Wall clock time and date at job start Mon Mar 30 2020 03:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.47192 * 111.00332 * 2 1 4 4 C 1.52970 * 108.74176 * 192.35298 * 3 2 1 5 5 C 1.52993 * 109.37355 * 189.54312 * 4 3 2 6 6 C 1.53003 * 109.28444 * 69.83256 * 4 3 2 7 7 N 1.46013 * 110.04155 * 309.71745 * 4 3 2 8 8 C 1.46502 * 118.53323 * 198.14133 * 7 4 3 9 9 C 1.33706 * 122.92870 * 18.16202 * 7 4 3 10 10 O 1.21285 * 118.62464 * 178.31273 * 9 7 4 11 11 C 1.46901 * 110.99768 * 122.88694 * 2 1 3 12 12 H 1.09001 * 109.38878 * 306.48699 * 11 2 1 13 13 C 1.50702 * 109.38615 * 66.17766 * 11 2 1 14 14 H 1.08000 * 120.00044 * 35.26920 * 13 11 2 15 15 C 1.37878 * 119.99977 * 215.26094 * 13 11 2 16 16 N 1.31517 * 119.99936 * 184.78246 * 15 13 11 17 17 Si 1.86801 * 120.00105 * 4.78782 * 15 13 11 18 18 H 1.48495 * 109.47086 * 85.38281 * 17 15 13 19 19 H 1.48502 * 109.46943 * 205.38148 * 17 15 13 20 20 H 1.48505 * 109.47072 * 325.38179 * 17 15 13 21 21 H 1.09003 * 109.47038 * 293.16240 * 1 2 3 22 22 H 1.08989 * 109.47653 * 173.15943 * 1 2 3 23 23 H 1.09003 * 109.46761 * 53.15696 * 1 2 3 24 24 H 1.09003 * 109.59066 * 312.13041 * 3 2 1 25 25 H 1.08994 * 109.59888 * 72.59068 * 3 2 1 26 26 H 1.09008 * 109.47317 * 180.58097 * 5 4 3 27 27 H 1.09003 * 109.47234 * 300.57784 * 5 4 3 28 28 H 1.09003 * 109.47686 * 60.57989 * 5 4 3 29 29 H 1.09003 * 109.47125 * 299.47160 * 6 4 3 30 30 H 1.09001 * 109.46847 * 59.47267 * 6 4 3 31 31 H 1.09002 * 109.46756 * 179.47326 * 6 4 3 32 32 H 1.09004 * 109.46995 * 180.02562 * 8 7 4 33 33 H 1.08993 * 109.47323 * 300.01894 * 8 7 4 34 34 H 1.09005 * 109.47086 * 60.02135 * 8 7 4 35 35 H 0.97000 * 120.00202 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9965 1.3741 0.0000 4 6 3.4937 1.3258 -0.3099 5 6 4.1043 2.7098 -0.0811 6 6 3.6945 0.9176 -1.7708 7 7 4.1536 0.3556 0.5592 8 6 5.6079 0.4334 0.7177 9 6 3.4897 -0.6010 1.2164 10 8 4.1200 -1.3854 1.8935 11 6 1.9954 -0.7447 1.1517 12 1 1.5542 -0.3529 2.0682 13 6 1.6386 -2.2020 1.0105 14 1 1.6183 -2.6608 0.0330 15 6 1.3382 -2.9498 2.1293 16 7 1.1190 -4.2417 2.0174 17 14 1.2425 -2.1278 3.8040 18 1 -0.1167 -1.5631 4.0012 19 1 1.5207 -3.1300 4.8639 20 1 2.2473 -1.0369 3.8782 21 1 -0.3633 0.4042 0.9449 22 1 -0.3634 -1.0202 -0.1224 23 1 -0.3633 0.6162 -0.8225 24 1 1.4844 1.9622 -0.7616 25 1 1.8408 1.8256 0.9798 26 1 5.1694 2.6797 -0.3114 27 1 3.6128 3.4354 -0.7293 28 1 3.9659 3.0005 0.9603 29 1 3.2637 -0.0702 -1.9345 30 1 3.2024 1.6409 -2.4210 31 1 4.7603 0.8913 -1.9974 32 1 5.9425 -0.3545 1.3925 33 1 6.0865 0.3076 -0.2534 34 1 5.8767 1.4052 1.1321 35 1 0.9074 -4.7677 2.8044 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219489075.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:28 Heat of formation + Delta-G solvation = -16.071555 kcal Electronic energy + Delta-G solvation = -17137.817796 eV Core-core repulsion = 14557.437242 eV Total energy + Delta-G solvation = -2580.380554 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.02377 -36.73631 -35.64401 -32.38761 -31.59577 -28.78029 -27.66470 -26.99897 -25.32221 -23.66851 -21.50137 -20.75653 -17.35682 -17.19033 -16.31800 -15.72854 -14.80868 -14.40222 -14.02663 -13.89956 -13.44887 -13.22496 -12.79172 -12.55713 -12.29972 -12.23055 -11.94173 -11.58342 -11.48005 -11.24740 -11.19219 -10.93353 -10.83114 -10.48593 -10.33046 -9.91546 -9.46522 -8.79816 -8.46126 -8.01504 -7.56391 -6.11603 -4.13906 3.27034 3.37893 3.45272 3.65342 3.74366 4.43410 4.56336 4.94555 5.09035 5.25459 5.32953 5.57503 5.62678 5.73543 5.83070 5.83335 5.89634 5.95644 6.01353 6.11324 6.16805 6.17880 6.25125 6.39652 6.54806 6.70481 6.79357 7.06041 7.36452 7.64223 7.87219 8.27749 8.50935 8.97153 9.24101 9.51627 11.00086 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.031451 B = 0.011794 C = 0.010251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.067851 B = 2373.577163 C = 2730.667864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.525 5.525 3 C 0.041 3.959 4 C 0.175 3.825 5 C -0.155 4.155 6 C -0.148 4.148 7 N -0.614 5.614 8 C 0.074 3.926 9 C 0.518 3.482 10 O -0.538 6.538 11 C 0.176 3.824 12 H 0.034 0.966 13 C -0.492 4.492 14 H 0.085 0.915 15 C 0.091 3.909 16 N -0.884 5.884 17 Si 0.875 3.125 18 H -0.279 1.279 19 H -0.284 1.284 20 H -0.265 1.265 21 H 0.014 0.986 22 H 0.085 0.915 23 H 0.052 0.948 24 H 0.083 0.917 25 H 0.031 0.969 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.057 0.943 29 H 0.075 0.925 30 H 0.057 0.943 31 H 0.048 0.952 32 H 0.084 0.916 33 H 0.048 0.952 34 H 0.048 0.952 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.776 14.328 -4.709 15.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.251 5.251 3 C -0.088 4.088 4 C 0.089 3.911 5 C -0.213 4.213 6 C -0.207 4.207 7 N -0.350 5.350 8 C -0.070 4.070 9 C 0.307 3.693 10 O -0.413 6.413 11 C 0.067 3.933 12 H 0.051 0.949 13 C -0.530 4.530 14 H 0.103 0.897 15 C -0.114 4.114 16 N -0.520 5.520 17 Si 0.703 3.297 18 H -0.206 1.206 19 H -0.210 1.210 20 H -0.190 1.190 21 H 0.032 0.968 22 H 0.104 0.896 23 H 0.071 0.929 24 H 0.101 0.899 25 H 0.050 0.950 26 H 0.081 0.919 27 H 0.085 0.915 28 H 0.076 0.924 29 H 0.094 0.906 30 H 0.076 0.924 31 H 0.067 0.933 32 H 0.103 0.897 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.206 13.449 -4.653 14.588 hybrid contribution -0.198 0.817 1.616 1.822 sum 3.007 14.266 -3.037 14.893 Atomic orbital electron populations 1.22207 0.87089 1.03317 0.98282 1.62563 1.08229 1.10036 1.44253 1.22508 0.93700 0.92457 1.00096 1.20255 0.92100 0.87984 0.90789 1.22152 1.01288 0.95839 1.02032 1.22095 1.00918 1.03251 0.94388 1.47768 1.06972 1.32256 1.47967 1.21561 0.82102 1.01855 1.01433 1.21679 0.92032 0.78252 0.77322 1.90559 1.68004 1.41317 1.41412 1.19850 0.87300 0.97254 0.88921 0.94851 1.20402 1.46828 0.89799 0.95983 0.89677 1.24923 0.93311 0.94589 0.98566 1.69866 1.46291 1.05545 1.30327 0.86868 0.77972 0.80248 0.84650 1.20559 1.20965 1.18966 0.96755 0.89611 0.92923 0.89913 0.95044 0.91936 0.91508 0.92435 0.90599 0.92395 0.93335 0.89698 0.93329 0.93353 0.92338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.71 9.33 60.06 0.56 1.27 16 2 N -0.53 -10.66 4.34 -237.73 -1.03 -11.69 16 3 C 0.04 0.67 4.24 -3.68 -0.02 0.66 16 4 C 0.17 2.70 0.91 -132.10 -0.12 2.58 16 5 C -0.15 -1.81 7.75 37.15 0.29 -1.52 16 6 C -0.15 -2.12 8.56 37.16 0.32 -1.80 16 7 N -0.61 -11.90 2.73 -167.44 -0.46 -12.35 16 8 C 0.07 1.21 9.48 59.85 0.57 1.78 16 9 C 0.52 12.72 7.12 -11.68 -0.08 12.64 16 10 O -0.54 -15.12 15.04 5.55 0.08 -15.03 16 11 C 0.18 4.35 1.55 -70.23 -0.11 4.24 16 12 H 0.03 0.86 5.21 -51.93 -0.27 0.59 16 13 C -0.49 -14.13 7.58 -34.44 -0.26 -14.39 16 14 H 0.09 2.67 8.06 -52.49 -0.42 2.24 16 15 C 0.09 2.70 5.47 -17.82 -0.10 2.60 16 16 N -0.88 -27.38 13.96 55.43 0.77 -26.60 16 17 Si 0.88 22.80 26.53 -169.99 -4.51 18.29 16 18 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.28 -7.37 7.11 56.52 0.40 -6.96 16 20 H -0.26 -7.01 6.80 56.52 0.38 -6.62 16 21 H 0.01 0.25 8.09 -51.93 -0.42 -0.17 16 22 H 0.09 1.74 7.41 -51.94 -0.38 1.35 16 23 H 0.05 0.77 7.98 -51.93 -0.41 0.36 16 24 H 0.08 1.09 7.91 -51.93 -0.41 0.68 16 25 H 0.03 0.52 8.05 -51.93 -0.42 0.10 16 26 H 0.06 0.67 6.94 -51.92 -0.36 0.31 16 27 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.07 1.32 7.88 -51.93 -0.41 0.91 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.64 7.63 -51.93 -0.40 0.24 16 32 H 0.08 1.58 6.67 -51.93 -0.35 1.24 16 33 H 0.05 0.70 7.65 -51.93 -0.40 0.30 16 34 H 0.05 0.66 6.95 -51.93 -0.36 0.30 16 35 H 0.27 7.75 8.31 -40.82 -0.34 7.41 16 LS Contribution 274.79 15.07 4.14 4.14 Total: -1.00 -33.26 274.79 -5.39 -38.65 By element: Atomic # 1 Polarization: 1.98 SS G_CDS: -5.43 Total: -3.45 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: 1.05 Total: 8.05 kcal Atomic # 7 Polarization: -49.93 SS G_CDS: -0.72 Total: -50.65 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: 0.08 Total: -15.03 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -4.51 Total: 18.29 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -33.26 -5.39 -38.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219489075.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.578 kcal (2) G-P(sol) polarization free energy of solvation -33.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds