Wall clock time and date at job start Mon Mar 30 2020 03:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46785 * 2 1 4 4 C 1.52996 * 109.47311 * 240.00126 * 2 1 3 5 5 N 1.46498 * 109.47071 * 119.99519 * 2 1 3 6 6 C 1.46010 * 118.53856 * 0.40771 * 5 2 1 7 7 C 1.52986 * 110.04409 * 161.85910 * 6 5 2 8 8 N 1.47192 * 108.73010 * 50.28892 * 7 6 5 9 9 C 1.46903 * 110.17288 * 291.00246 * 8 7 6 10 10 H 1.08999 * 109.38348 * 290.14387 * 9 8 7 11 11 C 1.50705 * 109.38206 * 170.45566 * 9 8 7 12 12 H 1.08004 * 119.99695 * 239.99606 * 11 9 8 13 13 C 1.37876 * 120.00068 * 59.99924 * 11 9 8 14 14 N 1.31509 * 119.99939 * 359.97438 * 13 11 9 15 15 Si 1.86802 * 119.99660 * 179.97438 * 13 11 9 16 16 H 1.48494 * 109.47038 * 60.00344 * 15 13 11 17 17 H 1.48498 * 109.46660 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.46927 * 299.99708 * 15 13 11 19 19 C 1.33722 * 118.53837 * 180.42384 * 5 2 1 20 20 O 1.21285 * 118.62015 * 1.66755 * 19 5 2 21 21 H 1.09000 * 109.47361 * 300.00063 * 1 2 3 22 22 H 1.08998 * 109.47371 * 60.00632 * 1 2 3 23 23 H 1.09005 * 109.47119 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46908 * 186.63002 * 3 2 1 25 25 H 1.09001 * 109.47456 * 306.63102 * 3 2 1 26 26 H 1.09000 * 109.47197 * 66.63084 * 3 2 1 27 27 H 1.08999 * 109.47052 * 299.99604 * 4 2 1 28 28 H 1.08995 * 109.47528 * 59.99850 * 4 2 1 29 29 H 1.09004 * 109.46991 * 179.97438 * 4 2 1 30 30 H 1.08998 * 109.37648 * 41.67768 * 6 5 2 31 31 H 1.09002 * 109.37039 * 282.03172 * 6 5 2 32 32 H 1.08999 * 109.59272 * 290.51347 * 7 6 5 33 33 H 1.09000 * 109.59262 * 170.06116 * 7 6 5 34 34 H 1.00899 * 110.99900 * 54.36682 * 8 7 6 35 35 H 0.96996 * 119.99955 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 2.0183 -0.6905 1.1962 6 6 1.0415 -1.2409 2.1315 7 6 1.7088 -2.2784 3.0364 8 7 2.9323 -1.6912 3.6065 9 6 3.9427 -1.5071 2.5562 10 1 4.3107 -2.4810 2.2335 11 6 5.0901 -0.6970 3.1025 12 1 5.3480 0.2485 2.6486 13 6 5.8106 -1.1629 4.1818 14 7 5.4963 -2.3139 4.7348 15 14 7.2332 -0.1590 4.8584 16 1 6.7353 1.1668 5.3049 17 1 7.8398 -0.8740 6.0100 18 1 8.2559 0.0276 3.7980 19 6 3.3388 -0.7883 1.3831 20 8 4.0799 -0.2754 0.5716 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5137 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 3.1235 1.4449 -0.1187 25 1 1.5829 1.9895 -0.8247 26 1 1.7767 1.9210 0.9434 27 1 1.6767 -1.7489 -1.2492 28 1 1.6767 -0.2074 -2.1392 29 1 3.1301 -0.7208 -1.2494 30 1 0.2334 -1.7140 1.5737 31 1 0.6336 -0.4363 2.7434 32 1 1.9653 -3.1620 2.4521 33 1 1.0269 -2.5545 3.8407 34 1 2.7316 -0.8189 4.0721 35 1 6.0034 -2.6418 5.4938 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219486634.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:58 Heat of formation + Delta-G solvation = -25.316449 kcal Electronic energy + Delta-G solvation = -16912.250140 eV Core-core repulsion = 14331.468697 eV Total energy + Delta-G solvation = -2580.781443 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.08783 -36.14121 -35.78602 -32.75691 -30.91292 -29.00704 -27.49050 -26.94129 -25.46732 -23.21137 -21.94267 -20.14617 -17.75196 -16.61986 -16.12232 -15.57174 -14.87765 -14.45443 -13.81995 -13.73199 -13.42759 -13.16810 -13.13689 -12.54904 -12.03882 -11.95353 -11.57915 -11.48010 -11.47168 -11.12863 -10.87305 -10.81992 -10.71870 -10.65607 -10.45381 -10.00177 -9.28138 -8.88146 -8.47257 -7.99678 -6.94635 -5.95117 -4.07750 3.36937 3.40453 3.43705 3.60382 3.70590 4.48306 5.00194 5.11889 5.17491 5.31200 5.38848 5.47701 5.66742 5.71072 5.78235 5.86366 5.93959 5.98175 6.02037 6.03597 6.23577 6.28739 6.30305 6.45976 6.64560 6.73203 7.14533 7.28390 7.76116 7.91676 8.28358 8.41069 8.67396 9.02648 9.24502 9.59714 11.09968 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.037629 B = 0.009161 C = 0.008054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.932755 B = 3055.744347 C = 3475.837807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.163 3.837 3 C -0.159 4.159 4 C -0.159 4.159 5 N -0.612 5.612 6 C 0.078 3.922 7 C 0.036 3.964 8 N -0.643 5.643 9 C 0.215 3.785 10 H 0.069 0.931 11 C -0.525 4.525 12 H 0.064 0.936 13 C 0.080 3.920 14 N -0.850 5.850 15 Si 0.894 3.106 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.276 1.276 19 C 0.492 3.508 20 O -0.548 6.548 21 H 0.059 0.941 22 H 0.063 0.937 23 H 0.060 0.940 24 H 0.083 0.917 25 H 0.051 0.949 26 H 0.049 0.951 27 H 0.048 0.952 28 H 0.054 0.946 29 H 0.081 0.919 30 H 0.065 0.935 31 H 0.052 0.948 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.331 0.669 35 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.041 2.094 -5.620 12.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.078 3.922 3 C -0.217 4.217 4 C -0.217 4.217 5 N -0.349 5.349 6 C -0.048 4.048 7 C -0.095 4.095 8 N -0.273 5.273 9 C 0.104 3.896 10 H 0.087 0.913 11 C -0.564 4.564 12 H 0.082 0.918 13 C -0.127 4.127 14 N -0.484 5.484 15 Si 0.721 3.279 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.202 1.202 19 C 0.281 3.719 20 O -0.425 6.425 21 H 0.078 0.922 22 H 0.082 0.918 23 H 0.078 0.922 24 H 0.102 0.898 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.100 0.900 30 H 0.083 0.917 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.095 0.905 34 H 0.149 0.851 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.314 1.588 -5.652 11.868 hybrid contribution 0.111 1.235 -0.084 1.243 sum -10.203 2.823 -5.736 12.041 Atomic orbital electron populations 1.22128 0.94580 1.01943 1.02125 1.20312 0.92994 0.92732 0.86162 1.22207 1.04240 0.94546 1.00676 1.22190 1.04209 0.99313 0.96028 1.47932 1.06465 1.57618 1.22853 1.22295 0.92545 0.97599 0.92327 1.22438 0.93974 0.96693 0.96355 1.61277 1.05908 1.31610 1.28475 1.19331 0.90496 0.96328 0.83407 0.91333 1.20733 1.13308 1.06735 1.15610 0.91769 1.24956 0.96625 0.94830 0.96244 1.70097 1.38465 1.18239 1.21645 0.86648 0.82660 0.80217 0.78345 1.20272 1.21289 1.20181 1.22586 0.80384 0.79653 0.89240 1.90458 1.59010 1.47076 1.45918 0.92232 0.91829 0.92150 0.89799 0.93026 0.93219 0.93336 0.92749 0.90023 0.91710 0.93024 0.91367 0.90502 0.85070 0.93125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 7.34 37.16 0.27 -1.55 16 2 C 0.16 2.60 1.03 -131.82 -0.14 2.47 16 3 C -0.16 -2.62 8.25 37.16 0.31 -2.31 16 4 C -0.16 -2.53 8.38 37.16 0.31 -2.22 16 5 N -0.61 -11.33 2.80 -159.71 -0.45 -11.78 16 6 C 0.08 1.20 5.37 -4.31 -0.02 1.18 16 7 C 0.04 0.63 6.65 -3.67 -0.02 0.61 16 8 N -0.64 -14.41 6.00 -109.21 -0.66 -15.06 16 9 C 0.21 5.43 2.56 -70.23 -0.18 5.25 16 10 H 0.07 1.92 8.14 -51.93 -0.42 1.50 16 11 C -0.52 -14.72 8.31 -34.44 -0.29 -15.01 16 12 H 0.06 1.88 7.40 -52.48 -0.39 1.50 16 13 C 0.08 2.23 5.39 -17.82 -0.10 2.13 16 14 N -0.85 -24.12 12.77 55.43 0.71 -23.41 16 15 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 16 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 17 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 C 0.49 11.36 6.53 -11.67 -0.08 11.28 16 20 O -0.55 -13.94 11.95 5.55 0.07 -13.87 16 21 H 0.06 0.70 7.66 -51.93 -0.40 0.30 16 22 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 23 H 0.06 0.68 6.78 -51.93 -0.35 0.33 16 24 H 0.08 1.66 6.11 -51.93 -0.32 1.34 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.08 1.56 6.08 -51.93 -0.32 1.25 16 30 H 0.06 0.84 6.16 -51.93 -0.32 0.52 16 31 H 0.05 0.76 8.04 -51.93 -0.42 0.34 16 32 H 0.07 1.22 8.08 -51.93 -0.42 0.80 16 33 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.33 7.42 8.56 -39.29 -0.34 7.09 16 35 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 274.31 15.07 4.13 4.13 Total: -1.00 -30.13 274.31 -6.50 -36.63 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -5.36 Total: 5.02 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: 0.07 Total: 1.83 kcal Atomic # 7 Polarization: -49.85 SS G_CDS: -0.39 Total: -50.25 kcal Atomic # 8 Polarization: -13.94 SS G_CDS: 0.07 Total: -13.87 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -30.13 -6.50 -36.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219486634.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.314 kcal (2) G-P(sol) polarization free energy of solvation -30.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds