Wall clock time and date at job start Mon Mar 30 2020 03:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.47168 * 2 1 4 4 N 1.46901 * 112.84847 * 55.57622 * 3 2 1 5 5 C 1.46896 * 110.99766 * 54.25799 * 4 3 2 6 6 C 1.50706 * 109.46763 * 175.00811 * 5 4 3 7 7 O 1.21291 * 119.99890 * 0.02562 * 6 5 4 8 8 N 1.34772 * 119.99755 * 180.02562 * 6 5 4 9 9 C 1.37100 * 119.99832 * 180.02562 * 8 6 5 10 10 H 1.07997 * 120.00223 * 359.97438 * 9 8 6 11 11 C 1.38954 * 119.99805 * 179.97438 * 9 8 6 12 12 N 1.31414 * 119.99928 * 179.97438 * 11 9 8 13 13 Si 1.86796 * 120.00039 * 359.97438 * 11 9 8 14 14 H 1.48501 * 109.47111 * 90.00617 * 13 11 9 15 15 H 1.48505 * 109.47033 * 210.00050 * 13 11 9 16 16 H 1.48501 * 109.47430 * 330.00180 * 13 11 9 17 17 C 1.53777 * 113.69034 * 186.84659 * 3 2 1 18 18 C 1.53788 * 87.08005 * 89.12716 * 17 3 2 19 19 C 1.53782 * 87.08318 * 25.42909 * 18 17 3 20 20 H 1.09002 * 109.47171 * 175.67259 * 1 2 3 21 21 H 1.09002 * 109.46934 * 295.66754 * 1 2 3 22 22 H 1.08996 * 109.47050 * 55.66515 * 1 2 3 23 23 H 1.09000 * 109.47046 * 239.99641 * 2 1 3 24 24 H 1.09000 * 109.46861 * 119.99762 * 2 1 3 25 25 H 1.00900 * 110.99692 * 178.20817 * 4 3 2 26 26 H 1.08999 * 109.46955 * 295.00246 * 5 4 3 27 27 H 1.08994 * 109.47389 * 55.01067 * 5 4 3 28 28 H 0.97000 * 120.00418 * 359.97438 * 8 6 5 29 29 H 0.97003 * 120.00142 * 179.97438 * 12 11 9 30 30 H 1.08997 * 113.61416 * 203.67085 * 17 3 2 31 31 H 1.08992 * 113.61776 * 334.58303 * 17 3 2 32 32 H 1.09007 * 113.61447 * 270.88421 * 18 17 3 33 33 H 1.08998 * 113.61756 * 139.98164 * 18 17 3 34 34 H 1.08991 * 113.61628 * 220.01961 * 19 18 17 35 35 H 1.09002 * 113.60563 * 89.11472 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 1.5087 2.2354 1.1167 5 6 1.7721 1.5760 2.4026 6 6 1.3241 2.4728 3.5280 7 8 0.8332 3.5545 3.2827 8 7 1.4689 2.0728 4.8068 9 6 1.0608 2.8883 5.8305 10 1 0.6237 3.8515 5.6122 11 6 1.2096 2.4757 7.1490 12 7 0.8189 3.2576 8.1303 13 14 1.9649 0.8095 7.5266 14 1 3.4363 0.9533 7.6665 15 1 1.3963 0.2840 8.7938 16 1 1.6627 -0.1334 6.4198 17 6 3.5642 1.5590 -0.1679 18 6 3.3156 1.5908 -1.6852 19 6 1.9153 2.1399 -1.3650 20 1 -0.3633 -1.0247 -0.0775 21 1 -0.3633 0.4451 0.9263 22 1 -0.3633 0.5796 -0.8486 23 1 1.8934 -0.5139 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 1.8849 3.1716 1.1066 26 1 1.2237 0.6351 2.4476 27 1 2.8399 1.3792 2.4981 28 1 1.8611 1.2076 5.0029 29 1 0.9224 2.9694 9.0507 30 1 3.9772 2.4874 0.2264 31 1 4.1091 0.6764 0.1668 32 1 3.3023 0.6031 -2.1463 33 1 3.9512 2.2987 -2.2171 34 1 1.1292 1.7262 -1.9964 35 1 1.8777 3.2272 -1.2979 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229491078.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:05 Heat of formation + Delta-G solvation = -20.287542 kcal Electronic energy + Delta-G solvation = -15914.012660 eV Core-core repulsion = 13333.449287 eV Total energy + Delta-G solvation = -2580.563373 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.95319 -38.15887 -34.17005 -33.42819 -31.81810 -31.61138 -27.12420 -25.78871 -24.59465 -23.56142 -21.83949 -19.34267 -18.43026 -18.26128 -16.52359 -15.60085 -15.31194 -14.84695 -14.55275 -14.07659 -13.83883 -13.35814 -13.04488 -12.71547 -12.49894 -12.35054 -12.07179 -11.85386 -11.49676 -11.27136 -11.19475 -11.05808 -10.78557 -10.58108 -10.36523 -10.12099 -9.95631 -9.55566 -8.52329 -8.16928 -7.98729 -6.29595 -3.80821 3.04023 3.07735 3.15911 3.77161 4.10950 4.15701 4.57140 4.58900 4.70614 4.79511 4.91378 5.23930 5.32343 5.38861 5.53330 5.63049 5.70114 5.73430 5.79834 5.83568 5.85556 5.92293 5.96859 6.02945 6.12610 6.29857 6.33351 6.52572 7.26130 7.60712 7.70991 8.16734 8.61771 8.96756 9.44492 9.85072 10.83639 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.041743 B = 0.006086 C = 0.005916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.608453 B = 4599.673967 C = 4731.597301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.096 4.096 3 C 0.097 3.903 4 N -0.651 5.651 5 C 0.048 3.952 6 C 0.449 3.551 7 O -0.566 6.566 8 N -0.591 5.591 9 C -0.305 4.305 10 H 0.119 0.881 11 C 0.041 3.959 12 N -0.882 5.882 13 Si 0.879 3.121 14 H -0.271 1.271 15 H -0.276 1.276 16 H -0.269 1.269 17 C -0.176 4.176 18 C -0.139 4.139 19 C -0.126 4.126 20 H 0.045 0.955 21 H 0.068 0.932 22 H 0.053 0.947 23 H 0.064 0.936 24 H 0.062 0.938 25 H 0.352 0.648 26 H 0.087 0.913 27 H 0.043 0.957 28 H 0.370 0.630 29 H 0.273 0.727 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.321 -8.935 -15.978 19.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.134 4.134 3 C 0.005 3.995 4 N -0.283 5.283 5 C -0.085 4.085 6 C 0.235 3.765 7 O -0.448 6.448 8 N -0.231 5.231 9 C -0.433 4.433 10 H 0.137 0.863 11 C -0.162 4.162 12 N -0.522 5.522 13 Si 0.705 3.295 14 H -0.197 1.197 15 H -0.202 1.202 16 H -0.195 1.195 17 C -0.216 4.216 18 C -0.177 4.177 19 C -0.164 4.164 20 H 0.064 0.936 21 H 0.087 0.913 22 H 0.072 0.928 23 H 0.082 0.918 24 H 0.081 0.919 25 H 0.173 0.827 26 H 0.105 0.895 27 H 0.061 0.939 28 H 0.203 0.797 29 H 0.084 0.916 30 H 0.098 0.902 31 H 0.083 0.917 32 H 0.097 0.903 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.302 -8.394 -15.936 18.518 hybrid contribution 1.610 -1.151 0.690 2.095 sum 5.912 -9.545 -15.246 18.934 Atomic orbital electron populations 1.21639 0.94732 1.00405 1.03301 1.21293 0.97083 0.93374 1.01614 1.22356 0.91294 0.94294 0.91555 1.60000 1.62859 1.05292 1.00155 1.21684 0.98936 0.98237 0.89595 1.19796 0.84884 0.88532 0.83259 1.90559 1.47624 1.23293 1.83366 1.42211 1.56801 1.18285 1.05761 1.19440 1.38065 1.01958 0.83874 0.86298 1.25034 0.97741 0.98059 0.95317 1.69624 1.46452 1.36628 0.99520 0.86679 0.80049 0.83860 0.78864 1.19678 1.20156 1.19455 1.23761 0.98725 1.02131 0.96957 1.22724 0.97594 1.01161 0.96225 1.23044 0.96768 1.00696 0.95896 0.93615 0.91335 0.92761 0.91761 0.91886 0.82694 0.89456 0.93876 0.79709 0.91640 0.90153 0.91684 0.90332 0.91610 0.91152 0.89832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.56 37.16 0.36 -1.35 16 2 C -0.10 -1.07 4.66 -26.73 -0.12 -1.20 16 3 C 0.10 1.19 0.70 -130.79 -0.09 1.10 16 4 N -0.65 -10.33 5.52 -100.39 -0.55 -10.88 16 5 C 0.05 0.82 5.36 -4.97 -0.03 0.79 16 6 C 0.45 10.38 7.81 -10.98 -0.09 10.29 16 7 O -0.57 -15.40 15.66 5.55 0.09 -15.32 16 8 N -0.59 -14.32 5.09 -10.96 -0.06 -14.37 16 9 C -0.30 -8.73 10.16 -14.93 -0.15 -8.88 16 10 H 0.12 3.89 7.39 -52.49 -0.39 3.50 16 11 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 12 N -0.88 -26.01 13.96 55.50 0.77 -25.23 16 13 Si 0.88 19.57 27.74 -169.99 -4.71 14.85 16 14 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 15 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 16 H -0.27 -5.48 6.52 56.52 0.37 -5.11 16 17 C -0.18 -1.95 6.97 -25.92 -0.18 -2.13 16 18 C -0.14 -1.32 7.73 -25.91 -0.20 -1.52 16 19 C -0.13 -1.37 7.27 -25.92 -0.19 -1.56 16 20 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 21 H 0.07 0.98 7.04 -51.93 -0.37 0.61 16 22 H 0.05 0.63 7.35 -51.93 -0.38 0.25 16 23 H 0.06 0.61 7.31 -51.93 -0.38 0.23 16 24 H 0.06 0.71 7.04 -51.93 -0.37 0.35 16 25 H 0.35 5.94 8.16 -39.29 -0.32 5.62 16 26 H 0.09 1.38 6.23 -51.93 -0.32 1.05 16 27 H 0.04 0.66 7.79 -51.93 -0.40 0.26 16 28 H 0.37 7.89 5.76 -40.82 -0.24 7.66 16 29 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 30 H 0.08 0.94 8.11 -51.93 -0.42 0.52 16 31 H 0.06 0.69 8.10 -51.93 -0.42 0.27 16 32 H 0.08 0.67 7.61 -51.93 -0.40 0.27 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.72 7.42 -51.93 -0.39 0.34 16 35 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 LS Contribution 282.47 15.07 4.26 4.26 Total: -1.00 -31.51 282.47 -6.22 -37.73 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: -5.22 Total: 12.37 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: -0.79 Total: -3.40 kcal Atomic # 7 Polarization: -50.65 SS G_CDS: 0.16 Total: -50.49 kcal Atomic # 8 Polarization: -15.40 SS G_CDS: 0.09 Total: -15.32 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -4.71 Total: 14.85 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -31.51 -6.22 -37.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229491078.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.438 kcal (2) G-P(sol) polarization free energy of solvation -31.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds