Wall clock time and date at job start Mon Mar 30 2020 03:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.47246 * 120.07758 * 2 1 4 4 C 1.53110 * 108.40407 * 249.72307 * 3 2 1 5 5 C 1.53009 * 109.22016 * 34.74125 * 4 3 2 6 6 C 1.52993 * 109.22065 * 154.12837 * 4 3 2 7 7 C 1.51684 * 110.75611 * 274.41483 * 4 3 2 8 8 N 1.45757 * 113.93791 * 66.76238 * 7 4 3 9 9 C 1.46875 * 112.44156 * 292.28746 * 8 7 4 10 10 H 1.08995 * 109.60055 * 326.01784 * 9 8 7 11 11 C 1.50694 * 109.59930 * 205.70371 * 9 8 7 12 12 H 1.08001 * 120.00440 * 359.97438 * 11 9 8 13 13 C 1.37886 * 120.00004 * 180.02562 * 11 9 8 14 14 N 1.31511 * 119.99766 * 359.97438 * 13 11 9 15 15 Si 1.86799 * 120.00007 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47128 * 59.99729 * 15 13 11 17 17 H 1.48500 * 109.47096 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.47053 * 299.99695 * 15 13 11 19 19 C 1.33617 * 120.07101 * 179.72700 * 2 1 3 20 20 O 1.21281 * 119.88211 * 0.78649 * 19 2 1 21 21 H 1.09000 * 109.47382 * 89.99805 * 1 2 3 22 22 H 1.08998 * 109.47214 * 210.00084 * 1 2 3 23 23 H 1.09007 * 109.46682 * 329.99504 * 1 2 3 24 24 H 1.09005 * 109.67360 * 9.45125 * 3 2 1 25 25 H 1.08999 * 109.67550 * 129.99380 * 3 2 1 26 26 H 1.09000 * 109.47081 * 60.00161 * 5 4 3 27 27 H 1.08992 * 109.47027 * 179.97438 * 5 4 3 28 28 H 1.09001 * 109.46999 * 299.99979 * 5 4 3 29 29 H 1.08997 * 109.47797 * 59.99874 * 6 4 3 30 30 H 1.09001 * 109.47245 * 180.02562 * 6 4 3 31 31 H 1.09004 * 109.47202 * 299.99951 * 6 4 3 32 32 H 1.08994 * 108.59081 * 187.92080 * 7 4 3 33 33 H 1.09005 * 108.58474 * 305.75973 * 7 4 3 34 34 H 1.00903 * 110.99520 * 57.30188 * 8 7 4 35 35 H 0.97001 * 119.99939 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2030 1.2742 0.0000 4 6 2.8809 1.4402 -1.3628 5 6 1.9835 0.8419 -2.4480 6 6 3.0873 2.9297 -1.6446 7 6 4.2253 0.7380 -1.3835 8 7 4.1358 -0.7137 -1.2880 9 6 3.6484 -1.1604 0.0235 10 1 4.0068 -0.4817 0.7973 11 6 4.1502 -2.5539 0.3014 12 1 4.7700 -3.0595 -0.4243 13 6 3.8171 -3.1840 1.4818 14 7 3.0619 -2.5686 2.3653 15 14 4.4385 -4.9116 1.8260 16 1 5.9235 -4.9129 1.8253 17 1 3.9443 -5.3603 3.1525 18 1 3.9423 -5.8349 0.7742 19 6 2.1345 -1.1563 0.0055 20 8 1.5274 -2.2062 -0.0039 21 1 -0.3634 0.0000 -1.0276 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3633 0.8900 0.5140 24 1 1.5108 2.0992 0.1685 25 1 2.9577 1.2612 0.7863 26 1 1.0239 1.3589 -2.4517 27 1 2.4622 0.9583 -3.4203 28 1 1.8248 -0.2173 -2.2452 29 1 3.7174 3.3627 -0.8677 30 1 3.5695 3.0526 -2.6144 31 1 2.1216 3.4352 -1.6527 32 1 4.7370 0.9944 -2.3110 33 1 4.8209 1.1031 -0.5467 34 1 3.5682 -1.0906 -2.0323 35 1 2.8279 -3.0117 3.1958 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219495260.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:31 Heat of formation + Delta-G solvation = -26.489020 kcal Electronic energy + Delta-G solvation = -17203.431632 eV Core-core repulsion = 14622.599342 eV Total energy + Delta-G solvation = -2580.832289 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.86752 -36.76072 -34.54762 -32.88588 -31.96113 -28.03939 -27.13181 -26.83933 -25.18123 -24.01937 -22.12358 -19.05766 -17.97723 -16.49561 -16.26166 -15.29936 -15.14457 -14.61066 -14.36707 -13.59253 -13.26072 -13.07620 -12.52591 -12.38912 -12.10160 -11.89959 -11.67810 -11.56441 -11.30670 -11.13218 -10.89017 -10.77129 -10.64176 -10.50282 -10.33286 -9.81611 -9.32182 -8.66362 -8.31943 -7.73830 -7.30952 -5.96690 -3.97249 3.42036 3.45783 3.49676 3.93072 4.12792 4.52506 4.97216 5.00642 5.12405 5.40254 5.53245 5.60732 5.69301 5.71709 5.77872 5.85440 5.96328 5.98479 6.09032 6.18816 6.21800 6.32634 6.40432 6.44057 6.54911 6.62675 6.95868 7.39822 7.82717 8.05608 8.23558 8.30963 8.63797 9.06136 9.66323 9.73539 11.14494 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.037960 B = 0.010166 C = 0.008978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.434317 B = 2753.690954 C = 3117.975390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.631 5.631 3 C 0.129 3.871 4 C -0.124 4.124 5 C -0.134 4.134 6 C -0.132 4.132 7 C 0.068 3.932 8 N -0.670 5.670 9 C 0.215 3.785 10 H 0.053 0.947 11 C -0.496 4.496 12 H 0.068 0.932 13 C 0.073 3.927 14 N -0.884 5.884 15 Si 0.904 3.096 16 H -0.277 1.277 17 H -0.290 1.290 18 H -0.276 1.276 19 C 0.498 3.502 20 O -0.522 6.522 21 H 0.037 0.963 22 H 0.069 0.931 23 H 0.051 0.949 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.048 0.952 27 H 0.049 0.951 28 H 0.060 0.940 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.051 0.949 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.332 0.668 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.890 11.029 -5.973 12.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.368 5.368 3 C 0.005 3.995 4 C -0.127 4.127 5 C -0.191 4.191 6 C -0.190 4.190 7 C -0.063 4.063 8 N -0.299 5.299 9 C 0.104 3.896 10 H 0.070 0.930 11 C -0.534 4.534 12 H 0.086 0.914 13 C -0.130 4.130 14 N -0.521 5.521 15 Si 0.732 3.268 16 H -0.203 1.203 17 H -0.215 1.215 18 H -0.202 1.202 19 C 0.285 3.715 20 O -0.393 6.393 21 H 0.055 0.945 22 H 0.088 0.912 23 H 0.070 0.930 24 H 0.089 0.911 25 H 0.089 0.911 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.150 0.850 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.647 10.287 -5.593 11.825 hybrid contribution -0.950 -0.457 0.322 1.102 sum -2.597 9.830 -5.271 11.452 Atomic orbital electron populations 1.21425 0.82082 1.01813 0.99980 1.48186 1.05365 1.06726 1.76564 1.21683 0.95864 0.85977 0.95996 1.21592 0.98570 0.96355 0.96205 1.21807 0.98619 1.01593 0.97120 1.21762 1.01256 0.94524 1.01467 1.21682 0.93788 0.89017 1.01794 1.60290 1.57210 1.06388 1.06000 1.19570 0.84742 0.98516 0.86772 0.92988 1.20666 1.31093 0.98645 1.03042 0.91403 1.24893 0.94203 0.98039 0.95903 1.69873 1.35699 1.37847 1.08707 0.86473 0.78670 0.84487 0.77170 1.20281 1.21538 1.20193 1.22891 0.93321 0.81716 0.73531 1.90493 1.70263 1.31507 1.47028 0.94454 0.91249 0.92982 0.91104 0.91095 0.93266 0.93226 0.92140 0.92541 0.92601 0.93023 0.91906 0.91576 0.85013 0.92959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.60 10.22 59.85 0.61 2.21 16 2 N -0.63 -12.74 1.74 -180.93 -0.31 -13.05 16 3 C 0.13 2.10 5.14 -3.58 -0.02 2.09 16 4 C -0.12 -1.78 0.74 -155.12 -0.11 -1.90 16 5 C -0.13 -1.96 7.07 37.16 0.26 -1.70 16 6 C -0.13 -1.45 8.25 37.15 0.31 -1.14 16 7 C 0.07 1.12 4.74 -5.11 -0.02 1.10 16 8 N -0.67 -14.04 6.25 -110.43 -0.69 -14.73 16 9 C 0.21 5.43 2.10 -69.69 -0.15 5.28 16 10 H 0.05 1.39 6.66 -51.93 -0.35 1.04 16 11 C -0.50 -14.25 8.37 -34.44 -0.29 -14.54 16 12 H 0.07 1.95 7.81 -52.49 -0.41 1.54 16 13 C 0.07 2.14 4.84 -17.82 -0.09 2.06 16 14 N -0.88 -26.63 12.09 55.43 0.67 -25.96 16 15 Si 0.90 22.75 29.54 -169.99 -5.02 17.72 16 16 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 17 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 18 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 19 C 0.50 12.52 4.75 -11.16 -0.05 12.47 16 20 O -0.52 -15.31 14.74 5.56 0.08 -15.23 16 21 H 0.04 0.60 8.03 -51.93 -0.42 0.18 16 22 H 0.07 1.40 7.41 -51.93 -0.38 1.02 16 23 H 0.05 0.75 7.88 -51.93 -0.41 0.34 16 24 H 0.07 0.96 7.53 -51.93 -0.39 0.57 16 25 H 0.07 1.26 6.76 -51.93 -0.35 0.90 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 1.08 5.02 -51.93 -0.26 0.82 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.05 0.52 8.11 -51.93 -0.42 0.10 16 32 H 0.06 0.92 8.10 -51.93 -0.42 0.49 16 33 H 0.07 1.10 7.77 -51.93 -0.40 0.70 16 34 H 0.33 6.92 6.86 -39.29 -0.27 6.65 16 35 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 270.72 15.07 4.08 4.08 Total: -1.00 -32.55 270.72 -6.05 -38.60 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -5.31 Total: 2.65 kcal Atomic # 6 Polarization: 5.48 SS G_CDS: 0.45 Total: 5.93 kcal Atomic # 7 Polarization: -53.41 SS G_CDS: -0.33 Total: -53.74 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: 0.08 Total: -15.23 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.02 Total: 17.72 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -32.55 -6.05 -38.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219495260.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.110 kcal (2) G-P(sol) polarization free energy of solvation -32.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds