Wall clock time and date at job start Mon Mar 30 2020 02:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99821 * 2 1 4 4 H 1.48495 * 109.46955 * 239.99885 * 3 2 1 5 5 H 1.48502 * 109.46902 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47280 * 119.99749 * 3 2 1 7 7 C 1.37872 * 120.00263 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00392 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00174 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47618 * 180.02562 * 9 7 2 11 11 N 1.46895 * 109.47301 * 179.97438 * 10 9 7 12 12 C 1.46904 * 111.00011 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.47192 * 180.02562 * 12 11 10 14 14 O 1.21283 * 119.99803 * 0.02562 * 13 12 11 15 15 N 1.34777 * 119.99675 * 180.28082 * 13 12 11 16 16 C 1.47021 * 125.65024 * 359.41182 * 15 13 12 17 17 C 1.54315 * 107.27409 * 180.97007 * 16 15 13 18 18 C 1.55154 * 102.86480 * 22.53033 * 17 16 15 19 19 C 1.47426 * 125.64505 * 179.72939 * 15 13 12 20 20 H 0.96993 * 120.00298 * 359.97438 * 1 2 3 21 21 H 1.09005 * 109.47354 * 59.99717 * 9 7 2 22 22 H 1.09006 * 109.47251 * 300.00007 * 9 7 2 23 23 H 1.08999 * 109.46732 * 59.99853 * 10 9 7 24 24 H 1.08998 * 109.46958 * 300.00552 * 10 9 7 25 25 H 1.00893 * 111.00470 * 303.95683 * 11 10 9 26 26 H 1.09009 * 109.46542 * 60.00300 * 12 11 10 27 27 H 1.08998 * 109.47050 * 300.00834 * 12 11 10 28 28 H 1.08996 * 109.88207 * 300.52041 * 16 15 13 29 29 H 1.09003 * 109.87977 * 61.68746 * 16 15 13 30 30 H 1.08996 * 110.92423 * 264.11532 * 17 16 15 31 31 H 1.09001 * 110.58635 * 140.78603 * 17 16 15 32 32 H 1.08997 * 111.00532 * 206.22526 * 18 17 16 33 33 H 1.09003 * 111.00563 * 82.37309 * 18 17 16 34 34 H 1.09005 * 110.36361 * 274.67139 * 19 15 13 35 35 H 1.09001 * 110.37156 * 36.87958 * 19 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 7 1.5110 -4.9342 0.0024 12 6 2.4355 -6.0758 0.0031 13 6 1.6475 -7.3604 0.0031 14 8 0.4351 -7.3280 0.0021 15 7 2.2901 -8.5451 0.0093 16 6 3.7488 -8.7288 0.0042 17 6 4.0193 -10.2480 -0.0102 18 6 2.7030 -10.8277 -0.5921 19 6 1.6466 -9.8715 0.0157 20 1 -0.4850 0.8400 0.0004 21 1 0.6248 -2.5571 -0.8897 22 1 0.6241 -2.5567 0.8903 23 1 2.8714 -3.6038 0.8923 24 1 2.8728 -3.6046 -0.8876 25 1 0.8742 -4.9838 0.7835 26 1 3.0634 -6.0343 0.8932 27 1 3.0636 -6.0352 -0.8868 28 1 4.1776 -8.2654 -0.8843 29 1 4.1812 -8.2858 0.9014 30 1 4.1926 -10.6221 0.9987 31 1 4.8633 -10.4808 -0.6595 32 1 2.5439 -11.8516 -0.2537 33 1 2.6993 -10.7726 -1.6807 34 1 1.4057 -10.1713 1.0357 35 1 0.7458 -9.8592 -0.5980 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161596065.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:38 Heat of formation + Delta-G solvation = -41.993265 kcal Electronic energy + Delta-G solvation = -15181.372077 eV Core-core repulsion = 12599.867473 eV Total energy + Delta-G solvation = -2581.504604 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.99776 -37.51673 -35.50056 -32.89843 -31.89313 -29.94287 -29.16169 -26.34022 -23.93807 -22.79634 -21.40233 -20.60388 -19.23876 -17.04641 -16.82120 -16.26608 -15.50430 -15.34761 -14.41462 -14.07479 -13.85514 -13.68463 -13.35724 -13.06544 -12.70208 -12.24124 -12.06065 -11.96623 -11.66391 -11.51035 -11.09824 -11.03197 -10.89944 -10.56709 -10.00852 -9.76892 -9.32234 -9.13752 -8.73455 -8.32074 -7.82757 -5.95987 -3.99290 2.74750 2.87962 3.35492 3.39877 3.41957 4.18014 4.27552 4.46396 4.56802 4.78272 4.91968 4.97411 5.07450 5.32336 5.39207 5.39434 5.44552 5.50683 5.54589 5.59760 5.69571 5.82547 6.18050 6.30407 6.35952 6.97224 7.33550 7.51579 7.75469 7.83745 7.96347 8.12123 8.28250 8.45767 9.07878 9.64132 11.15425 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.071277 B = 0.004049 C = 0.003865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 392.741729 B = 6913.925420 C = 7243.031980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.054 0.946 9 C 0.025 3.975 10 C 0.067 3.933 11 N -0.677 5.677 12 C 0.047 3.953 13 C 0.528 3.472 14 O -0.521 6.521 15 N -0.628 5.628 16 C 0.099 3.901 17 C -0.132 4.132 18 C -0.134 4.134 19 C 0.105 3.895 20 H 0.261 0.739 21 H 0.027 0.973 22 H 0.015 0.985 23 H 0.017 0.983 24 H 0.060 0.940 25 H 0.346 0.654 26 H 0.052 0.948 27 H 0.096 0.904 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.439 -21.210 0.585 23.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.562 4.562 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.061 4.061 11 N -0.310 5.310 12 C -0.085 4.085 13 C 0.316 3.684 14 O -0.395 6.395 15 N -0.366 5.366 16 C -0.025 4.025 17 C -0.170 4.170 18 C -0.172 4.172 19 C -0.018 4.018 20 H 0.071 0.929 21 H 0.046 0.954 22 H 0.034 0.966 23 H 0.035 0.965 24 H 0.078 0.922 25 H 0.165 0.835 26 H 0.070 0.930 27 H 0.114 0.886 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.095 0.905 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.095 0.905 34 H 0.083 0.917 35 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 8.481 -20.966 -0.093 22.617 hybrid contribution 0.922 0.926 0.916 1.596 sum 9.403 -20.040 0.823 22.152 Atomic orbital electron populations 1.69968 1.06041 1.26723 1.50375 1.25011 0.94844 0.99217 0.95308 0.86634 0.79535 0.83113 0.78543 1.20228 1.21273 1.20305 1.21122 0.92912 0.90977 1.51203 0.92772 1.19069 0.94014 0.90172 0.98015 1.22212 0.97080 0.88072 0.98688 1.60317 1.18664 1.00864 1.51123 1.21773 0.95170 0.89400 1.02201 1.20595 0.88262 0.83900 0.75594 1.90717 1.13887 1.86548 1.48330 1.48593 1.07152 1.05673 1.75180 1.22041 0.81286 0.97108 1.02037 1.22634 0.98256 0.93968 1.02110 1.22794 0.94425 0.98927 1.01082 1.22180 0.96776 0.81917 1.00916 0.92897 0.95448 0.96646 0.96506 0.92178 0.83472 0.93047 0.88575 0.91168 0.91316 0.90498 0.89950 0.89870 0.90527 0.91690 0.90385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.52 13.29 55.43 0.74 -26.79 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.52 -15.12 9.11 -34.44 -0.31 -15.44 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.67 5.23 -27.88 -0.15 0.52 16 10 C 0.07 1.46 5.62 -3.83 -0.02 1.43 16 11 N -0.68 -13.37 6.12 -115.05 -0.70 -14.07 16 12 C 0.05 0.72 5.36 -4.97 -0.03 0.70 16 13 C 0.53 8.35 7.89 -10.98 -0.09 8.26 16 14 O -0.52 -10.43 16.46 5.55 0.09 -10.33 16 15 N -0.63 -7.47 3.33 -170.52 -0.57 -8.04 16 16 C 0.10 0.80 6.48 -3.07 -0.02 0.78 16 17 C -0.13 -0.76 6.95 -24.90 -0.17 -0.94 16 18 C -0.13 -0.87 7.08 -24.58 -0.17 -1.05 16 19 C 0.10 1.04 6.91 -2.53 -0.02 1.02 16 20 H 0.26 7.59 8.31 -40.82 -0.34 7.26 16 21 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 22 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 23 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 24 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 25 H 0.35 7.01 8.43 -39.30 -0.33 6.68 16 26 H 0.05 0.69 8.14 -51.92 -0.42 0.27 16 27 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.08 0.88 8.03 -51.93 -0.42 0.46 16 LS Contribution 294.51 15.07 4.44 4.44 Total: -1.00 -33.97 294.51 -7.89 -41.86 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: -5.79 Total: -0.85 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: -1.08 Total: -3.10 kcal Atomic # 7 Polarization: -48.36 SS G_CDS: -0.54 Total: -48.90 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: 0.09 Total: -10.33 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -33.97 -7.89 -41.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161596065.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.133 kcal (2) G-P(sol) polarization free energy of solvation -33.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds