Wall clock time and date at job start Mon Mar 30 2020 03:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50705 * 110.05682 * 2 1 4 4 O 1.21280 * 120.00168 * 239.96300 * 3 2 1 5 5 N 1.34779 * 119.99665 * 59.96140 * 3 2 1 6 6 C 1.46506 * 119.99886 * 180.02562 * 5 3 2 7 7 C 1.50696 * 109.46917 * 180.02562 * 6 5 3 8 8 H 1.08005 * 120.00157 * 0.02562 * 7 6 5 9 9 C 1.37877 * 119.99785 * 179.97438 * 7 6 5 10 10 N 1.31516 * 120.00079 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00091 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47173 * 89.99749 * 11 9 7 13 13 H 1.48500 * 109.47539 * 210.00146 * 11 9 7 14 14 H 1.48502 * 109.47023 * 330.00169 * 11 9 7 15 15 C 1.53869 * 110.03578 * 121.41685 * 2 1 3 16 16 C 1.54266 * 106.60031 * 119.28482 * 15 2 1 17 17 C 1.54894 * 104.31305 * 336.32486 * 16 15 2 18 18 C 1.54266 * 110.03387 * 238.58582 * 2 1 3 19 19 H 1.09006 * 110.48581 * 145.64719 * 18 2 1 20 20 N 1.46898 * 110.48595 * 23.13819 * 18 2 1 21 21 H 1.08999 * 109.47362 * 300.03910 * 1 2 3 22 22 H 1.08999 * 109.46910 * 60.03768 * 1 2 3 23 23 H 1.08999 * 109.47064 * 180.02562 * 1 2 3 24 24 H 0.97003 * 120.00304 * 0.02562 * 5 3 2 25 25 H 1.08994 * 109.47054 * 300.00082 * 6 5 3 26 26 H 1.09002 * 109.46813 * 60.00499 * 6 5 3 27 27 H 0.96997 * 119.99594 * 179.97438 * 10 9 7 28 28 H 1.09001 * 110.02983 * 0.02562 * 15 2 1 29 29 H 1.08996 * 110.07773 * 238.59377 * 15 2 1 30 30 H 1.09002 * 110.48629 * 95.07240 * 16 15 2 31 31 H 1.08998 * 110.48744 * 217.58143 * 16 15 2 32 32 H 1.08996 * 110.75388 * 156.31523 * 17 16 15 33 33 H 1.08993 * 110.76071 * 279.69749 * 17 16 15 34 34 H 1.00900 * 111.00299 * 180.02562 * 20 18 2 35 35 H 1.00900 * 111.00000 * 303.95229 * 20 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0468 1.4156 0.0000 4 8 2.7487 1.8050 -0.9092 5 7 1.7290 2.2490 1.0105 6 6 2.2310 3.6254 1.0102 7 6 1.7357 4.3408 2.2406 8 1 1.1100 3.8221 2.9519 9 6 2.0823 5.6574 2.4588 10 7 2.8446 6.2889 1.5930 11 14 1.4690 6.5441 3.9843 12 1 2.4456 6.3632 5.0882 13 1 1.3186 7.9916 3.6887 14 1 0.1552 5.9824 4.3888 15 6 2.0571 -0.7535 1.2336 16 6 2.8875 -1.9406 0.7034 17 6 2.3290 -2.1936 -0.7190 18 6 2.0585 -0.7554 -1.2369 19 1 2.9812 -0.2999 -1.5966 20 7 1.0458 -0.7716 -2.3009 21 1 -0.3634 0.5144 0.8896 22 1 -0.3633 0.5132 -0.8903 23 1 -0.3633 -1.0277 0.0005 24 1 1.1680 1.9375 1.7379 25 1 3.3209 3.6146 1.0106 26 1 1.8730 4.1425 0.1200 27 1 3.0881 7.2152 1.7464 28 1 1.2230 -1.1196 1.8321 29 1 2.6865 -0.0958 1.8331 30 1 3.9441 -1.6766 0.6571 31 1 2.7420 -2.8190 1.3322 32 1 3.0689 -2.6978 -1.3404 33 1 1.4041 -2.7685 -0.6742 34 1 1.3834 -1.2645 -3.1140 35 1 0.1801 -1.1708 -1.9701 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134927889.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:04 Heat of formation + Delta-G solvation = -83.317025 kcal Electronic energy + Delta-G solvation = -16149.860789 eV Core-core repulsion = 13566.564253 eV Total energy + Delta-G solvation = -2583.296536 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.44728 -38.70785 -36.15504 -34.48031 -33.55486 -32.29863 -29.17221 -27.46861 -26.51810 -24.83931 -22.42895 -21.52411 -20.11795 -18.72455 -17.94045 -17.00982 -16.79186 -16.53856 -16.03126 -15.64260 -15.17460 -14.57405 -14.09245 -14.06274 -14.00265 -13.55397 -13.26154 -13.13222 -12.91053 -12.72211 -12.61993 -12.23108 -12.04784 -11.83991 -11.56680 -11.48343 -11.47134 -10.81046 -10.51176 -9.81116 -9.44543 -8.30024 -6.47353 1.42043 1.45093 1.56412 1.82565 2.31991 2.59403 3.04508 3.45869 3.50917 3.77364 4.02713 4.23309 4.32174 4.38074 4.45785 4.55173 4.69509 4.89373 4.90437 5.00591 5.09624 5.13901 5.16956 5.21798 5.26162 5.39711 5.43713 5.49302 5.70665 5.84267 6.34308 6.63853 6.73058 6.93906 7.22379 7.52315 8.82474 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.046510 B = 0.006103 C = 0.005909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.877754 B = 4586.798688 C = 4737.642951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.073 4.073 3 C 0.504 3.496 4 O -0.602 6.602 5 N -0.706 5.706 6 C 0.267 3.733 7 C -0.556 4.556 8 H 0.084 0.916 9 C 0.002 3.998 10 N -0.932 5.932 11 Si 0.987 3.013 12 H -0.269 1.269 13 H -0.283 1.283 14 H -0.254 1.254 15 C -0.116 4.116 16 C -0.118 4.118 17 C -0.144 4.144 18 C 0.103 3.897 19 H 0.061 0.939 20 N -0.848 5.848 21 H 0.063 0.937 22 H 0.056 0.944 23 H 0.097 0.903 24 H 0.405 0.595 25 H -0.016 1.016 26 H -0.017 1.017 27 H 0.269 0.731 28 H 0.104 0.896 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.095 0.905 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.348 0.652 35 H 0.351 0.649 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.047 -19.078 0.610 20.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.076 4.076 3 C 0.292 3.708 4 O -0.484 6.484 5 N -0.355 5.355 6 C 0.144 3.856 7 C -0.593 4.593 8 H 0.102 0.898 9 C -0.197 4.197 10 N -0.571 5.571 11 Si 0.810 3.190 12 H -0.195 1.195 13 H -0.209 1.209 14 H -0.178 1.178 15 C -0.154 4.154 16 C -0.157 4.157 17 C -0.183 4.183 18 C -0.009 4.009 19 H 0.079 0.921 20 N -0.380 5.380 21 H 0.082 0.918 22 H 0.075 0.925 23 H 0.116 0.884 24 H 0.241 0.759 25 H 0.002 0.998 26 H 0.001 0.999 27 H 0.078 0.922 28 H 0.123 0.877 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.113 0.887 32 H 0.094 0.906 33 H 0.110 0.890 34 H 0.163 0.837 35 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -5.421 -17.809 -0.070 18.616 hybrid contribution 0.166 0.125 0.642 0.675 sum -5.255 -17.684 0.572 18.457 Atomic orbital electron populations 1.21789 0.90450 1.04035 1.02525 1.21454 0.98783 0.89314 0.98075 1.21428 0.79566 0.88928 0.80882 1.90599 1.41005 1.78767 1.37994 1.46166 1.51931 1.12830 1.24589 1.18507 0.92539 0.78439 0.96070 1.21608 1.33084 0.97633 1.07022 0.89825 1.26114 0.94672 0.98203 1.00710 1.70152 1.36878 1.12134 1.37934 0.85123 0.79260 0.77025 0.77597 1.19474 1.20899 1.17801 1.22327 1.01017 0.96888 0.95144 1.22268 0.98717 0.98005 0.96660 1.23307 1.02289 0.96047 0.96698 1.22143 0.94626 0.94195 0.89939 0.92098 1.58694 1.06816 1.63969 1.08533 0.91798 0.92505 0.88416 0.75933 0.99840 0.99947 0.92231 0.87710 0.93084 0.92896 0.88676 0.90625 0.89031 0.83750 0.83365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.01 6.91 71.98 0.50 -2.51 16 2 C -0.07 -2.10 0.75 -52.20 -0.04 -2.14 16 3 C 0.50 21.85 6.29 87.66 0.55 22.40 16 4 O -0.60 -32.35 15.42 -3.03 -0.05 -32.40 16 5 N -0.71 -31.79 5.30 -466.78 -2.47 -34.27 16 6 C 0.27 15.41 5.43 85.63 0.46 15.88 16 7 C -0.56 -31.16 9.28 25.60 0.24 -30.92 16 8 H 0.08 4.22 7.60 -2.91 -0.02 4.20 16 9 C 0.00 0.14 5.46 84.65 0.46 0.60 16 10 N -0.93 -57.67 13.29 21.45 0.28 -57.39 16 11 Si 0.99 42.99 29.54 68.60 2.03 45.01 16 12 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 13 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 14 H -0.25 -10.26 7.11 99.48 0.71 -9.55 16 15 C -0.12 -2.67 6.02 31.32 0.19 -2.49 16 16 C -0.12 -2.27 6.82 31.67 0.22 -2.05 16 17 C -0.14 -2.58 6.59 32.01 0.21 -2.37 16 18 C 0.10 2.79 3.23 46.11 0.15 2.94 16 19 H 0.06 2.18 6.90 -2.38 -0.02 2.17 16 20 N -0.85 -19.91 8.52 -163.73 -1.39 -21.30 16 21 H 0.06 1.43 7.62 -2.39 -0.02 1.41 16 22 H 0.06 1.53 7.31 -2.39 -0.02 1.51 16 23 H 0.10 1.48 7.67 -2.39 -0.02 1.46 16 24 H 0.41 15.29 7.75 -92.71 -0.72 14.58 16 25 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 26 H -0.02 -1.14 8.14 -2.39 -0.02 -1.15 16 27 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 28 H 0.10 1.78 7.67 -2.39 -0.02 1.76 16 29 H 0.05 1.42 7.59 -2.39 -0.02 1.40 16 30 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.35 6.79 9.08 -89.69 -0.81 5.97 16 35 H 0.35 6.29 6.99 -89.69 -0.63 5.67 16 Total: -1.00 -75.48 283.46 0.28 -75.20 By element: Atomic # 1 Polarization: 26.86 SS G_CDS: -1.05 Total: 25.81 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: 2.94 Total: -0.67 kcal Atomic # 7 Polarization: -109.37 SS G_CDS: -3.58 Total: -112.96 kcal Atomic # 8 Polarization: -32.35 SS G_CDS: -0.05 Total: -32.40 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.01 kcal Total: -75.48 0.28 -75.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134927889.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.114 kcal (2) G-P(sol) polarization free energy of solvation -75.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds