Wall clock time and date at job start Mon Mar 30 2020 03:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50705 * 110.05682 * 2 1 4 4 O 1.21280 * 120.00168 * 239.96300 * 3 2 1 5 5 N 1.34779 * 119.99665 * 59.96140 * 3 2 1 6 6 C 1.46506 * 119.99886 * 180.02562 * 5 3 2 7 7 C 1.50696 * 109.46917 * 180.02562 * 6 5 3 8 8 H 1.08005 * 120.00157 * 0.02562 * 7 6 5 9 9 C 1.37877 * 119.99785 * 179.97438 * 7 6 5 10 10 N 1.31516 * 120.00079 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00091 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47173 * 89.99749 * 11 9 7 13 13 H 1.48500 * 109.47539 * 210.00146 * 11 9 7 14 14 H 1.48502 * 109.47023 * 330.00169 * 11 9 7 15 15 C 1.53869 * 110.03578 * 121.41685 * 2 1 3 16 16 C 1.54266 * 106.60031 * 119.28482 * 15 2 1 17 17 C 1.54894 * 104.31305 * 336.32486 * 16 15 2 18 18 C 1.54266 * 110.03387 * 238.58582 * 2 1 3 19 19 H 1.09006 * 110.48581 * 145.64719 * 18 2 1 20 20 N 1.46898 * 110.48595 * 23.13819 * 18 2 1 21 21 H 1.08999 * 109.47362 * 300.03910 * 1 2 3 22 22 H 1.08999 * 109.46910 * 60.03768 * 1 2 3 23 23 H 1.08999 * 109.47064 * 180.02562 * 1 2 3 24 24 H 0.97003 * 120.00304 * 0.02562 * 5 3 2 25 25 H 1.08994 * 109.47054 * 300.00082 * 6 5 3 26 26 H 1.09002 * 109.46813 * 60.00499 * 6 5 3 27 27 H 0.96997 * 119.99594 * 179.97438 * 10 9 7 28 28 H 1.09001 * 110.02983 * 0.02562 * 15 2 1 29 29 H 1.08996 * 110.07773 * 238.59377 * 15 2 1 30 30 H 1.09002 * 110.48629 * 95.07240 * 16 15 2 31 31 H 1.08998 * 110.48744 * 217.58143 * 16 15 2 32 32 H 1.08996 * 110.75388 * 156.31523 * 17 16 15 33 33 H 1.08993 * 110.76071 * 279.69749 * 17 16 15 34 34 H 1.00900 * 111.00299 * 180.02562 * 20 18 2 35 35 H 1.00900 * 111.00000 * 303.95229 * 20 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0468 1.4156 0.0000 4 8 2.7487 1.8050 -0.9092 5 7 1.7290 2.2490 1.0105 6 6 2.2310 3.6254 1.0102 7 6 1.7357 4.3408 2.2406 8 1 1.1100 3.8221 2.9519 9 6 2.0823 5.6574 2.4588 10 7 2.8446 6.2889 1.5930 11 14 1.4690 6.5441 3.9843 12 1 2.4456 6.3632 5.0882 13 1 1.3186 7.9916 3.6887 14 1 0.1552 5.9824 4.3888 15 6 2.0571 -0.7535 1.2336 16 6 2.8875 -1.9406 0.7034 17 6 2.3290 -2.1936 -0.7190 18 6 2.0585 -0.7554 -1.2369 19 1 2.9812 -0.2999 -1.5966 20 7 1.0458 -0.7716 -2.3009 21 1 -0.3634 0.5144 0.8896 22 1 -0.3633 0.5132 -0.8903 23 1 -0.3633 -1.0277 0.0005 24 1 1.1680 1.9375 1.7379 25 1 3.3209 3.6146 1.0106 26 1 1.8730 4.1425 0.1200 27 1 3.0881 7.2152 1.7464 28 1 1.2230 -1.1196 1.8321 29 1 2.6865 -0.0958 1.8331 30 1 3.9441 -1.6766 0.6571 31 1 2.7420 -2.8190 1.3322 32 1 3.0689 -2.6978 -1.3404 33 1 1.4041 -2.7685 -0.6742 34 1 1.3834 -1.2645 -3.1140 35 1 0.1801 -1.1708 -1.9701 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134927889.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:04 Heat of formation + Delta-G solvation = -57.842151 kcal Electronic energy + Delta-G solvation = -16148.756116 eV Core-core repulsion = 13566.564253 eV Total energy + Delta-G solvation = -2582.191863 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.05028 -37.22768 -34.14004 -32.74867 -32.27056 -31.07010 -27.12481 -26.49830 -25.34177 -22.84403 -21.03607 -20.29743 -18.52019 -17.33022 -16.14687 -15.51872 -15.33028 -15.00405 -14.51612 -13.98194 -13.71704 -13.17322 -13.08335 -12.46514 -12.34211 -12.28412 -11.92878 -11.61137 -11.41746 -11.14152 -10.95641 -10.89746 -10.77372 -10.50069 -10.43861 -10.26509 -9.35073 -8.79302 -8.68841 -8.50169 -7.78268 -6.12995 -4.19649 3.26102 3.32113 3.34693 3.50199 4.11591 4.39129 4.49785 4.52306 4.88245 5.04114 5.22903 5.27529 5.35300 5.47579 5.53974 5.57473 5.60028 5.78340 5.87637 5.96945 6.04977 6.19434 6.28149 6.32281 6.49068 7.26565 7.37733 7.53118 7.55338 7.58349 7.72551 8.02154 8.72135 8.84402 9.21485 9.47400 10.97290 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.046510 B = 0.006103 C = 0.005909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.877754 B = 4586.798688 C = 4737.642951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.080 4.080 3 C 0.513 3.487 4 O -0.550 6.550 5 N -0.712 5.712 6 C 0.250 3.750 7 C -0.542 4.542 8 H 0.062 0.938 9 C 0.063 3.937 10 N -0.886 5.886 11 Si 0.903 3.097 12 H -0.279 1.279 13 H -0.284 1.284 14 H -0.273 1.273 15 C -0.117 4.117 16 C -0.119 4.119 17 C -0.160 4.160 18 C 0.106 3.894 19 H 0.104 0.896 20 N -0.836 5.836 21 H 0.059 0.941 22 H 0.074 0.926 23 H 0.055 0.945 24 H 0.388 0.612 25 H 0.025 0.975 26 H 0.026 0.974 27 H 0.265 0.735 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.337 0.663 35 H 0.336 0.664 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.031 -16.798 -1.324 17.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.084 4.084 3 C 0.297 3.703 4 O -0.429 6.429 5 N -0.360 5.360 6 C 0.129 3.871 7 C -0.580 4.580 8 H 0.080 0.920 9 C -0.140 4.140 10 N -0.523 5.523 11 Si 0.730 3.270 12 H -0.205 1.205 13 H -0.210 1.210 14 H -0.198 1.198 15 C -0.155 4.155 16 C -0.158 4.158 17 C -0.200 4.200 18 C -0.006 4.006 19 H 0.122 0.878 20 N -0.365 5.365 21 H 0.078 0.922 22 H 0.093 0.907 23 H 0.074 0.926 24 H 0.221 0.779 25 H 0.043 0.957 26 H 0.044 0.956 27 H 0.075 0.925 28 H 0.090 0.910 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.150 0.850 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -3.374 -15.472 -2.016 15.964 hybrid contribution -0.509 -0.587 1.341 1.550 sum -3.884 -16.059 -0.674 16.536 Atomic orbital electron populations 1.21765 0.92711 1.01538 1.03155 1.21384 0.97190 0.93817 0.95965 1.20170 0.80937 0.86672 0.82501 1.90628 1.38853 1.77221 1.36192 1.46415 1.51619 1.14642 1.23361 1.19075 0.95025 0.75624 0.97354 1.21235 1.32791 0.97057 1.06916 0.91986 1.24954 0.94886 0.97235 0.96964 1.69981 1.35434 1.11567 1.35352 0.86427 0.79135 0.78851 0.82560 1.20496 1.21014 1.19767 1.22282 1.00000 0.96908 0.96355 1.22237 0.99882 0.97762 0.95877 1.23406 1.00739 0.98498 0.97337 1.22293 0.96029 0.92230 0.90039 0.87804 1.58805 1.06407 1.62920 1.08320 0.92175 0.90749 0.92569 0.77911 0.95706 0.95620 0.92493 0.90959 0.90813 0.91370 0.91703 0.91598 0.91799 0.84984 0.85003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.73 6.91 37.16 0.26 -1.47 16 2 C -0.08 -1.19 0.75 -154.54 -0.12 -1.31 16 3 C 0.51 10.69 6.29 -10.98 -0.07 10.62 16 4 O -0.55 -13.83 15.42 5.56 0.09 -13.74 16 5 N -0.71 -15.53 5.30 -61.47 -0.33 -15.85 16 6 C 0.25 6.81 5.43 -5.19 -0.03 6.78 16 7 C -0.54 -14.96 9.28 -34.44 -0.32 -15.28 16 8 H 0.06 1.60 7.60 -52.48 -0.40 1.20 16 9 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 10 N -0.89 -26.52 13.29 55.43 0.74 -25.78 16 11 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 12 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 13 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 14 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 15 C -0.12 -1.49 6.02 -25.62 -0.15 -1.65 16 16 C -0.12 -1.32 6.82 -25.07 -0.17 -1.49 16 17 C -0.16 -1.69 6.59 -24.55 -0.16 -1.85 16 18 C 0.11 1.48 3.23 -65.87 -0.21 1.26 16 19 H 0.10 1.78 6.90 -51.93 -0.36 1.42 16 20 N -0.84 -10.36 8.52 -3.10 -0.03 -10.39 16 21 H 0.06 0.76 7.62 -51.93 -0.40 0.36 16 22 H 0.07 1.06 7.31 -51.93 -0.38 0.68 16 23 H 0.06 0.57 7.67 -51.93 -0.40 0.17 16 24 H 0.39 7.38 7.75 -40.82 -0.32 7.06 16 25 H 0.02 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 28 H 0.07 0.78 7.67 -51.93 -0.40 0.38 16 29 H 0.07 1.06 7.59 -51.93 -0.39 0.66 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.34 3.51 9.08 -39.29 -0.36 3.15 16 35 H 0.34 3.50 6.99 -39.29 -0.27 3.22 16 LS Contribution 283.46 15.07 4.27 4.27 Total: -1.00 -32.43 283.46 -6.69 -39.12 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -5.34 Total: 9.01 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: -1.07 Total: -2.71 kcal Atomic # 7 Polarization: -52.41 SS G_CDS: 0.38 Total: -52.02 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: 0.09 Total: -13.74 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -32.43 -6.69 -39.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134927889.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.722 kcal (2) G-P(sol) polarization free energy of solvation -32.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds