Wall clock time and date at job start Mon Mar 30 2020 02:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99821 * 2 1 4 4 H 1.48495 * 109.46955 * 239.99885 * 3 2 1 5 5 H 1.48502 * 109.46902 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47280 * 119.99749 * 3 2 1 7 7 C 1.37872 * 120.00263 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00392 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00174 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47618 * 180.02562 * 9 7 2 11 11 N 1.46895 * 109.47301 * 179.97438 * 10 9 7 12 12 C 1.46904 * 111.00011 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.47192 * 180.02562 * 12 11 10 14 14 O 1.21283 * 119.99803 * 0.02562 * 13 12 11 15 15 N 1.34777 * 119.99675 * 180.28082 * 13 12 11 16 16 C 1.47021 * 125.65024 * 359.41182 * 15 13 12 17 17 C 1.54315 * 107.27409 * 180.97007 * 16 15 13 18 18 C 1.55154 * 102.86480 * 22.53033 * 17 16 15 19 19 C 1.47426 * 125.64505 * 179.72939 * 15 13 12 20 20 H 0.96993 * 120.00298 * 359.97438 * 1 2 3 21 21 H 1.09005 * 109.47354 * 59.99717 * 9 7 2 22 22 H 1.09006 * 109.47251 * 300.00007 * 9 7 2 23 23 H 1.08999 * 109.46732 * 59.99853 * 10 9 7 24 24 H 1.08998 * 109.46958 * 300.00552 * 10 9 7 25 25 H 1.00893 * 111.00470 * 303.95683 * 11 10 9 26 26 H 1.09009 * 109.46542 * 60.00300 * 12 11 10 27 27 H 1.08998 * 109.47050 * 300.00834 * 12 11 10 28 28 H 1.08996 * 109.88207 * 300.52041 * 16 15 13 29 29 H 1.09003 * 109.87977 * 61.68746 * 16 15 13 30 30 H 1.08996 * 110.92423 * 264.11532 * 17 16 15 31 31 H 1.09001 * 110.58635 * 140.78603 * 17 16 15 32 32 H 1.08997 * 111.00532 * 206.22526 * 18 17 16 33 33 H 1.09003 * 111.00563 * 82.37309 * 18 17 16 34 34 H 1.09005 * 110.36361 * 274.67139 * 19 15 13 35 35 H 1.09001 * 110.37156 * 36.87958 * 19 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 7 1.5110 -4.9342 0.0024 12 6 2.4355 -6.0758 0.0031 13 6 1.6475 -7.3604 0.0031 14 8 0.4351 -7.3280 0.0021 15 7 2.2901 -8.5451 0.0093 16 6 3.7488 -8.7288 0.0042 17 6 4.0193 -10.2480 -0.0102 18 6 2.7030 -10.8277 -0.5921 19 6 1.6466 -9.8715 0.0157 20 1 -0.4850 0.8400 0.0004 21 1 0.6248 -2.5571 -0.8897 22 1 0.6241 -2.5567 0.8903 23 1 2.8714 -3.6038 0.8923 24 1 2.8728 -3.6046 -0.8876 25 1 0.8742 -4.9838 0.7835 26 1 3.0634 -6.0343 0.8932 27 1 3.0636 -6.0352 -0.8868 28 1 4.1776 -8.2654 -0.8843 29 1 4.1812 -8.2858 0.9014 30 1 4.1926 -10.6221 0.9987 31 1 4.8633 -10.4808 -0.6595 32 1 2.5439 -11.8516 -0.2537 33 1 2.6993 -10.7726 -1.6807 34 1 1.4057 -10.1713 1.0357 35 1 0.7458 -9.8592 -0.5980 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161596065.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:38 Heat of formation + Delta-G solvation = -66.790969 kcal Electronic energy + Delta-G solvation = -15182.447386 eV Core-core repulsion = 12599.867473 eV Total energy + Delta-G solvation = -2582.579913 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.04423 -38.51488 -37.14120 -34.97513 -32.87246 -31.61828 -30.00372 -27.90050 -25.58808 -23.91984 -22.50749 -22.00345 -20.26035 -18.51531 -18.15486 -17.72928 -16.78457 -16.57384 -16.32749 -15.31227 -15.24015 -14.53944 -14.32396 -14.27284 -14.02154 -13.95625 -13.44573 -13.20838 -12.91080 -12.80061 -12.46612 -12.18477 -12.12767 -11.97782 -11.58037 -11.51277 -11.33760 -10.88737 -10.56130 -9.69600 -9.35372 -8.19288 -6.32183 1.41423 1.45739 1.53589 1.55253 1.89894 2.41881 3.13958 3.30138 3.50594 3.69773 3.90991 4.06259 4.27267 4.29911 4.34353 4.49453 4.54641 4.59601 4.68414 4.86856 4.95330 5.00727 5.04431 5.13153 5.28015 5.39105 5.44380 5.63824 5.75931 6.05980 6.17589 6.35779 6.48443 6.85437 7.12702 7.37512 8.93213 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.071277 B = 0.004049 C = 0.003865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 392.741729 B = 6913.925420 C = 7243.031980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.973 3.027 4 H -0.264 1.264 5 H -0.285 1.285 6 H -0.264 1.264 7 C -0.544 4.544 8 H 0.068 0.932 9 C 0.028 3.972 10 C 0.087 3.913 11 N -0.696 5.696 12 C 0.051 3.949 13 C 0.522 3.478 14 O -0.578 6.578 15 N -0.624 5.624 16 C 0.086 3.914 17 C -0.123 4.123 18 C -0.124 4.124 19 C 0.094 3.906 20 H 0.264 0.736 21 H -0.010 1.010 22 H -0.013 1.013 23 H 0.031 0.969 24 H 0.069 0.931 25 H 0.339 0.661 26 H 0.079 0.921 27 H 0.115 0.885 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.104 0.896 32 H 0.105 0.895 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.505 -22.031 0.689 25.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.797 3.203 4 H -0.189 1.189 5 H -0.211 1.211 6 H -0.188 1.188 7 C -0.583 4.583 8 H 0.086 0.914 9 C -0.009 4.009 10 C -0.041 4.041 11 N -0.328 5.328 12 C -0.081 4.081 13 C 0.311 3.689 14 O -0.457 6.457 15 N -0.359 5.359 16 C -0.035 4.035 17 C -0.160 4.160 18 C -0.162 4.162 19 C -0.029 4.029 20 H 0.072 0.928 21 H 0.008 0.992 22 H 0.006 0.994 23 H 0.049 0.951 24 H 0.087 0.913 25 H 0.157 0.843 26 H 0.097 0.903 27 H 0.133 0.867 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.107 0.893 31 H 0.122 0.878 32 H 0.124 0.876 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 11.615 -21.846 0.008 24.741 hybrid contribution -0.039 1.070 0.887 1.391 sum 11.576 -20.775 0.895 23.800 Atomic orbital electron populations 1.70131 1.08104 1.27937 1.51362 1.26076 0.95770 1.03739 0.94562 0.85390 0.78114 0.77487 0.79356 1.18898 1.21063 1.18840 1.21587 0.93757 0.91876 1.51043 0.91409 1.18945 0.94447 0.92671 0.94867 1.21835 0.95500 0.87097 0.99684 1.60184 1.19774 1.01598 1.51228 1.21828 0.94489 0.87492 1.04243 1.20673 0.87611 0.85191 0.75401 1.90691 1.16123 1.87464 1.51443 1.48666 1.09166 1.05185 1.72868 1.22407 0.78650 0.99393 1.03097 1.22663 0.98290 0.91748 1.03318 1.22781 0.93432 0.99083 1.00914 1.22402 0.97314 0.81935 1.01206 0.92758 0.99162 0.99430 0.95115 0.91259 0.84268 0.90348 0.86696 0.90189 0.90161 0.89320 0.87756 0.87640 0.90565 0.91235 0.92599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.05 13.29 21.45 0.28 -58.77 16 2 C 0.00 -0.22 5.46 84.65 0.46 0.24 16 3 Si 0.97 44.72 29.54 68.60 2.03 46.74 16 4 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16 5 H -0.29 -12.90 7.11 99.48 0.71 -12.20 16 6 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 7 C -0.54 -31.60 9.11 25.60 0.23 -31.37 16 8 H 0.07 3.66 7.74 -2.91 -0.02 3.64 16 9 C 0.03 1.58 5.23 29.85 0.16 1.73 16 10 C 0.09 3.74 5.62 86.31 0.49 4.23 16 11 N -0.70 -27.72 6.12 -517.92 -3.17 -30.90 16 12 C 0.05 1.50 5.36 85.56 0.46 1.96 16 13 C 0.52 16.46 7.89 87.66 0.69 17.15 16 14 O -0.58 -24.08 16.46 -3.04 -0.05 -24.13 16 15 N -0.62 -14.07 3.33 -811.80 -2.70 -16.77 16 16 C 0.09 1.15 6.48 86.73 0.56 1.71 16 17 C -0.12 -0.96 6.95 31.78 0.22 -0.73 16 18 C -0.12 -1.28 7.08 31.98 0.23 -1.06 16 19 C 0.09 1.78 6.91 86.85 0.60 2.38 16 20 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 21 H -0.01 -0.63 8.14 -2.38 -0.02 -0.65 16 22 H -0.01 -0.77 8.14 -2.38 -0.02 -0.79 16 23 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 24 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 25 H 0.34 14.24 8.43 -89.70 -0.76 13.48 16 26 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 27 H 0.12 2.92 8.14 -2.39 -0.02 2.90 16 28 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.09 0.53 8.14 -2.39 -0.02 0.52 16 31 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 35 H 0.06 1.30 8.03 -2.39 -0.02 1.28 16 Total: -1.00 -76.09 294.51 0.78 -75.30 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: 0.30 Total: 12.28 kcal Atomic # 6 Polarization: -7.85 SS G_CDS: 4.10 Total: -3.75 kcal Atomic # 7 Polarization: -100.85 SS G_CDS: -5.59 Total: -106.44 kcal Atomic # 8 Polarization: -24.08 SS G_CDS: -0.05 Total: -24.13 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.74 kcal Total: -76.09 0.78 -75.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161596065.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.512 kcal (2) G-P(sol) polarization free energy of solvation -76.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds