Wall clock time and date at job start Mon Mar 30 2020 03:09:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46503 * 1
3 3 C 1.47246 * 120.07758 * 2 1
4 4 C 1.53110 * 108.40407 * 249.72307 * 3 2 1
5 5 C 1.53009 * 109.22016 * 34.74125 * 4 3 2
6 6 C 1.52993 * 109.22065 * 154.12837 * 4 3 2
7 7 C 1.51684 * 110.75611 * 274.41483 * 4 3 2
8 8 N 1.45757 * 113.93791 * 66.76238 * 7 4 3
9 9 C 1.46875 * 112.44156 * 292.28746 * 8 7 4
10 10 H 1.08995 * 109.60055 * 326.01784 * 9 8 7
11 11 C 1.50694 * 109.59930 * 205.70371 * 9 8 7
12 12 H 1.08001 * 120.00440 * 359.97438 * 11 9 8
13 13 C 1.37886 * 120.00004 * 180.02562 * 11 9 8
14 14 N 1.31511 * 119.99766 * 359.97438 * 13 11 9
15 15 Si 1.86799 * 120.00007 * 179.97438 * 13 11 9
16 16 H 1.48500 * 109.47128 * 59.99729 * 15 13 11
17 17 H 1.48500 * 109.47096 * 179.97438 * 15 13 11
18 18 H 1.48495 * 109.47053 * 299.99695 * 15 13 11
19 19 C 1.33617 * 120.07101 * 179.72700 * 2 1 3
20 20 O 1.21281 * 119.88211 * 0.78649 * 19 2 1
21 21 H 1.09000 * 109.47382 * 89.99805 * 1 2 3
22 22 H 1.08998 * 109.47214 * 210.00084 * 1 2 3
23 23 H 1.09007 * 109.46682 * 329.99504 * 1 2 3
24 24 H 1.09005 * 109.67360 * 9.45125 * 3 2 1
25 25 H 1.08999 * 109.67550 * 129.99380 * 3 2 1
26 26 H 1.09000 * 109.47081 * 60.00161 * 5 4 3
27 27 H 1.08992 * 109.47027 * 179.97438 * 5 4 3
28 28 H 1.09001 * 109.46999 * 299.99979 * 5 4 3
29 29 H 1.08997 * 109.47797 * 59.99874 * 6 4 3
30 30 H 1.09001 * 109.47245 * 180.02562 * 6 4 3
31 31 H 1.09004 * 109.47202 * 299.99951 * 6 4 3
32 32 H 1.08994 * 108.59081 * 187.92080 * 7 4 3
33 33 H 1.09005 * 108.58474 * 305.75973 * 7 4 3
34 34 H 1.00903 * 110.99520 * 57.30188 * 8 7 4
35 35 H 0.97001 * 119.99939 * 180.02562 * 14 13 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.2030 1.2742 0.0000
4 6 2.8809 1.4402 -1.3628
5 6 1.9835 0.8419 -2.4480
6 6 3.0873 2.9297 -1.6446
7 6 4.2253 0.7380 -1.3835
8 7 4.1358 -0.7137 -1.2880
9 6 3.6484 -1.1604 0.0235
10 1 4.0068 -0.4817 0.7973
11 6 4.1502 -2.5539 0.3014
12 1 4.7700 -3.0595 -0.4243
13 6 3.8171 -3.1840 1.4818
14 7 3.0619 -2.5686 2.3653
15 14 4.4385 -4.9116 1.8260
16 1 5.9235 -4.9129 1.8253
17 1 3.9443 -5.3603 3.1525
18 1 3.9423 -5.8349 0.7742
19 6 2.1345 -1.1563 0.0055
20 8 1.5274 -2.2062 -0.0039
21 1 -0.3634 0.0000 -1.0276
22 1 -0.3633 -0.8900 0.5138
23 1 -0.3633 0.8900 0.5140
24 1 1.5108 2.0992 0.1685
25 1 2.9577 1.2612 0.7863
26 1 1.0239 1.3589 -2.4517
27 1 2.4622 0.9583 -3.4203
28 1 1.8248 -0.2173 -2.2452
29 1 3.7174 3.3627 -0.8677
30 1 3.5695 3.0526 -2.6144
31 1 2.1216 3.4352 -1.6527
32 1 4.7370 0.9944 -2.3110
33 1 4.8209 1.1031 -0.5467
34 1 3.5682 -1.0906 -2.0323
35 1 2.8279 -3.0117 3.1958
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000219495260.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:09:30
Heat of formation + Delta-G solvation = -50.264882 kcal
Electronic energy + Delta-G solvation = -17204.462630 eV
Core-core repulsion = 14622.599342 eV
Total energy + Delta-G solvation = -2581.863288 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 226.142 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-41.47223 -38.41794 -36.27479 -34.67413 -33.84933 -29.72252 -28.52310 -28.09787
-26.75584 -25.64767 -23.90131 -20.59688 -19.56879 -18.40013 -18.04779 -16.95995
-16.76689 -16.39263 -15.94108 -15.06126 -14.93358 -14.45965 -14.33954 -13.77005
-13.61222 -13.37072 -13.08807 -12.89098 -12.85082 -12.70435 -12.65569 -12.35346
-12.21658 -11.96968 -11.77534 -11.55705 -11.33099 -10.65307 -10.39844 -9.40319
-9.02120 -8.16183 -6.23037 1.38122 1.43639 1.49133 2.18167 2.37750
2.48348 3.22884 3.64985 3.81326 3.84315 4.05666 4.26839 4.45802
4.52494 4.56431 4.62322 4.70028 4.77715 4.85898 4.93089 4.97172
5.03495 5.12262 5.16410 5.27401 5.36596 5.48257 5.68296 5.87108
6.00717 6.43999 6.56921 6.75084 6.93825 7.46312 7.83157 8.93174
Molecular weight = 226.14amu
Principal moments of inertia in cm(-1)
A = 0.037960 B = 0.010166 C = 0.008978
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 737.434317 B = 2753.690954 C = 3117.975390
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.090 3.910
2 N -0.627 5.627
3 C 0.120 3.880
4 C -0.115 4.115
5 C -0.129 4.129
6 C -0.123 4.123
7 C 0.063 3.937
8 N -0.676 5.676
9 C 0.219 3.781
10 H 0.033 0.967
11 C -0.517 4.517
12 H 0.058 0.942
13 C 0.023 3.977
14 N -0.913 5.913
15 Si 0.961 3.039
16 H -0.261 1.261
17 H -0.285 1.285
18 H -0.281 1.281
19 C 0.499 3.501
20 O -0.578 6.578
21 H 0.056 0.944
22 H 0.035 0.965
23 H 0.092 0.908
24 H 0.109 0.891
25 H 0.052 0.948
26 H 0.065 0.935
27 H 0.066 0.934
28 H 0.021 0.979
29 H 0.063 0.937
30 H 0.069 0.931
31 H 0.069 0.931
32 H 0.089 0.911
33 H 0.061 0.939
34 H 0.331 0.669
35 H 0.258 0.742
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.947 13.183 -7.006 15.055
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.053 4.053
2 N -0.362 5.362
3 C -0.002 4.002
4 C -0.118 4.118
5 C -0.187 4.187
6 C -0.181 4.181
7 C -0.067 4.067
8 N -0.305 5.305
9 C 0.107 3.893
10 H 0.050 0.950
11 C -0.555 4.555
12 H 0.076 0.924
13 C -0.178 4.178
14 N -0.551 5.551
15 Si 0.787 3.213
16 H -0.185 1.185
17 H -0.210 1.210
18 H -0.206 1.206
19 C 0.286 3.714
20 O -0.454 6.454
21 H 0.074 0.926
22 H 0.054 0.946
23 H 0.110 0.890
24 H 0.128 0.872
25 H 0.071 0.929
26 H 0.084 0.916
27 H 0.085 0.915
28 H 0.040 0.960
29 H 0.082 0.918
30 H 0.088 0.912
31 H 0.088 0.912
32 H 0.107 0.893
33 H 0.080 0.920
34 H 0.149 0.851
35 H 0.067 0.933
Dipole moment (debyes) X Y Z Total
from point charges -1.688 12.519 -6.642 14.272
hybrid contribution -0.927 -1.021 0.583 1.497
sum -2.615 11.498 -6.060 13.258
Atomic orbital electron populations
1.21567 0.80278 1.02123 1.01300 1.48103 1.06699 1.06772 1.74592
1.22025 0.96261 0.85029 0.96903 1.21489 0.96698 0.98797 0.94853
1.21758 0.99739 0.99221 0.97944 1.21702 1.02699 0.91215 1.02530
1.21844 0.95595 0.86331 1.02908 1.60180 1.56818 1.09613 1.03914
1.19243 0.85270 0.96510 0.88229 0.94982 1.21047 1.31053 1.00458
1.02945 0.92363 1.25680 0.94488 1.01706 0.95913 1.69985 1.36996
1.39161 1.08935 0.85573 0.78997 0.79937 0.76820 1.18541 1.21012
1.20642 1.22625 0.93267 0.82375 0.73120 1.90452 1.71085 1.33781
1.50112 0.92573 0.94570 0.88957 0.87234 0.92927 0.91599 0.91458
0.95964 0.91766 0.91154 0.91208 0.89292 0.92050 0.85118 0.93330
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.09 3.05 10.22 127.77 1.31 4.36 16
2 N -0.63 -24.88 1.74 -845.37 -1.47 -26.35 16
3 C 0.12 3.65 5.14 86.27 0.44 4.10 16
4 C -0.12 -2.97 0.74 -52.58 -0.04 -3.01 16
5 C -0.13 -3.40 7.07 71.99 0.51 -2.89 16
6 C -0.12 -2.12 8.25 71.98 0.59 -1.53 16
7 C 0.06 1.96 4.74 86.09 0.41 2.37 16
8 N -0.68 -28.44 6.25 -503.29 -3.15 -31.59 16
9 C 0.22 11.37 2.10 43.65 0.09 11.46 16
10 H 0.03 1.78 6.66 -2.39 -0.02 1.77 16
11 C -0.52 -30.60 8.37 25.60 0.21 -30.39 16
12 H 0.06 3.45 7.81 -2.91 -0.02 3.42 16
13 C 0.02 1.35 4.84 84.66 0.41 1.76 16
14 N -0.91 -56.62 12.09 21.45 0.26 -56.36 16
15 Si 0.96 47.63 29.54 68.60 2.03 49.66 16
16 H -0.26 -12.11 7.11 99.48 0.71 -11.40 16
17 H -0.28 -13.74 7.11 99.48 0.71 -13.04 16
18 H -0.28 -13.98 7.11 99.48 0.71 -13.28 16
19 C 0.50 25.66 4.75 88.06 0.42 26.08 16
20 O -0.58 -35.26 14.74 -3.03 -0.04 -35.31 16
21 H 0.06 1.70 8.03 -2.39 -0.02 1.68 16
22 H 0.04 1.47 7.41 -2.39 -0.02 1.45 16
23 H 0.09 2.37 7.88 -2.38 -0.02 2.35 16
24 H 0.11 2.50 7.53 -2.38 -0.02 2.48 16
25 H 0.05 1.81 6.76 -2.39 -0.02 1.80 16
26 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16
27 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16
28 H 0.02 0.75 5.02 -2.39 -0.01 0.74 16
29 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16
30 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16
31 H 0.07 1.00 8.11 -2.38 -0.02 0.98 16
32 H 0.09 2.33 8.10 -2.39 -0.02 2.31 16
33 H 0.06 1.97 7.77 -2.38 -0.02 1.95 16
34 H 0.33 13.94 6.86 -89.69 -0.62 13.32 16
35 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16
Total: -1.00 -73.81 270.72 2.44 -71.37
By element:
Atomic # 1 Polarization: 15.81 SS G_CDS: 0.46 Total: 16.27 kcal
Atomic # 6 Polarization: 7.95 SS G_CDS: 4.36 Total: 12.30 kcal
Atomic # 7 Polarization: -109.94 SS G_CDS: -4.35 Total: -114.30 kcal
Atomic # 8 Polarization: -35.26 SS G_CDS: -0.04 Total: -35.31 kcal
Atomic # 14 Polarization: 47.63 SS G_CDS: 2.03 Total: 49.66 kcal
Total: -73.81 2.44 -71.37 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000219495260.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 21.107 kcal
(2) G-P(sol) polarization free energy of solvation -73.815 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.708 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.443 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.372 kcal
(6) G-S(sol) free energy of system = (1) + (5) -50.265 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds