71676 7.12725 7.28473 7.68950 8.87135 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.046277 B = 0.006568 C = 0.006375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.905343 B = 4262.038711 C = 4390.832869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.079 4.079 3 C 0.518 3.482 4 O -0.621 6.621 5 N -0.678 5.678 6 C 0.271 3.729 7 C -0.546 4.546 8 H 0.079 0.921 9 C 0.001 3.999 10 N -0.934 5.934 11 Si 0.985 3.015 12 H -0.254 1.254 13 H -0.279 1.279 14 H -0.279 1.279 15 C -0.113 4.113 16 C -0.110 4.110 17 C -0.152 4.152 18 C 0.102 3.898 19 H 0.113 0.887 20 N -0.851 5.851 21 H 0.064 0.936 22 H 0.048 0.952 23 H 0.098 0.902 24 H 0.404 0.596 25 H -0.017 1.017 26 H -0.022 1.022 27 H 0.267 0.733 28 H 0.074 0.926 29 H 0.049 0.951 30 H 0.093 0.907 31 H 0.073 0.927 32 H 0.052 0.948 33 H 0.093 0.907 34 H 0.353 0.647 35 H 0.331 0.669 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.848 -18.581 1.597 19.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.083 4.083 3 C 0.306 3.694 4 O -0.505 6.505 5 N -0.325 5.325 6 C 0.148 3.852 7 C -0.584 4.584 8 H 0.097 0.903 9 C -0.197 4.197 10 N -0.573 5.573 11 Si 0.808 3.192 12 H -0.177 1.177 13 H -0.205 1.205 14 H -0.205 1.205 15 C -0.151 4.151 16 C -0.147 4.147 17 C -0.192 4.192 18 C -0.010 4.010 19 H 0.131 0.869 20 N -0.381 5.381 21 H 0.083 0.917 22 H 0.067 0.933 23 H 0.117 0.883 24 H 0.240 0.760 25 H 0.000 1.000 26 H -0.004 1.004 27 H 0.076 0.924 28 H 0.093 0.907 29 H 0.068 0.932 30 H 0.111 0.889 31 H 0.091 0.909 32 H 0.071 0.929 33 H 0.111 0.889 34 H 0.167 0.833 35 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -4.871 -17.636 1.027 18.325 hybrid contribution 0.767 0.390 0.381 0.941 sum -4.103 -17.245 1.408 17.783 Atomic orbital electron populations 1.21873 0.90674 1.04183 1.02255 1.21611 0.98423 0.90097 0.98169 1.20969 0.80140 0.88285 0.80046 1.90585 1.39269 1.80057 1.40571 1.45899 1.46712 1.11168 1.28720 1.18420 0.92754 0.78831 0.95209 1.21619 1.28364 0.96689 1.11701 0.90254 1.26064 0.95235 0.98563 0.99886 1.70161 1.35455 1.12416 1.39289 0.85115 0.78161 0.78084 0.77859 1.17726 1.20458 1.20477 1.22391 1.01062 0.95891 0.95800 1.22411 1.02039 0.94830 0.95455 1.23202 0.98908 0.99242 0.97837 1.22235 0.96765 0.89857 0.92112 0.86877 1.58865 1.25178 1.44927 1.09085 0.91738 0.93311 0.88289 0.76044 0.99956 1.00388 0.92415 0.90714 0.93196 0.88885 0.90855 0.92936 0.88880 0.83254 0.85670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.06 7.98 71.98 0.57 -2.48 16 2 C -0.08 -2.27 0.79 -52.20 -0.04 -2.31 16 3 C 0.52 21.95 5.04 87.66 0.44 22.39 16 4 O -0.62 -32.50 15.39 -3.02 -0.05 -32.54 16 5 N -0.68 -30.49 4.57 -466.79 -2.13 -32.62 16 6 C 0.27 15.60 5.43 85.63 0.46 16.06 16 7 C -0.55 -30.88 9.28 25.60 0.24 -30.64 16 8 H 0.08 4.12 7.60 -2.91 -0.02 4.10 16 9 C 0.00 0.08 5.46 84.65 0.46 0.54 16 10 N -0.93 -58.01 13.29 21.45 0.28 -57.72 16 11 Si 0.98 43.61 29.54 68.60 2.03 45.64 16 12 H -0.25 -10.41 7.11 99.48 0.71 -9.70 16 13 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 14 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 15 C -0.11 -3.03 5.72 31.67 0.18 -2.85 16 16 C -0.11 -1.98 6.91 31.88 0.22 -1.76 16 17 C -0.15 -2.82 6.51 31.67 0.21 -2.62 16 18 C 0.10 2.32 3.68 45.64 0.17 2.49 16 19 H 0.11 2.04 7.67 -2.39 -0.02 2.02 16 20 N -0.85 -23.38 7.41 -165.67 -1.23 -24.61 16 21 H 0.06 1.48 7.39 -2.39 -0.02 1.46 16 22 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 23 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 24 H 0.40 16.01 7.44 -92.71 -0.69 15.32 16 25 H -0.02 -1.13 8.14 -2.39 -0.02 -1.15 16 26 H -0.02 -1.42 8.14 -2.39 -0.02 -1.43 16 27 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 28 H 0.07 1.83 7.84 -2.38 -0.02 1.82 16 29 H 0.05 1.70 6.83 -2.39 -0.02 1.69 16 30 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.05 1.12 7.88 -2.39 -0.02 1.11 16 33 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 34 H 0.35 7.69 9.08 -89.69 -0.81 6.87 16 35 H 0.33 10.83 8.04 -89.69 -0.72 10.11 16 Total: -1.00 -73.25 283.40 0.69 -72.55 By element: Atomic # 1 Polarization: 31.60 SS G_CDS: -1.12 Total: 30.48 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: 2.91 Total: -1.17 kcal Atomic # 7 Polarization: -111.87 SS G_CDS: -3.08 Total: -114.95 kcal Atomic # 8 Polarization: -32.50 SS G_CDS: -0.05 Total: -32.54 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -73.25 0.69 -72.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134927872.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.529 kcal (2) G-P(sol) polarization free energy of solvation -73.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds