Wall clock time and date at job start Mon Mar 30 2020 03:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.47192 * 111.00332 * 2 1 4 4 C 1.52970 * 108.74176 * 192.35298 * 3 2 1 5 5 C 1.52993 * 109.37355 * 189.54312 * 4 3 2 6 6 C 1.53003 * 109.28444 * 69.83256 * 4 3 2 7 7 N 1.46013 * 110.04155 * 309.71745 * 4 3 2 8 8 C 1.46502 * 118.53323 * 198.14133 * 7 4 3 9 9 C 1.33706 * 122.92870 * 18.16202 * 7 4 3 10 10 O 1.21285 * 118.62464 * 178.31273 * 9 7 4 11 11 C 1.46901 * 110.99768 * 122.88694 * 2 1 3 12 12 H 1.09001 * 109.38878 * 306.48699 * 11 2 1 13 13 C 1.50702 * 109.38615 * 66.17766 * 11 2 1 14 14 H 1.08000 * 120.00044 * 35.26920 * 13 11 2 15 15 C 1.37878 * 119.99977 * 215.26094 * 13 11 2 16 16 N 1.31517 * 119.99936 * 184.78246 * 15 13 11 17 17 Si 1.86801 * 120.00105 * 4.78782 * 15 13 11 18 18 H 1.48495 * 109.47086 * 85.38281 * 17 15 13 19 19 H 1.48502 * 109.46943 * 205.38148 * 17 15 13 20 20 H 1.48505 * 109.47072 * 325.38179 * 17 15 13 21 21 H 1.09003 * 109.47038 * 293.16240 * 1 2 3 22 22 H 1.08989 * 109.47653 * 173.15943 * 1 2 3 23 23 H 1.09003 * 109.46761 * 53.15696 * 1 2 3 24 24 H 1.09003 * 109.59066 * 312.13041 * 3 2 1 25 25 H 1.08994 * 109.59888 * 72.59068 * 3 2 1 26 26 H 1.09008 * 109.47317 * 180.58097 * 5 4 3 27 27 H 1.09003 * 109.47234 * 300.57784 * 5 4 3 28 28 H 1.09003 * 109.47686 * 60.57989 * 5 4 3 29 29 H 1.09003 * 109.47125 * 299.47160 * 6 4 3 30 30 H 1.09001 * 109.46847 * 59.47267 * 6 4 3 31 31 H 1.09002 * 109.46756 * 179.47326 * 6 4 3 32 32 H 1.09004 * 109.46995 * 180.02562 * 8 7 4 33 33 H 1.08993 * 109.47323 * 300.01894 * 8 7 4 34 34 H 1.09005 * 109.47086 * 60.02135 * 8 7 4 35 35 H 0.97000 * 120.00202 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9965 1.3741 0.0000 4 6 3.4937 1.3258 -0.3099 5 6 4.1043 2.7098 -0.0811 6 6 3.6945 0.9176 -1.7708 7 7 4.1536 0.3556 0.5592 8 6 5.6079 0.4334 0.7177 9 6 3.4897 -0.6010 1.2164 10 8 4.1200 -1.3854 1.8935 11 6 1.9954 -0.7447 1.1517 12 1 1.5542 -0.3529 2.0682 13 6 1.6386 -2.2020 1.0105 14 1 1.6183 -2.6608 0.0330 15 6 1.3382 -2.9498 2.1293 16 7 1.1190 -4.2417 2.0174 17 14 1.2425 -2.1278 3.8040 18 1 -0.1167 -1.5631 4.0012 19 1 1.5207 -3.1300 4.8639 20 1 2.2473 -1.0369 3.8782 21 1 -0.3633 0.4042 0.9449 22 1 -0.3634 -1.0202 -0.1224 23 1 -0.3633 0.6162 -0.8225 24 1 1.4844 1.9622 -0.7616 25 1 1.8408 1.8256 0.9798 26 1 5.1694 2.6797 -0.3114 27 1 3.6128 3.4354 -0.7293 28 1 3.9659 3.0005 0.9603 29 1 3.2637 -0.0702 -1.9345 30 1 3.2024 1.6409 -2.4210 31 1 4.7603 0.8913 -1.9974 32 1 5.9425 -0.3545 1.3925 33 1 6.0865 0.3076 -0.2534 34 1 5.8767 1.4052 1.1321 35 1 0.9074 -4.7677 2.8044 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219489075.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:28 Heat of formation + Delta-G solvation = -41.906187 kcal Electronic energy + Delta-G solvation = -17138.938070 eV Core-core repulsion = 14557.437242 eV Total energy + Delta-G solvation = -2581.500828 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.62677 -38.42569 -37.22722 -34.55817 -33.05165 -30.61255 -29.10015 -28.09060 -26.72628 -25.48922 -23.08866 -22.32787 -19.41042 -18.83541 -17.94821 -17.32004 -16.54626 -16.10115 -15.66547 -15.44755 -15.02134 -14.82770 -14.41850 -13.99720 -13.84927 -13.57707 -13.27709 -13.04584 -12.87497 -12.74297 -12.59248 -12.53753 -12.20939 -12.08443 -12.00383 -11.78959 -11.49445 -10.92869 -10.45397 -9.54935 -9.15928 -8.38688 -6.43659 1.18891 1.27158 1.36136 1.83527 2.17579 2.27699 2.97766 3.14716 3.76271 3.88601 4.10671 4.18131 4.37804 4.49127 4.56414 4.62738 4.68961 4.74984 4.80103 4.85418 4.89146 4.97916 5.02136 5.07038 5.25875 5.26890 5.32927 5.53994 5.72264 5.87099 6.23067 6.42625 6.54847 6.72927 7.23238 7.44519 8.77511 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.031451 B = 0.011794 C = 0.010251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.067851 B = 2373.577163 C = 2730.667864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.538 5.538 3 C 0.037 3.963 4 C 0.160 3.840 5 C -0.146 4.146 6 C -0.142 4.142 7 N -0.608 5.608 8 C 0.071 3.929 9 C 0.506 3.494 10 O -0.590 6.590 11 C 0.180 3.820 12 H 0.026 0.974 13 C -0.489 4.489 14 H 0.041 0.959 15 C 0.036 3.964 16 N -0.932 5.932 17 Si 0.933 3.067 18 H -0.251 1.251 19 H -0.284 1.284 20 H -0.272 1.272 21 H 0.019 0.981 22 H 0.052 0.948 23 H 0.096 0.904 24 H 0.125 0.875 25 H 0.033 0.967 26 H 0.076 0.924 27 H 0.099 0.901 28 H 0.054 0.946 29 H 0.036 0.964 30 H 0.093 0.907 31 H 0.059 0.941 32 H 0.055 0.945 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.096 18.304 -5.472 19.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.263 5.263 3 C -0.091 4.091 4 C 0.076 3.924 5 C -0.204 4.204 6 C -0.200 4.200 7 N -0.341 5.341 8 C -0.071 4.071 9 C 0.295 3.705 10 O -0.469 6.469 11 C 0.069 3.931 12 H 0.043 0.957 13 C -0.528 4.528 14 H 0.059 0.941 15 C -0.164 4.164 16 N -0.571 5.571 17 Si 0.758 3.242 18 H -0.176 1.176 19 H -0.209 1.209 20 H -0.197 1.197 21 H 0.037 0.963 22 H 0.070 0.930 23 H 0.114 0.886 24 H 0.143 0.857 25 H 0.051 0.949 26 H 0.095 0.905 27 H 0.118 0.882 28 H 0.073 0.927 29 H 0.055 0.945 30 H 0.111 0.889 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.103 0.897 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.518 17.499 -5.467 18.668 hybrid contribution -0.250 -0.340 1.674 1.726 sum 3.269 17.160 -3.793 17.875 Atomic orbital electron populations 1.22230 0.85974 1.02275 1.00272 1.62391 1.09403 1.12698 1.41824 1.22769 0.94514 0.90084 1.01703 1.20774 0.91794 0.89242 0.90586 1.22112 1.02233 0.93297 1.02744 1.22044 1.01873 1.02016 0.94094 1.47811 1.08327 1.31225 1.46743 1.21748 0.80182 1.02797 1.02391 1.21478 0.92046 0.79094 0.77840 1.90527 1.68870 1.43597 1.43942 1.19584 0.87979 0.95243 0.90288 0.95651 1.20487 1.46027 0.92328 0.93920 0.94115 1.25692 0.93388 0.95040 1.02277 1.69994 1.48676 1.07056 1.31398 0.85956 0.79010 0.79025 0.80224 1.17574 1.20937 1.19710 0.96281 0.92953 0.88580 0.85741 0.94861 0.90508 0.88192 0.92728 0.94514 0.88873 0.92150 0.92640 0.90928 0.89697 0.92213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.41 9.33 127.69 1.19 2.60 16 2 N -0.54 -21.20 4.34 -906.03 -3.93 -25.14 16 3 C 0.04 1.07 4.24 86.24 0.37 1.44 16 4 C 0.16 4.35 0.91 3.68 0.00 4.35 16 5 C -0.15 -2.57 7.75 71.98 0.56 -2.02 16 6 C -0.14 -3.53 8.56 71.98 0.62 -2.91 16 7 N -0.61 -22.49 2.73 -802.65 -2.19 -24.68 16 8 C 0.07 2.17 9.48 127.77 1.21 3.38 16 9 C 0.51 25.08 7.12 87.69 0.62 25.71 16 10 O -0.59 -34.17 15.04 -3.04 -0.05 -34.22 16 11 C 0.18 8.96 1.55 43.29 0.07 9.03 16 12 H 0.03 1.32 5.21 -2.39 -0.01 1.31 16 13 C -0.49 -29.42 7.58 25.60 0.19 -29.23 16 14 H 0.04 2.73 8.06 -2.91 -0.02 2.71 16 15 C 0.04 2.23 5.47 84.65 0.46 2.69 16 16 N -0.93 -60.48 13.96 21.45 0.30 -60.18 16 17 Si 0.93 48.23 26.53 68.60 1.82 50.05 16 18 H -0.25 -11.70 7.11 99.48 0.71 -10.99 16 19 H -0.28 -14.49 7.11 99.48 0.71 -13.78 16 20 H -0.27 -14.28 6.80 99.48 0.68 -13.60 16 21 H 0.02 0.64 8.09 -2.39 -0.02 0.62 16 22 H 0.05 2.16 7.41 -2.39 -0.02 2.14 16 23 H 0.10 2.49 7.98 -2.39 -0.02 2.48 16 24 H 0.12 2.55 7.91 -2.39 -0.02 2.54 16 25 H 0.03 0.97 8.05 -2.39 -0.02 0.95 16 26 H 0.08 1.18 6.94 -2.38 -0.02 1.16 16 27 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.04 1.20 7.88 -2.39 -0.02 1.18 16 30 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.06 1.35 7.63 -2.39 -0.02 1.33 16 32 H 0.05 2.05 6.67 -2.38 -0.02 2.04 16 33 H 0.07 1.87 7.65 -2.39 -0.02 1.85 16 34 H 0.08 1.99 6.95 -2.38 -0.02 1.97 16 35 H 0.27 16.29 8.31 -92.71 -0.77 15.52 16 Total: -1.00 -78.18 274.79 2.27 -75.91 By element: Atomic # 1 Polarization: 2.20 SS G_CDS: 1.03 Total: 3.23 kcal Atomic # 6 Polarization: 9.74 SS G_CDS: 5.29 Total: 15.03 kcal Atomic # 7 Polarization: -104.18 SS G_CDS: -5.83 Total: -110.01 kcal Atomic # 8 Polarization: -34.17 SS G_CDS: -0.05 Total: -34.22 kcal Atomic # 14 Polarization: 48.23 SS G_CDS: 1.82 Total: 50.05 kcal Total: -78.18 2.27 -75.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219489075.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.002 kcal (2) G-P(sol) polarization free energy of solvation -78.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds