Wall clock time and date at job start Mon Mar 30 2020 03:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46791 * 2 1 4 4 C 1.53001 * 109.47361 * 119.99889 * 2 1 3 5 5 N 1.46905 * 109.46922 * 61.39259 * 4 2 1 6 6 C 1.47193 * 110.99611 * 53.53887 * 5 4 2 7 7 C 1.52999 * 108.71257 * 192.37451 * 6 5 4 8 8 N 1.46000 * 110.04233 * 309.69632 * 7 6 5 9 9 C 1.33723 * 122.92930 * 18.15873 * 8 7 6 10 10 O 1.21277 * 118.62518 * 178.31017 * 9 8 7 11 11 C 1.46902 * 110.99619 * 176.42770 * 5 4 2 12 12 H 1.08995 * 109.39025 * 306.49319 * 11 5 4 13 13 C 1.50702 * 109.38657 * 66.28945 * 11 5 4 14 14 H 1.08004 * 119.99619 * 359.97438 * 13 11 5 15 15 C 1.37875 * 119.99819 * 179.97438 * 13 11 5 16 16 N 1.31507 * 120.00404 * 359.97438 * 15 13 11 17 17 Si 1.86800 * 119.99830 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.47041 * 90.00034 * 17 15 13 19 19 H 1.48503 * 109.47307 * 210.00136 * 17 15 13 20 20 H 1.48508 * 109.46997 * 329.99989 * 17 15 13 21 21 H 1.08997 * 109.47091 * 60.00183 * 1 2 3 22 22 H 1.08998 * 109.47026 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47048 * 299.99718 * 1 2 3 24 24 H 1.09003 * 109.47048 * 240.00282 * 2 1 3 25 25 H 1.09007 * 109.46685 * 180.02562 * 3 2 1 26 26 H 1.08997 * 109.47153 * 299.99779 * 3 2 1 27 27 H 1.08991 * 109.47519 * 60.00157 * 3 2 1 28 28 H 1.08997 * 109.47170 * 181.39420 * 4 2 1 29 29 H 1.08996 * 109.46907 * 301.39977 * 4 2 1 30 30 H 1.08996 * 109.59410 * 312.13445 * 6 5 4 31 31 H 1.09003 * 109.59465 * 72.59240 * 6 5 4 32 32 H 1.09000 * 109.37132 * 189.51869 * 7 6 5 33 33 H 1.08996 * 109.27932 * 69.81535 * 7 6 5 34 34 H 0.97006 * 118.53639 * 198.14023 * 8 7 6 35 35 H 0.96997 * 120.00566 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 1.5781 -2.1156 1.2325 6 6 1.9475 -2.7785 -0.0287 7 6 1.1887 -4.1034 -0.1274 8 7 1.3557 -4.8687 1.1047 9 6 1.7616 -4.3174 2.2534 10 8 1.8439 -5.0206 3.2381 11 6 2.1195 -2.8632 2.3753 12 1 3.2041 -2.7580 2.3955 13 6 1.5397 -2.3130 3.6529 14 1 0.8402 -1.4908 3.6184 15 6 1.9022 -2.8593 4.8658 16 7 2.7535 -3.8608 4.9079 17 14 1.1842 -2.1769 6.4495 18 1 -0.0687 -2.9031 6.7782 19 1 2.1624 -2.3529 7.5529 20 1 0.8879 -0.7320 6.2764 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 3.1300 1.4425 -0.0005 26 1 1.6766 1.9563 -0.8900 27 1 1.6767 1.9563 0.8899 28 1 3.1298 -0.6996 1.2618 29 1 1.6564 -0.2221 2.1390 30 1 1.6784 -2.1397 -0.8698 31 1 3.0205 -2.9697 -0.0406 32 1 1.5764 -4.6805 -0.9669 33 1 0.1296 -3.9006 -0.2865 34 1 1.1633 -5.8193 1.0895 35 1 3.0083 -4.2453 5.7611 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219489723.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:08 Heat of formation + Delta-G solvation = -14.911551 kcal Electronic energy + Delta-G solvation = -16766.452341 eV Core-core repulsion = 14186.122088 eV Total energy + Delta-G solvation = -2580.330253 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.13133 -36.85731 -34.57101 -33.44151 -31.71380 -28.90141 -26.94472 -26.74921 -24.78125 -22.39615 -22.05534 -19.22494 -18.18850 -16.58380 -16.11932 -15.39246 -14.87231 -14.30201 -14.24580 -13.80514 -13.50475 -13.28197 -12.61802 -12.28356 -12.13883 -11.93566 -11.84043 -11.30410 -11.13449 -10.87722 -10.68234 -10.64295 -10.57580 -10.37582 -9.99306 -9.75718 -9.25020 -8.38360 -7.97063 -7.88038 -7.35959 -5.79901 -3.88905 3.39720 3.45919 3.47526 4.28430 4.42544 4.57767 4.76374 5.20749 5.30749 5.45732 5.49020 5.51805 5.69154 5.84750 5.89301 5.91550 6.03917 6.14841 6.20692 6.28235 6.39313 6.41601 6.52377 6.56282 6.79172 6.87102 7.13920 7.52245 7.88836 8.04986 8.08674 8.41143 8.67782 9.06200 9.70282 9.93479 11.20139 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.022938 B = 0.011583 C = 0.008416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.386780 B = 2416.846672 C = 3326.144898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.101 4.101 3 C -0.144 4.144 4 C 0.071 3.929 5 N -0.523 5.523 6 C 0.027 3.973 7 C 0.128 3.872 8 N -0.752 5.752 9 C 0.507 3.493 10 O -0.488 6.488 11 C 0.216 3.784 12 H 0.024 0.976 13 C -0.532 4.532 14 H 0.067 0.933 15 C 0.072 3.928 16 N -0.822 5.822 17 Si 0.895 3.105 18 H -0.282 1.282 19 H -0.288 1.288 20 H -0.274 1.274 21 H 0.038 0.962 22 H 0.067 0.933 23 H 0.051 0.949 24 H 0.065 0.935 25 H 0.050 0.950 26 H 0.049 0.951 27 H 0.055 0.945 28 H 0.022 0.978 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.029 0.971 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.375 0.625 35 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.654 5.273 -11.552 12.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.119 4.119 3 C -0.202 4.202 4 C -0.057 4.057 5 N -0.249 5.249 6 C -0.102 4.102 7 C 0.002 3.998 8 N -0.410 5.410 9 C 0.294 3.706 10 O -0.357 6.357 11 C 0.106 3.894 12 H 0.042 0.958 13 C -0.571 4.571 14 H 0.085 0.915 15 C -0.137 4.137 16 N -0.455 5.455 17 Si 0.722 3.278 18 H -0.208 1.208 19 H -0.214 1.214 20 H -0.199 1.199 21 H 0.057 0.943 22 H 0.086 0.914 23 H 0.070 0.930 24 H 0.083 0.917 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.041 0.959 29 H 0.103 0.897 30 H 0.101 0.899 31 H 0.047 0.953 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.209 0.791 35 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -1.933 4.984 -10.766 12.020 hybrid contribution 0.405 -0.172 0.634 0.772 sum -1.528 4.812 -10.132 11.320 Atomic orbital electron populations 1.21691 0.94753 1.02573 1.00210 1.21296 0.96770 0.95394 0.98481 1.21798 1.00616 0.96431 1.01379 1.22041 0.96578 0.89298 0.97808 1.62583 1.59197 1.01703 1.01383 1.22520 0.97244 0.95213 0.95244 1.21141 0.99559 0.92128 0.86940 1.46294 1.72812 1.11230 1.10678 1.21818 0.75939 0.91632 0.81221 1.90779 1.49453 1.61404 1.34065 1.19325 0.94722 0.85915 0.89407 0.95843 1.20552 1.29334 1.19079 0.88090 0.91488 1.24971 0.95251 0.94386 0.99050 1.70243 1.30073 1.20457 1.24740 0.86573 0.78883 0.79162 0.83140 1.20790 1.21416 1.19913 0.94321 0.91432 0.92951 0.91707 0.93107 0.93194 0.92596 0.95929 0.89682 0.89854 0.95285 0.92529 0.92765 0.79117 0.93434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.87 9.05 37.16 0.34 -1.54 16 2 C -0.10 -1.42 2.48 -90.62 -0.22 -1.64 16 3 C -0.14 -1.76 9.19 37.16 0.34 -1.41 16 4 C 0.07 1.29 4.25 -3.82 -0.02 1.27 16 5 N -0.52 -10.68 3.85 -229.45 -0.88 -11.56 16 6 C 0.03 0.45 5.33 -3.66 -0.02 0.43 16 7 C 0.13 2.05 7.39 -4.31 -0.03 2.02 16 8 N -0.75 -15.36 5.52 -61.06 -0.34 -15.70 16 9 C 0.51 13.21 7.36 -11.67 -0.09 13.12 16 10 O -0.49 -14.80 13.73 5.56 0.08 -14.73 16 11 C 0.22 5.53 1.95 -70.23 -0.14 5.40 16 12 H 0.02 0.68 8.08 -51.93 -0.42 0.26 16 13 C -0.53 -15.00 7.98 -34.44 -0.27 -15.28 16 14 H 0.07 1.87 7.11 -52.48 -0.37 1.49 16 15 C 0.07 2.11 4.97 -17.82 -0.09 2.02 16 16 N -0.82 -25.23 10.23 55.43 0.57 -24.66 16 17 Si 0.89 22.28 29.54 -169.99 -5.02 17.26 16 18 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 19 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 20 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 21 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 22 H 0.07 1.03 7.64 -51.93 -0.40 0.63 16 23 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.06 0.85 5.99 -51.93 -0.31 0.54 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.02 0.42 8.10 -51.93 -0.42 0.00 16 29 H 0.08 1.71 6.97 -51.93 -0.36 1.35 16 30 H 0.08 1.15 5.53 -51.93 -0.29 0.87 16 31 H 0.03 0.51 8.08 -51.93 -0.42 0.09 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.38 7.01 8.84 -40.82 -0.36 6.65 16 35 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 275.75 15.07 4.16 4.16 Total: -1.00 -32.61 275.75 -7.09 -39.70 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -5.44 Total: 1.14 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: -0.20 Total: 4.39 kcal Atomic # 7 Polarization: -51.27 SS G_CDS: -0.65 Total: -51.92 kcal Atomic # 8 Polarization: -14.80 SS G_CDS: 0.08 Total: -14.73 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -32.61 -7.09 -39.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219489723.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.789 kcal (2) G-P(sol) polarization free energy of solvation -32.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds