Wall clock time and date at job start Mon Mar 30 2020 03:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46791 * 2 1 4 4 C 1.53001 * 109.47361 * 119.99889 * 2 1 3 5 5 N 1.46905 * 109.46922 * 61.39259 * 4 2 1 6 6 C 1.47193 * 110.99611 * 53.53887 * 5 4 2 7 7 C 1.52999 * 108.71257 * 192.37451 * 6 5 4 8 8 N 1.46000 * 110.04233 * 309.69632 * 7 6 5 9 9 C 1.33723 * 122.92930 * 18.15873 * 8 7 6 10 10 O 1.21277 * 118.62518 * 178.31017 * 9 8 7 11 11 C 1.46902 * 110.99619 * 176.42770 * 5 4 2 12 12 H 1.08995 * 109.39025 * 306.49319 * 11 5 4 13 13 C 1.50702 * 109.38657 * 66.28945 * 11 5 4 14 14 H 1.08004 * 119.99619 * 359.97438 * 13 11 5 15 15 C 1.37875 * 119.99819 * 179.97438 * 13 11 5 16 16 N 1.31507 * 120.00404 * 359.97438 * 15 13 11 17 17 Si 1.86800 * 119.99830 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.47041 * 90.00034 * 17 15 13 19 19 H 1.48503 * 109.47307 * 210.00136 * 17 15 13 20 20 H 1.48508 * 109.46997 * 329.99989 * 17 15 13 21 21 H 1.08997 * 109.47091 * 60.00183 * 1 2 3 22 22 H 1.08998 * 109.47026 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47048 * 299.99718 * 1 2 3 24 24 H 1.09003 * 109.47048 * 240.00282 * 2 1 3 25 25 H 1.09007 * 109.46685 * 180.02562 * 3 2 1 26 26 H 1.08997 * 109.47153 * 299.99779 * 3 2 1 27 27 H 1.08991 * 109.47519 * 60.00157 * 3 2 1 28 28 H 1.08997 * 109.47170 * 181.39420 * 4 2 1 29 29 H 1.08996 * 109.46907 * 301.39977 * 4 2 1 30 30 H 1.08996 * 109.59410 * 312.13445 * 6 5 4 31 31 H 1.09003 * 109.59465 * 72.59240 * 6 5 4 32 32 H 1.09000 * 109.37132 * 189.51869 * 7 6 5 33 33 H 1.08996 * 109.27932 * 69.81535 * 7 6 5 34 34 H 0.97006 * 118.53639 * 198.14023 * 8 7 6 35 35 H 0.96997 * 120.00566 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 1.5781 -2.1156 1.2325 6 6 1.9475 -2.7785 -0.0287 7 6 1.1887 -4.1034 -0.1274 8 7 1.3557 -4.8687 1.1047 9 6 1.7616 -4.3174 2.2534 10 8 1.8439 -5.0206 3.2381 11 6 2.1195 -2.8632 2.3753 12 1 3.2041 -2.7580 2.3955 13 6 1.5397 -2.3130 3.6529 14 1 0.8402 -1.4908 3.6184 15 6 1.9022 -2.8593 4.8658 16 7 2.7535 -3.8608 4.9079 17 14 1.1842 -2.1769 6.4495 18 1 -0.0687 -2.9031 6.7782 19 1 2.1624 -2.3529 7.5529 20 1 0.8879 -0.7320 6.2764 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 3.1300 1.4425 -0.0005 26 1 1.6766 1.9563 -0.8900 27 1 1.6767 1.9563 0.8899 28 1 3.1298 -0.6996 1.2618 29 1 1.6564 -0.2221 2.1390 30 1 1.6784 -2.1397 -0.8698 31 1 3.0205 -2.9697 -0.0406 32 1 1.5764 -4.6805 -0.9669 33 1 0.1296 -3.9006 -0.2865 34 1 1.1633 -5.8193 1.0895 35 1 3.0083 -4.2453 5.7611 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219489723.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:08 Heat of formation + Delta-G solvation = -39.649909 kcal Electronic energy + Delta-G solvation = -16767.525076 eV Core-core repulsion = 14186.122088 eV Total energy + Delta-G solvation = -2581.402988 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.88819 -38.50131 -36.16802 -35.23601 -33.60515 -30.65167 -28.58951 -27.81557 -26.60068 -24.09797 -23.65355 -20.55042 -19.92357 -18.59742 -17.88107 -17.11405 -16.32951 -16.18040 -15.82637 -15.41597 -15.29075 -14.58409 -14.15823 -14.13372 -13.80004 -13.22116 -12.98597 -12.87797 -12.77405 -12.69721 -12.42448 -12.21527 -11.94384 -11.72072 -11.65788 -11.43476 -10.96461 -10.54337 -10.02338 -9.62060 -9.04519 -7.99136 -6.13832 1.38711 1.41870 1.51231 2.26624 2.51034 2.78448 3.19097 3.32118 4.00354 4.11496 4.18413 4.27003 4.40727 4.51146 4.60927 4.78853 4.81684 4.91535 4.96503 5.03502 5.10674 5.16812 5.20272 5.26433 5.35705 5.58183 5.66260 5.69228 5.88044 6.22349 6.36766 6.60514 6.70947 6.97572 7.49281 7.98600 9.00360 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.022938 B = 0.011583 C = 0.008416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.386780 B = 2416.846672 C = 3326.144898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.091 4.091 3 C -0.142 4.142 4 C 0.071 3.929 5 N -0.525 5.525 6 C 0.023 3.977 7 C 0.121 3.879 8 N -0.741 5.741 9 C 0.500 3.500 10 O -0.543 6.543 11 C 0.218 3.782 12 H -0.015 1.015 13 C -0.543 4.543 14 H 0.063 0.937 15 C 0.018 3.982 16 N -0.857 5.857 17 Si 0.958 3.042 18 H -0.284 1.284 19 H -0.283 1.283 20 H -0.259 1.259 21 H 0.067 0.933 22 H 0.053 0.947 23 H 0.038 0.962 24 H 0.084 0.916 25 H 0.052 0.948 26 H 0.075 0.925 27 H 0.048 0.952 28 H 0.010 0.990 29 H 0.057 0.943 30 H 0.123 0.877 31 H 0.021 0.979 32 H 0.104 0.896 33 H 0.072 0.928 34 H 0.387 0.613 35 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.739 6.360 -13.925 15.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.109 4.109 3 C -0.199 4.199 4 C -0.057 4.057 5 N -0.251 5.251 6 C -0.105 4.105 7 C -0.002 4.002 8 N -0.397 5.397 9 C 0.287 3.713 10 O -0.416 6.416 11 C 0.107 3.893 12 H 0.003 0.997 13 C -0.581 4.581 14 H 0.081 0.919 15 C -0.188 4.188 16 N -0.491 5.491 17 Si 0.783 3.217 18 H -0.211 1.211 19 H -0.209 1.209 20 H -0.183 1.183 21 H 0.086 0.914 22 H 0.072 0.928 23 H 0.057 0.943 24 H 0.102 0.898 25 H 0.071 0.929 26 H 0.094 0.906 27 H 0.067 0.933 28 H 0.029 0.971 29 H 0.075 0.925 30 H 0.141 0.859 31 H 0.040 0.960 32 H 0.122 0.878 33 H 0.090 0.910 34 H 0.222 0.778 35 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -3.038 6.096 -13.216 14.868 hybrid contribution 0.738 -0.489 1.231 1.516 sum -2.299 5.607 -11.985 13.430 Atomic orbital electron populations 1.21657 0.94286 1.01923 1.01001 1.21251 0.96993 0.96218 0.96462 1.21778 1.00780 0.95079 1.02296 1.22071 0.95848 0.88491 0.99251 1.62514 1.58794 1.02363 1.01387 1.22744 0.97086 0.96229 0.94457 1.21554 1.00904 0.91823 0.85959 1.46014 1.70800 1.12171 1.10679 1.21702 0.75956 0.91554 0.82084 1.90741 1.51996 1.62390 1.36502 1.19028 0.92388 0.86904 0.90950 0.99748 1.20860 1.28840 1.18838 0.89585 0.91871 1.25823 0.95714 0.94671 1.02545 1.70433 1.31720 1.21984 1.24960 0.85580 0.77842 0.79102 0.79160 1.21055 1.20855 1.18330 0.91390 0.92770 0.94328 0.89816 0.92931 0.90633 0.93325 0.97128 0.92478 0.85894 0.96021 0.87835 0.91014 0.77825 0.94036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.26 9.05 71.98 0.65 -2.61 16 2 C -0.09 -2.31 2.48 -10.79 -0.03 -2.34 16 3 C -0.14 -3.05 9.19 71.98 0.66 -2.39 16 4 C 0.07 2.59 4.25 86.30 0.37 2.95 16 5 N -0.52 -21.19 3.85 -879.84 -3.39 -24.58 16 6 C 0.02 0.70 5.33 86.25 0.46 1.16 16 7 C 0.12 3.46 7.39 86.47 0.64 4.10 16 8 N -0.74 -29.31 5.52 -466.08 -2.57 -31.88 16 9 C 0.50 26.54 7.36 87.68 0.64 27.19 16 10 O -0.54 -34.06 13.73 -3.02 -0.04 -34.11 16 11 C 0.22 11.51 1.95 43.28 0.08 11.59 16 12 H -0.01 -0.86 8.08 -2.39 -0.02 -0.88 16 13 C -0.54 -31.57 7.98 25.60 0.20 -31.36 16 14 H 0.06 3.61 7.11 -2.91 -0.02 3.59 16 15 C 0.02 1.07 4.97 84.66 0.42 1.49 16 16 N -0.86 -54.75 10.23 21.45 0.22 -54.53 16 17 Si 0.96 46.90 29.54 68.60 2.03 48.93 16 18 H -0.28 -13.95 7.11 99.48 0.71 -13.24 16 19 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 20 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 21 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 22 H 0.05 1.49 7.64 -2.39 -0.02 1.47 16 23 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 24 H 0.08 1.84 5.99 -2.39 -0.01 1.83 16 25 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 26 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.05 1.11 8.14 -2.39 -0.02 1.10 16 28 H 0.01 0.40 8.10 -2.39 -0.02 0.38 16 29 H 0.06 2.36 6.97 -2.39 -0.02 2.34 16 30 H 0.12 2.84 5.53 -2.39 -0.01 2.83 16 31 H 0.02 0.71 8.08 -2.39 -0.02 0.69 16 32 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.39 13.91 8.84 -92.70 -0.82 13.09 16 35 H 0.25 15.42 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -74.51 275.75 0.60 -73.91 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: 0.25 Total: 12.48 kcal Atomic # 6 Polarization: 5.68 SS G_CDS: 4.11 Total: 9.78 kcal Atomic # 7 Polarization: -105.25 SS G_CDS: -5.74 Total: -110.99 kcal Atomic # 8 Polarization: -34.06 SS G_CDS: -0.04 Total: -34.11 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 2.03 Total: 48.93 kcal Total: -74.51 0.60 -73.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219489723.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.256 kcal (2) G-P(sol) polarization free energy of solvation -74.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds