Wall clock time and date at job start Mon Mar 30 2020 03:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46785 * 2 1 4 4 C 1.52996 * 109.47311 * 240.00126 * 2 1 3 5 5 N 1.46498 * 109.47071 * 119.99519 * 2 1 3 6 6 C 1.46010 * 118.53856 * 0.40771 * 5 2 1 7 7 C 1.52986 * 110.04409 * 161.85910 * 6 5 2 8 8 N 1.47192 * 108.73010 * 50.28892 * 7 6 5 9 9 C 1.46903 * 110.17288 * 291.00246 * 8 7 6 10 10 H 1.08999 * 109.38348 * 290.14387 * 9 8 7 11 11 C 1.50705 * 109.38206 * 170.45566 * 9 8 7 12 12 H 1.08004 * 119.99695 * 239.99606 * 11 9 8 13 13 C 1.37876 * 120.00068 * 59.99924 * 11 9 8 14 14 N 1.31509 * 119.99939 * 359.97438 * 13 11 9 15 15 Si 1.86802 * 119.99660 * 179.97438 * 13 11 9 16 16 H 1.48494 * 109.47038 * 60.00344 * 15 13 11 17 17 H 1.48498 * 109.46660 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.46927 * 299.99708 * 15 13 11 19 19 C 1.33722 * 118.53837 * 180.42384 * 5 2 1 20 20 O 1.21285 * 118.62015 * 1.66755 * 19 5 2 21 21 H 1.09000 * 109.47361 * 300.00063 * 1 2 3 22 22 H 1.08998 * 109.47371 * 60.00632 * 1 2 3 23 23 H 1.09005 * 109.47119 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46908 * 186.63002 * 3 2 1 25 25 H 1.09001 * 109.47456 * 306.63102 * 3 2 1 26 26 H 1.09000 * 109.47197 * 66.63084 * 3 2 1 27 27 H 1.08999 * 109.47052 * 299.99604 * 4 2 1 28 28 H 1.08995 * 109.47528 * 59.99850 * 4 2 1 29 29 H 1.09004 * 109.46991 * 179.97438 * 4 2 1 30 30 H 1.08998 * 109.37648 * 41.67768 * 6 5 2 31 31 H 1.09002 * 109.37039 * 282.03172 * 6 5 2 32 32 H 1.08999 * 109.59272 * 290.51347 * 7 6 5 33 33 H 1.09000 * 109.59262 * 170.06116 * 7 6 5 34 34 H 1.00899 * 110.99900 * 54.36682 * 8 7 6 35 35 H 0.96996 * 119.99955 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 2.0183 -0.6905 1.1962 6 6 1.0415 -1.2409 2.1315 7 6 1.7088 -2.2784 3.0364 8 7 2.9323 -1.6912 3.6065 9 6 3.9427 -1.5071 2.5562 10 1 4.3107 -2.4810 2.2335 11 6 5.0901 -0.6970 3.1025 12 1 5.3480 0.2485 2.6486 13 6 5.8106 -1.1629 4.1818 14 7 5.4963 -2.3139 4.7348 15 14 7.2332 -0.1590 4.8584 16 1 6.7353 1.1668 5.3049 17 1 7.8398 -0.8740 6.0100 18 1 8.2559 0.0276 3.7980 19 6 3.3388 -0.7883 1.3831 20 8 4.0799 -0.2754 0.5716 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5137 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 3.1235 1.4449 -0.1187 25 1 1.5829 1.9895 -0.8247 26 1 1.7767 1.9210 0.9434 27 1 1.6767 -1.7489 -1.2492 28 1 1.6767 -0.2074 -2.1392 29 1 3.1301 -0.7208 -1.2494 30 1 0.2334 -1.7140 1.5737 31 1 0.6336 -0.4363 2.7434 32 1 1.9653 -3.1620 2.4521 33 1 1.0269 -2.5545 3.8407 34 1 2.7316 -0.8189 4.0721 35 1 6.0034 -2.6418 5.4938 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219486634.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:58 Heat of formation + Delta-G solvation = -47.276684 kcal Electronic energy + Delta-G solvation = -16913.202407 eV Core-core repulsion = 14331.468697 eV Total energy + Delta-G solvation = -2581.733710 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.66968 -37.67889 -37.47131 -34.69507 -32.54739 -30.68228 -28.78133 -28.22857 -27.15104 -25.06462 -23.47604 -21.62145 -19.39413 -18.58118 -17.67994 -17.10239 -16.43598 -16.22508 -15.58567 -15.40810 -14.93319 -14.70114 -14.48680 -13.92674 -13.59851 -13.29296 -12.98301 -12.93625 -12.76740 -12.73070 -12.67422 -12.46359 -12.18373 -12.11365 -12.00061 -11.79330 -11.28630 -10.68481 -10.59283 -9.48937 -8.66775 -8.07487 -6.27507 1.42066 1.44106 1.51787 1.90662 2.14435 2.47077 3.14848 3.71424 3.84065 3.99399 4.08863 4.15090 4.28412 4.37008 4.54701 4.65781 4.68366 4.72416 4.82783 4.89181 4.95127 4.98751 5.07363 5.15969 5.20050 5.33998 5.42691 5.69383 5.82305 5.92656 6.36569 6.74247 6.89032 6.91370 7.41829 7.51815 8.96683 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.037629 B = 0.009161 C = 0.008054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.932755 B = 3055.744347 C = 3475.837807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.152 3.848 3 C -0.155 4.155 4 C -0.155 4.155 5 N -0.606 5.606 6 C 0.078 3.922 7 C 0.036 3.964 8 N -0.658 5.658 9 C 0.218 3.782 10 H 0.029 0.971 11 C -0.547 4.547 12 H 0.040 0.960 13 C 0.041 3.959 14 N -0.872 5.872 15 Si 0.954 3.046 16 H -0.271 1.271 17 H -0.275 1.275 18 H -0.281 1.281 19 C 0.488 3.512 20 O -0.583 6.583 21 H 0.068 0.932 22 H 0.087 0.913 23 H 0.074 0.926 24 H 0.041 0.959 25 H 0.083 0.917 26 H 0.044 0.956 27 H 0.054 0.946 28 H 0.083 0.917 29 H 0.039 0.961 30 H 0.105 0.895 31 H 0.071 0.929 32 H 0.058 0.942 33 H 0.109 0.891 34 H 0.330 0.670 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.611 2.577 -5.698 14.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.068 3.932 3 C -0.213 4.213 4 C -0.213 4.213 5 N -0.340 5.340 6 C -0.046 4.046 7 C -0.094 4.094 8 N -0.287 5.287 9 C 0.106 3.894 10 H 0.046 0.954 11 C -0.586 4.586 12 H 0.058 0.942 13 C -0.164 4.164 14 N -0.507 5.507 15 Si 0.779 3.221 16 H -0.196 1.196 17 H -0.200 1.200 18 H -0.207 1.207 19 C 0.277 3.723 20 O -0.462 6.462 21 H 0.087 0.913 22 H 0.106 0.894 23 H 0.093 0.907 24 H 0.060 0.940 25 H 0.102 0.898 26 H 0.063 0.937 27 H 0.073 0.927 28 H 0.102 0.898 29 H 0.058 0.942 30 H 0.123 0.877 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.127 0.873 34 H 0.148 0.852 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.941 2.064 -5.726 14.301 hybrid contribution 0.852 1.059 -0.109 1.364 sum -12.089 3.123 -5.835 13.782 Atomic orbital electron populations 1.22082 0.90474 1.03433 1.03853 1.20657 0.95981 0.91796 0.84749 1.22144 1.01776 0.95620 1.01724 1.22128 1.01506 1.00252 0.97421 1.47914 1.05251 1.56744 1.24071 1.22457 0.92267 0.97711 0.92180 1.22547 0.92575 0.96574 0.97696 1.60989 1.07843 1.31610 1.28291 1.18949 0.91199 0.94161 0.85062 0.95356 1.20850 1.15265 1.06336 1.16114 0.94159 1.25597 0.98717 0.95815 0.96282 1.70184 1.39402 1.19223 1.21911 0.85713 0.79543 0.79120 0.77717 1.19619 1.19966 1.20715 1.22088 0.82221 0.79755 0.88269 1.90450 1.60525 1.48578 1.46679 0.91334 0.89396 0.90721 0.93951 0.89782 0.93679 0.92661 0.89821 0.94209 0.87687 0.91111 0.92322 0.87311 0.85235 0.92923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 7.34 71.98 0.53 -2.19 16 2 C 0.15 4.51 1.03 3.60 0.00 4.51 16 3 C -0.15 -4.91 8.25 71.98 0.59 -4.32 16 4 C -0.16 -4.69 8.38 71.98 0.60 -4.08 16 5 N -0.61 -21.67 2.80 -778.20 -2.18 -23.85 16 6 C 0.08 2.15 5.37 86.47 0.46 2.61 16 7 C 0.04 1.19 6.65 86.24 0.57 1.76 16 8 N -0.66 -29.68 6.00 -499.42 -3.00 -32.68 16 9 C 0.22 11.46 2.56 43.28 0.11 11.57 16 10 H 0.03 1.71 8.14 -2.39 -0.02 1.69 16 11 C -0.55 -31.99 8.31 25.60 0.21 -31.78 16 12 H 0.04 2.49 7.40 -2.91 -0.02 2.47 16 13 C 0.04 2.31 5.39 84.66 0.46 2.76 16 14 N -0.87 -50.40 12.77 21.45 0.27 -50.13 16 15 Si 0.95 45.00 29.54 68.60 2.03 47.02 16 16 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 17 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 18 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 19 C 0.49 23.23 6.53 87.68 0.57 23.80 16 20 O -0.58 -31.19 11.95 -3.04 -0.04 -31.23 16 21 H 0.07 1.24 7.66 -2.39 -0.02 1.22 16 22 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 23 H 0.07 1.26 6.78 -2.38 -0.02 1.24 16 24 H 0.04 1.70 6.11 -2.38 -0.01 1.69 16 25 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 26 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.04 1.54 6.08 -2.38 -0.01 1.53 16 30 H 0.11 2.17 6.16 -2.39 -0.01 2.16 16 31 H 0.07 1.78 8.04 -2.39 -0.02 1.76 16 32 H 0.06 2.05 8.08 -2.39 -0.02 2.03 16 33 H 0.11 2.92 8.14 -2.39 -0.02 2.90 16 34 H 0.33 14.82 8.56 -89.70 -0.77 14.06 16 35 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 Total: -1.00 -69.19 274.31 1.52 -67.67 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: 0.31 Total: 18.53 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: 4.12 Total: 4.65 kcal Atomic # 7 Polarization: -101.75 SS G_CDS: -4.90 Total: -106.65 kcal Atomic # 8 Polarization: -31.19 SS G_CDS: -0.04 Total: -31.23 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.02 kcal Total: -69.19 1.52 -67.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219486634.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.392 kcal (2) G-P(sol) polarization free energy of solvation -69.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds