Wall clock time and date at job start Mon Mar 30 2020 03:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 115.54751 * 2 1 4 4 N 1.46901 * 109.47209 * 34.33104 * 3 2 1 5 5 C 1.46895 * 110.99816 * 179.97438 * 4 3 2 6 6 C 1.50706 * 109.47182 * 179.97438 * 5 4 3 7 7 O 1.21283 * 119.99503 * 0.02562 * 6 5 4 8 8 N 1.34773 * 120.00081 * 179.72734 * 6 5 4 9 9 C 1.46506 * 119.99968 * 180.02562 * 8 6 5 10 10 C 1.50690 * 109.47072 * 179.97438 * 9 8 6 11 11 H 1.08002 * 120.00210 * 359.97438 * 10 9 8 12 12 C 1.37878 * 119.99820 * 179.97438 * 10 9 8 13 13 N 1.31512 * 120.00036 * 359.97438 * 12 10 9 14 14 Si 1.86808 * 120.00010 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.47138 * 89.99682 * 14 12 10 16 16 H 1.48493 * 109.47149 * 209.99845 * 14 12 10 17 17 H 1.48499 * 109.46928 * 329.99853 * 14 12 10 18 18 C 1.52999 * 117.51752 * 145.69864 * 2 1 3 19 19 C 1.52995 * 117.50107 * 214.33013 * 2 1 3 20 20 H 1.09000 * 109.46750 * 85.58656 * 1 2 3 21 21 H 1.08997 * 109.47011 * 205.58219 * 1 2 3 22 22 H 1.08995 * 109.47259 * 325.58297 * 1 2 3 23 23 H 1.08998 * 109.47308 * 274.32784 * 3 2 1 24 24 H 1.09009 * 109.46924 * 154.32955 * 3 2 1 25 25 H 1.00902 * 110.99849 * 303.95258 * 4 3 2 26 26 H 1.09001 * 109.47613 * 60.00104 * 5 4 3 27 27 H 1.08998 * 109.47678 * 300.00000 * 5 4 3 28 28 H 0.96998 * 120.00525 * 359.97438 * 8 6 5 29 29 H 1.09004 * 109.46587 * 299.99661 * 9 8 6 30 30 H 1.08998 * 109.47213 * 59.99069 * 9 8 6 31 31 H 0.97005 * 119.99861 * 179.97438 * 13 12 10 32 32 H 1.09001 * 117.49562 * 214.97128 * 18 2 1 33 33 H 1.09000 * 117.50042 * 359.97438 * 18 2 1 34 34 H 1.09001 * 117.50113 * 359.97354 * 19 2 1 35 35 H 1.08997 * 117.50196 * 144.99885 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 7 1.3692 2.3155 0.7811 5 6 1.9736 3.6541 0.8037 6 6 1.1053 4.5838 1.6117 7 8 0.0838 4.1716 2.1192 8 7 1.4670 5.8718 1.7754 9 6 0.6232 6.7754 2.5614 10 6 1.2469 8.1468 2.5906 11 1 2.1789 8.3273 2.0755 12 6 0.6278 9.1713 3.2748 13 7 -0.5073 8.9517 3.9015 14 14 1.4006 10.8717 3.3104 15 1 0.8981 11.6679 2.1621 16 1 1.0407 11.5524 4.5800 17 1 2.8774 10.7462 3.2173 18 6 2.2369 -1.1209 0.7647 19 6 2.2365 -1.1207 -0.7653 20 1 -0.3633 0.0791 -1.0246 21 1 -0.3633 -0.9269 0.4437 22 1 -0.3633 0.8477 0.5808 23 1 2.2766 1.7417 -1.0247 24 1 3.1823 1.3088 0.4452 25 1 0.4250 2.3506 0.4270 26 1 2.0592 4.0315 -0.2154 27 1 2.9643 3.5980 1.2546 28 1 2.2864 6.2003 1.3734 29 1 -0.3661 6.8353 2.1076 30 1 0.5336 6.3956 3.5791 31 1 -0.9427 9.6724 4.3832 32 1 3.1721 -0.8749 1.2677 33 1 1.6120 -1.8584 1.2683 34 1 1.6113 -1.8583 -1.2685 35 1 3.1714 -0.8746 -1.2688 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232804707.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:57 Heat of formation + Delta-G solvation = -42.954018 kcal Electronic energy + Delta-G solvation = -15069.563124 eV Core-core repulsion = 12488.016859 eV Total energy + Delta-G solvation = -2581.546265 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.55905 -39.29750 -36.27803 -35.69356 -34.33386 -30.42570 -29.31072 -28.14302 -25.46690 -24.01419 -23.21752 -21.41591 -20.00996 -18.91149 -17.69534 -17.21784 -16.91855 -16.42698 -16.06822 -15.63469 -15.41009 -14.64254 -14.48725 -14.07861 -14.02131 -13.81157 -13.39008 -13.03475 -12.93304 -12.83852 -12.69232 -12.26690 -12.22397 -11.96197 -11.48679 -11.12016 -10.80189 -10.69335 -10.57301 -9.82232 -9.33161 -8.28993 -6.45846 1.43430 1.46019 1.57308 1.79097 2.29077 2.49104 2.88598 3.05829 3.36269 3.81996 3.90463 4.02169 4.12394 4.20386 4.37948 4.46105 4.66078 4.68086 4.83175 4.94869 5.03195 5.08372 5.11566 5.19492 5.24394 5.31627 5.43930 5.49144 5.69006 5.85056 5.99478 6.32450 6.65587 6.94630 7.23807 7.52414 8.83302 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.079237 B = 0.003977 C = 0.003861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 353.287177 B = 7039.011857 C = 7249.404389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.139 4.139 3 C 0.100 3.900 4 N -0.690 5.690 5 C 0.055 3.945 6 C 0.492 3.508 7 O -0.593 6.593 8 N -0.709 5.709 9 C 0.266 3.734 10 C -0.556 4.556 11 H 0.085 0.915 12 C 0.002 3.998 13 N -0.932 5.932 14 Si 0.986 3.014 15 H -0.270 1.270 16 H -0.285 1.285 17 H -0.255 1.255 18 C -0.176 4.176 19 C -0.161 4.161 20 H 0.064 0.936 21 H 0.060 0.940 22 H 0.055 0.945 23 H 0.046 0.954 24 H 0.081 0.919 25 H 0.346 0.654 26 H 0.085 0.915 27 H 0.121 0.879 28 H 0.409 0.591 29 H -0.013 1.013 30 H -0.015 1.015 31 H 0.269 0.731 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.102 0.898 35 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.083 -15.138 -11.249 20.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.139 4.139 3 C -0.029 4.029 4 N -0.325 5.325 5 C -0.077 4.077 6 C 0.279 3.721 7 O -0.474 6.474 8 N -0.359 5.359 9 C 0.143 3.857 10 C -0.594 4.594 11 H 0.103 0.897 12 C -0.197 4.197 13 N -0.570 5.570 14 Si 0.809 3.191 15 H -0.196 1.196 16 H -0.210 1.210 17 H -0.178 1.178 18 C -0.213 4.213 19 C -0.198 4.198 20 H 0.083 0.917 21 H 0.079 0.921 22 H 0.074 0.926 23 H 0.064 0.936 24 H 0.100 0.900 25 H 0.167 0.833 26 H 0.103 0.897 27 H 0.139 0.861 28 H 0.245 0.755 29 H 0.005 0.995 30 H 0.003 0.997 31 H 0.077 0.923 32 H 0.113 0.887 33 H 0.111 0.889 34 H 0.120 0.880 35 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 8.498 -15.518 -10.183 20.413 hybrid contribution -0.139 1.308 -0.500 1.408 sum 8.358 -14.210 -10.683 19.644 Atomic orbital electron populations 1.21341 0.92466 1.02202 1.01803 1.21453 0.94981 0.90707 1.06805 1.21502 0.96276 0.89618 0.95478 1.60201 1.06369 1.06957 1.58930 1.21765 0.98177 0.88240 0.99483 1.21464 0.86432 0.82972 0.81269 1.90638 1.28593 1.76792 1.51394 1.46175 1.26993 1.09699 1.53064 1.18524 0.89739 0.88333 0.89085 1.21632 1.09303 0.94193 1.34273 0.89705 1.26097 0.95183 1.04333 0.94126 1.70145 1.18366 1.34794 1.33735 0.85135 0.79200 0.77153 0.77592 1.19561 1.21024 1.17837 1.23178 1.02409 1.00842 0.94830 1.23110 1.02526 1.00092 0.94095 0.91742 0.92097 0.92611 0.93599 0.90048 0.83290 0.89718 0.86131 0.75542 0.99529 0.99693 0.92255 0.88676 0.88940 0.88002 0.87734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.44 9.53 71.98 0.69 -1.76 16 2 C -0.14 -2.63 2.57 -52.18 -0.13 -2.76 16 3 C 0.10 1.97 5.87 86.30 0.51 2.48 16 4 N -0.69 -18.72 5.74 -517.92 -2.97 -21.70 16 5 C 0.06 1.47 6.17 85.56 0.53 2.00 16 6 C 0.49 19.83 7.87 87.66 0.69 20.52 16 7 O -0.59 -30.07 16.20 -3.04 -0.05 -30.12 16 8 N -0.71 -30.02 5.55 -466.79 -2.59 -32.61 16 9 C 0.27 14.81 5.43 85.63 0.46 15.28 16 10 C -0.56 -30.42 9.28 25.60 0.24 -30.18 16 11 H 0.08 4.16 7.60 -2.91 -0.02 4.14 16 12 C 0.00 0.12 5.46 84.66 0.46 0.58 16 13 N -0.93 -56.72 13.29 21.45 0.28 -56.44 16 14 Si 0.99 42.37 29.54 68.60 2.03 44.40 16 15 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 16 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 17 H -0.25 -10.14 7.11 99.48 0.71 -9.43 16 18 C -0.18 -3.03 9.82 30.59 0.30 -2.73 16 19 C -0.16 -2.31 9.97 30.59 0.31 -2.01 16 20 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 21 H 0.06 1.14 7.90 -2.39 -0.02 1.13 16 22 H 0.06 1.38 5.84 -2.39 -0.01 1.37 16 23 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 24 H 0.08 1.48 7.90 -2.38 -0.02 1.46 16 25 H 0.35 10.11 6.24 -89.69 -0.56 9.55 16 26 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.12 2.67 8.14 -2.39 -0.02 2.65 16 28 H 0.41 14.03 8.32 -92.71 -0.77 13.26 16 29 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 30 H -0.01 -0.94 8.14 -2.39 -0.02 -0.96 16 31 H 0.27 15.24 8.31 -92.70 -0.77 14.47 16 32 H 0.09 1.59 8.05 -2.39 -0.02 1.57 16 33 H 0.09 1.57 8.05 -2.39 -0.02 1.55 16 34 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -71.41 296.93 0.50 -70.91 By element: Atomic # 1 Polarization: 24.39 SS G_CDS: -0.25 Total: 24.14 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: 4.04 Total: 1.42 kcal Atomic # 7 Polarization: -105.46 SS G_CDS: -5.28 Total: -110.74 kcal Atomic # 8 Polarization: -30.07 SS G_CDS: -0.05 Total: -30.12 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.40 kcal Total: -71.41 0.50 -70.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232804707.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.955 kcal (2) G-P(sol) polarization free energy of solvation -71.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds