Wall clock time and date at job start Mon Mar 30 2020 03:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.47246 * 120.07758 * 2 1 4 4 C 1.53110 * 108.40407 * 249.72307 * 3 2 1 5 5 C 1.53009 * 109.22016 * 34.74125 * 4 3 2 6 6 C 1.52993 * 109.22065 * 154.12837 * 4 3 2 7 7 C 1.51684 * 110.75611 * 274.41483 * 4 3 2 8 8 N 1.45757 * 113.93791 * 66.76238 * 7 4 3 9 9 C 1.46875 * 112.44156 * 292.28746 * 8 7 4 10 10 H 1.08995 * 109.60055 * 326.01784 * 9 8 7 11 11 C 1.50694 * 109.59930 * 205.70371 * 9 8 7 12 12 H 1.08001 * 120.00440 * 359.97438 * 11 9 8 13 13 C 1.37886 * 120.00004 * 180.02562 * 11 9 8 14 14 N 1.31511 * 119.99766 * 359.97438 * 13 11 9 15 15 Si 1.86799 * 120.00007 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47128 * 59.99729 * 15 13 11 17 17 H 1.48500 * 109.47096 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.47053 * 299.99695 * 15 13 11 19 19 C 1.33617 * 120.07101 * 179.72700 * 2 1 3 20 20 O 1.21281 * 119.88211 * 0.78649 * 19 2 1 21 21 H 1.09000 * 109.47382 * 89.99805 * 1 2 3 22 22 H 1.08998 * 109.47214 * 210.00084 * 1 2 3 23 23 H 1.09007 * 109.46682 * 329.99504 * 1 2 3 24 24 H 1.09005 * 109.67360 * 9.45125 * 3 2 1 25 25 H 1.08999 * 109.67550 * 129.99380 * 3 2 1 26 26 H 1.09000 * 109.47081 * 60.00161 * 5 4 3 27 27 H 1.08992 * 109.47027 * 179.97438 * 5 4 3 28 28 H 1.09001 * 109.46999 * 299.99979 * 5 4 3 29 29 H 1.08997 * 109.47797 * 59.99874 * 6 4 3 30 30 H 1.09001 * 109.47245 * 180.02562 * 6 4 3 31 31 H 1.09004 * 109.47202 * 299.99951 * 6 4 3 32 32 H 1.08994 * 108.59081 * 187.92080 * 7 4 3 33 33 H 1.09005 * 108.58474 * 305.75973 * 7 4 3 34 34 H 1.00903 * 110.99520 * 57.30188 * 8 7 4 35 35 H 0.97001 * 119.99939 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2030 1.2742 0.0000 4 6 2.8809 1.4402 -1.3628 5 6 1.9835 0.8419 -2.4480 6 6 3.0873 2.9297 -1.6446 7 6 4.2253 0.7380 -1.3835 8 7 4.1358 -0.7137 -1.2880 9 6 3.6484 -1.1604 0.0235 10 1 4.0068 -0.4817 0.7973 11 6 4.1502 -2.5539 0.3014 12 1 4.7700 -3.0595 -0.4243 13 6 3.8171 -3.1840 1.4818 14 7 3.0619 -2.5686 2.3653 15 14 4.4385 -4.9116 1.8260 16 1 5.9235 -4.9129 1.8253 17 1 3.9443 -5.3603 3.1525 18 1 3.9423 -5.8349 0.7742 19 6 2.1345 -1.1563 0.0055 20 8 1.5274 -2.2062 -0.0039 21 1 -0.3634 0.0000 -1.0276 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3633 0.8900 0.5140 24 1 1.5108 2.0992 0.1685 25 1 2.9577 1.2612 0.7863 26 1 1.0239 1.3589 -2.4517 27 1 2.4622 0.9583 -3.4203 28 1 1.8248 -0.2173 -2.2452 29 1 3.7174 3.3627 -0.8677 30 1 3.5695 3.0526 -2.6144 31 1 2.1216 3.4352 -1.6527 32 1 4.7370 0.9944 -2.3110 33 1 4.8209 1.1031 -0.5467 34 1 3.5682 -1.0906 -2.0323 35 1 2.8279 -3.0117 3.1958 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219495260.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:30 Heat of formation + Delta-G solvation = -50.264882 kcal Electronic energy + Delta-G solvation = -17204.462630 eV Core-core repulsion = 14622.599342 eV Total energy + Delta-G solvation = -2581.863288 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.47223 -38.41794 -36.27479 -34.67413 -33.84933 -29.72252 -28.52310 -28.09787 -26.75584 -25.64767 -23.90131 -20.59688 -19.56879 -18.40013 -18.04779 -16.95995 -16.76689 -16.39263 -15.94108 -15.06126 -14.93358 -14.45965 -14.33954 -13.77005 -13.61222 -13.37072 -13.08807 -12.89098 -12.85082 -12.70435 -12.65569 -12.35346 -12.21658 -11.96968 -11.77534 -11.55705 -11.33099 -10.65307 -10.39844 -9.40319 -9.02120 -8.16183 -6.23037 1.38122 1.43639 1.49133 2.18167 2.37750 2.48348 3.22884 3.64985 3.81326 3.84315 4.05666 4.26839 4.45802 4.52494 4.56431 4.62322 4.70028 4.77715 4.85898 4.93089 4.97172 5.03495 5.12262 5.16410 5.27401 5.36596 5.48257 5.68296 5.87108 6.00717 6.43999 6.56921 6.75084 6.93825 7.46312 7.83157 8.93174 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.037960 B = 0.010166 C = 0.008978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.434317 B = 2753.690954 C = 3117.975390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.627 5.627 3 C 0.120 3.880 4 C -0.115 4.115 5 C -0.129 4.129 6 C -0.123 4.123 7 C 0.063 3.937 8 N -0.676 5.676 9 C 0.219 3.781 10 H 0.033 0.967 11 C -0.517 4.517 12 H 0.058 0.942 13 C 0.023 3.977 14 N -0.913 5.913 15 Si 0.961 3.039 16 H -0.261 1.261 17 H -0.285 1.285 18 H -0.281 1.281 19 C 0.499 3.501 20 O -0.578 6.578 21 H 0.056 0.944 22 H 0.035 0.965 23 H 0.092 0.908 24 H 0.109 0.891 25 H 0.052 0.948 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.021 0.979 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.089 0.911 33 H 0.061 0.939 34 H 0.331 0.669 35 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.947 13.183 -7.006 15.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.362 5.362 3 C -0.002 4.002 4 C -0.118 4.118 5 C -0.187 4.187 6 C -0.181 4.181 7 C -0.067 4.067 8 N -0.305 5.305 9 C 0.107 3.893 10 H 0.050 0.950 11 C -0.555 4.555 12 H 0.076 0.924 13 C -0.178 4.178 14 N -0.551 5.551 15 Si 0.787 3.213 16 H -0.185 1.185 17 H -0.210 1.210 18 H -0.206 1.206 19 C 0.286 3.714 20 O -0.454 6.454 21 H 0.074 0.926 22 H 0.054 0.946 23 H 0.110 0.890 24 H 0.128 0.872 25 H 0.071 0.929 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.040 0.960 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.107 0.893 33 H 0.080 0.920 34 H 0.149 0.851 35 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -1.688 12.519 -6.642 14.272 hybrid contribution -0.927 -1.021 0.583 1.497 sum -2.615 11.498 -6.060 13.258 Atomic orbital electron populations 1.21567 0.80278 1.02123 1.01300 1.48103 1.06699 1.06772 1.74592 1.22025 0.96261 0.85029 0.96903 1.21489 0.96698 0.98797 0.94853 1.21758 0.99739 0.99221 0.97944 1.21702 1.02699 0.91215 1.02530 1.21844 0.95595 0.86331 1.02908 1.60180 1.56818 1.09613 1.03914 1.19243 0.85270 0.96510 0.88229 0.94982 1.21047 1.31053 1.00458 1.02945 0.92363 1.25680 0.94488 1.01706 0.95913 1.69985 1.36996 1.39161 1.08935 0.85573 0.78997 0.79937 0.76820 1.18541 1.21012 1.20642 1.22625 0.93267 0.82375 0.73120 1.90452 1.71085 1.33781 1.50112 0.92573 0.94570 0.88957 0.87234 0.92927 0.91599 0.91458 0.95964 0.91766 0.91154 0.91208 0.89292 0.92050 0.85118 0.93330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.05 10.22 127.77 1.31 4.36 16 2 N -0.63 -24.88 1.74 -845.37 -1.47 -26.35 16 3 C 0.12 3.65 5.14 86.27 0.44 4.10 16 4 C -0.12 -2.97 0.74 -52.58 -0.04 -3.01 16 5 C -0.13 -3.40 7.07 71.99 0.51 -2.89 16 6 C -0.12 -2.12 8.25 71.98 0.59 -1.53 16 7 C 0.06 1.96 4.74 86.09 0.41 2.37 16 8 N -0.68 -28.44 6.25 -503.29 -3.15 -31.59 16 9 C 0.22 11.37 2.10 43.65 0.09 11.46 16 10 H 0.03 1.78 6.66 -2.39 -0.02 1.77 16 11 C -0.52 -30.60 8.37 25.60 0.21 -30.39 16 12 H 0.06 3.45 7.81 -2.91 -0.02 3.42 16 13 C 0.02 1.35 4.84 84.66 0.41 1.76 16 14 N -0.91 -56.62 12.09 21.45 0.26 -56.36 16 15 Si 0.96 47.63 29.54 68.60 2.03 49.66 16 16 H -0.26 -12.11 7.11 99.48 0.71 -11.40 16 17 H -0.28 -13.74 7.11 99.48 0.71 -13.04 16 18 H -0.28 -13.98 7.11 99.48 0.71 -13.28 16 19 C 0.50 25.66 4.75 88.06 0.42 26.08 16 20 O -0.58 -35.26 14.74 -3.03 -0.04 -35.31 16 21 H 0.06 1.70 8.03 -2.39 -0.02 1.68 16 22 H 0.04 1.47 7.41 -2.39 -0.02 1.45 16 23 H 0.09 2.37 7.88 -2.38 -0.02 2.35 16 24 H 0.11 2.50 7.53 -2.38 -0.02 2.48 16 25 H 0.05 1.81 6.76 -2.39 -0.02 1.80 16 26 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.02 0.75 5.02 -2.39 -0.01 0.74 16 29 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.07 1.00 8.11 -2.38 -0.02 0.98 16 32 H 0.09 2.33 8.10 -2.39 -0.02 2.31 16 33 H 0.06 1.97 7.77 -2.38 -0.02 1.95 16 34 H 0.33 13.94 6.86 -89.69 -0.62 13.32 16 35 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -73.81 270.72 2.44 -71.37 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: 0.46 Total: 16.27 kcal Atomic # 6 Polarization: 7.95 SS G_CDS: 4.36 Total: 12.30 kcal Atomic # 7 Polarization: -109.94 SS G_CDS: -4.35 Total: -114.30 kcal Atomic # 8 Polarization: -35.26 SS G_CDS: -0.04 Total: -35.31 kcal Atomic # 14 Polarization: 47.63 SS G_CDS: 2.03 Total: 49.66 kcal Total: -73.81 2.44 -71.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219495260.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.107 kcal (2) G-P(sol) polarization free energy of solvation -73.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds