Wall clock time and date at job start Mon Mar 30 2020 03:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53008 * 109.46628 * 2 1 4 4 H 1.08997 * 115.55280 * 330.67312 * 3 2 1 5 5 C 1.53007 * 117.51199 * 116.37064 * 3 2 1 6 6 C 1.52998 * 117.49433 * 184.99604 * 3 2 1 7 7 H 1.08993 * 117.50275 * 0.02562 * 6 3 2 8 8 N 1.46907 * 117.49359 * 145.00270 * 6 3 2 9 9 C 1.46896 * 110.99733 * 204.99913 * 8 6 3 10 10 C 1.50703 * 109.47254 * 180.02562 * 9 8 6 11 11 O 1.21283 * 119.99488 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00290 * 180.02562 * 10 9 8 13 13 C 1.46498 * 119.99828 * 180.27728 * 12 10 9 14 14 C 1.50700 * 109.46769 * 179.72341 * 13 12 10 15 15 H 1.07997 * 120.00357 * 359.97438 * 14 13 12 16 16 C 1.37886 * 119.99789 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99860 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00087 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46949 * 60.00023 * 18 16 14 20 20 H 1.48499 * 109.47367 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47219 * 300.00256 * 18 16 14 22 22 H 1.09001 * 109.46561 * 179.97438 * 1 2 3 23 23 H 1.08992 * 109.47344 * 299.99251 * 1 2 3 24 24 H 1.08998 * 109.46814 * 59.99842 * 1 2 3 25 25 H 1.09000 * 109.46991 * 240.00803 * 2 1 3 26 26 H 1.08994 * 109.47277 * 120.00068 * 2 1 3 27 27 H 1.09003 * 117.50026 * 359.97438 * 5 3 2 28 28 H 1.08996 * 117.50021 * 214.96931 * 5 3 2 29 29 H 1.00897 * 111.00241 * 328.95575 * 8 6 3 30 30 H 1.08998 * 109.47322 * 60.00099 * 9 8 6 31 31 H 1.09002 * 109.47668 * 300.00296 * 9 8 6 32 32 H 0.97001 * 119.99727 * 359.97438 * 12 10 9 33 33 H 1.09004 * 109.46963 * 299.72135 * 13 12 10 34 34 H 1.08994 * 109.47567 * 59.72287 * 13 12 10 35 35 H 0.96999 * 120.00067 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.3883 2.1716 -0.4816 5 6 2.8438 1.9081 1.2158 6 6 3.5501 1.6580 -0.1182 7 1 4.1802 0.7722 -0.1964 8 7 4.0108 2.8316 -0.8722 9 6 5.3629 2.6174 -1.4050 10 6 5.8008 3.8397 -2.1700 11 8 5.0593 4.7950 -2.2627 12 7 7.0160 3.8709 -2.7520 13 6 7.4441 5.0615 -3.4906 14 6 8.8331 4.8437 -4.0330 15 1 9.3459 3.9118 -3.8459 16 6 9.4493 5.8342 -4.7681 17 7 8.8251 6.9692 -4.9955 18 14 11.1713 5.5645 -5.4399 19 1 11.1695 4.3909 -6.3498 20 1 11.6048 6.7708 -6.1897 21 1 12.1085 5.3171 -4.3148 22 1 -0.3632 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.8933 -0.5137 -0.8901 26 1 1.8934 -0.5138 0.8899 27 1 3.0091 1.1868 2.0161 28 1 2.7210 2.9434 1.5340 29 1 3.3637 3.0638 -1.6108 30 1 5.3587 1.7541 -2.0703 31 1 6.0538 2.4379 -0.5812 32 1 7.6089 3.1068 -2.6782 33 1 6.7561 5.2438 -4.3161 34 1 7.4459 5.9226 -2.8223 35 1 9.2587 7.6661 -5.5123 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234096063.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:07 Heat of formation + Delta-G solvation = -28.711726 kcal Electronic energy + Delta-G solvation = -14846.826112 eV Core-core repulsion = 12265.897439 eV Total energy + Delta-G solvation = -2580.928673 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.03369 -38.09243 -34.36142 -33.88386 -32.31795 -31.53810 -27.84285 -25.56582 -23.99936 -22.37964 -21.16823 -20.69693 -19.61647 -17.20350 -16.08748 -15.71697 -15.40860 -14.96218 -14.81691 -14.42901 -14.14869 -13.56708 -13.05337 -12.76901 -12.54079 -12.27335 -12.08493 -11.89547 -11.56674 -11.40427 -11.21153 -10.99616 -10.86452 -10.57577 -10.31378 -10.02584 -9.40737 -9.01878 -8.72599 -8.22916 -7.85843 -6.15972 -4.23110 3.25465 3.30159 3.31695 3.39017 3.67197 3.71941 4.28340 4.47066 4.62349 4.78577 4.95808 5.05395 5.15080 5.19832 5.23808 5.37616 5.52509 5.54319 5.61080 5.67054 5.72494 5.83509 5.90324 5.99408 6.19946 6.98565 7.32238 7.37662 7.45672 7.53148 7.67830 7.97947 8.64036 8.79104 9.12308 9.43522 10.94237 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.074330 B = 0.003733 C = 0.003682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 376.610077 B = 7499.515213 C = 7603.640993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.093 4.093 3 C -0.165 4.165 4 H 0.107 0.893 5 C -0.164 4.164 6 C 0.021 3.979 7 H 0.099 0.901 8 N -0.642 5.642 9 C 0.042 3.958 10 C 0.496 3.504 11 O -0.544 6.544 12 N -0.714 5.714 13 C 0.251 3.749 14 C -0.544 4.544 15 H 0.062 0.938 16 C 0.063 3.937 17 N -0.886 5.886 18 Si 0.904 3.096 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.275 1.275 22 H 0.052 0.948 23 H 0.055 0.945 24 H 0.054 0.946 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.092 0.908 28 H 0.099 0.901 29 H 0.353 0.647 30 H 0.055 0.945 31 H 0.097 0.903 32 H 0.390 0.610 33 H 0.026 0.974 34 H 0.027 0.973 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.612 -14.475 9.173 20.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.131 4.131 3 C -0.184 4.184 4 H 0.125 0.875 5 C -0.203 4.203 6 C -0.090 4.090 7 H 0.117 0.883 8 N -0.274 5.274 9 C -0.090 4.090 10 C 0.280 3.720 11 O -0.422 6.422 12 N -0.363 5.363 13 C 0.130 3.870 14 C -0.583 4.583 15 H 0.080 0.920 16 C -0.140 4.140 17 N -0.523 5.523 18 Si 0.732 3.268 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.201 1.201 22 H 0.071 0.929 23 H 0.074 0.926 24 H 0.073 0.927 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.110 0.890 28 H 0.117 0.883 29 H 0.174 0.826 30 H 0.073 0.927 31 H 0.115 0.885 32 H 0.222 0.778 33 H 0.044 0.956 34 H 0.045 0.955 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.879 -13.217 9.521 19.588 hybrid contribution 1.125 -0.987 -1.058 1.833 sum -9.754 -14.204 8.463 19.197 Atomic orbital electron populations 1.21740 0.95488 1.01407 1.02015 1.21124 0.96014 0.94175 1.01777 1.22811 0.93773 0.97972 1.03836 0.87531 1.23317 1.03075 1.02599 0.91273 1.22487 0.93586 0.93389 0.99537 0.88313 1.59851 1.02855 1.34079 1.30636 1.21880 0.92099 0.96134 0.98899 1.20351 0.82760 0.88749 0.80142 1.90665 1.53634 1.37047 1.60897 1.46441 1.15783 1.20757 1.53339 1.19088 0.94607 0.82209 0.91100 1.21198 1.00153 1.02006 1.34913 0.91952 1.24960 0.98439 0.94832 0.95806 1.69966 1.37901 1.05457 1.38969 0.86466 0.83654 0.77676 0.79054 1.20086 1.21059 1.20052 0.92862 0.92588 0.92651 0.91865 0.91902 0.88998 0.88265 0.82633 0.92663 0.88462 0.77769 0.95602 0.95521 0.92376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.87 37.16 0.37 -0.71 16 2 C -0.09 -0.74 6.22 -26.73 -0.17 -0.91 16 3 C -0.16 -1.60 5.54 -90.61 -0.50 -2.10 16 4 H 0.11 1.10 8.07 -51.93 -0.42 0.68 16 5 C -0.16 -1.69 10.11 -26.73 -0.27 -1.96 16 6 C 0.02 0.23 5.98 -67.71 -0.40 -0.17 16 7 H 0.10 0.99 7.90 -51.93 -0.41 0.58 16 8 N -0.64 -9.23 6.37 -107.99 -0.69 -9.92 16 9 C 0.04 0.62 6.02 -4.98 -0.03 0.59 16 10 C 0.50 10.01 7.87 -10.98 -0.09 9.93 16 11 O -0.54 -13.36 16.20 5.55 0.09 -13.27 16 12 N -0.71 -15.12 5.55 -61.47 -0.34 -15.46 16 13 C 0.25 6.72 5.43 -5.19 -0.03 6.70 16 14 C -0.54 -14.87 9.28 -34.44 -0.32 -15.19 16 15 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 16 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 17 N -0.89 -26.30 13.29 55.43 0.74 -25.56 16 18 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 19 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 20 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 22 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 23 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.46 7.88 -51.93 -0.41 0.06 16 27 H 0.09 0.80 8.03 -51.93 -0.42 0.38 16 28 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.35 5.25 8.39 -39.29 -0.33 4.92 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.39 6.99 8.32 -40.82 -0.34 6.65 16 33 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.27 7.42 8.31 -40.82 -0.34 7.09 16 LS Contribution 301.79 15.07 4.55 4.55 Total: -1.00 -31.85 301.79 -7.88 -39.73 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -5.66 Total: 6.20 kcal Atomic # 6 Polarization: -0.62 SS G_CDS: -1.54 Total: -2.16 kcal Atomic # 7 Polarization: -50.64 SS G_CDS: -0.29 Total: -50.94 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: 0.09 Total: -13.27 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -31.85 -7.88 -39.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234096063.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.018 kcal (2) G-P(sol) polarization free energy of solvation -31.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds