Wall clock time and date at job start Mon Mar 30 2020 03:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53008 * 109.46628 * 2 1 4 4 H 1.08997 * 115.55280 * 330.67312 * 3 2 1 5 5 C 1.53007 * 117.51199 * 116.37064 * 3 2 1 6 6 C 1.52998 * 117.49433 * 184.99604 * 3 2 1 7 7 H 1.08993 * 117.50275 * 0.02562 * 6 3 2 8 8 N 1.46907 * 117.49359 * 145.00270 * 6 3 2 9 9 C 1.46896 * 110.99733 * 204.99913 * 8 6 3 10 10 C 1.50703 * 109.47254 * 180.02562 * 9 8 6 11 11 O 1.21283 * 119.99488 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00290 * 180.02562 * 10 9 8 13 13 C 1.46498 * 119.99828 * 180.27728 * 12 10 9 14 14 C 1.50700 * 109.46769 * 179.72341 * 13 12 10 15 15 H 1.07997 * 120.00357 * 359.97438 * 14 13 12 16 16 C 1.37886 * 119.99789 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99860 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00087 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46949 * 60.00023 * 18 16 14 20 20 H 1.48499 * 109.47367 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47219 * 300.00256 * 18 16 14 22 22 H 1.09001 * 109.46561 * 179.97438 * 1 2 3 23 23 H 1.08992 * 109.47344 * 299.99251 * 1 2 3 24 24 H 1.08998 * 109.46814 * 59.99842 * 1 2 3 25 25 H 1.09000 * 109.46991 * 240.00803 * 2 1 3 26 26 H 1.08994 * 109.47277 * 120.00068 * 2 1 3 27 27 H 1.09003 * 117.50026 * 359.97438 * 5 3 2 28 28 H 1.08996 * 117.50021 * 214.96931 * 5 3 2 29 29 H 1.00897 * 111.00241 * 328.95575 * 8 6 3 30 30 H 1.08998 * 109.47322 * 60.00099 * 9 8 6 31 31 H 1.09002 * 109.47668 * 300.00296 * 9 8 6 32 32 H 0.97001 * 119.99727 * 359.97438 * 12 10 9 33 33 H 1.09004 * 109.46963 * 299.72135 * 13 12 10 34 34 H 1.08994 * 109.47567 * 59.72287 * 13 12 10 35 35 H 0.96999 * 120.00067 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.3883 2.1716 -0.4816 5 6 2.8438 1.9081 1.2158 6 6 3.5501 1.6580 -0.1182 7 1 4.1802 0.7722 -0.1964 8 7 4.0108 2.8316 -0.8722 9 6 5.3629 2.6174 -1.4050 10 6 5.8008 3.8397 -2.1700 11 8 5.0593 4.7950 -2.2627 12 7 7.0160 3.8709 -2.7520 13 6 7.4441 5.0615 -3.4906 14 6 8.8331 4.8437 -4.0330 15 1 9.3459 3.9118 -3.8459 16 6 9.4493 5.8342 -4.7681 17 7 8.8251 6.9692 -4.9955 18 14 11.1713 5.5645 -5.4399 19 1 11.1695 4.3909 -6.3498 20 1 11.6048 6.7708 -6.1897 21 1 12.1085 5.3171 -4.3148 22 1 -0.3632 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.8933 -0.5137 -0.8901 26 1 1.8934 -0.5138 0.8899 27 1 3.0091 1.1868 2.0161 28 1 2.7210 2.9434 1.5340 29 1 3.3637 3.0638 -1.6108 30 1 5.3587 1.7541 -2.0703 31 1 6.0538 2.4379 -0.5812 32 1 7.6089 3.1068 -2.6782 33 1 6.7561 5.2438 -4.3161 34 1 7.4459 5.9226 -2.8223 35 1 9.2587 7.6661 -5.5123 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234096063.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:07 Heat of formation + Delta-G solvation = -52.393709 kcal Electronic energy + Delta-G solvation = -14847.853040 eV Core-core repulsion = 12265.897439 eV Total energy + Delta-G solvation = -2581.955601 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.57571 -39.10540 -36.18157 -35.05815 -34.33667 -32.33744 -29.72893 -27.07958 -24.68044 -24.32609 -22.06528 -21.62716 -21.17386 -18.96505 -17.64130 -17.21950 -16.85023 -16.44183 -16.14353 -15.49539 -15.32380 -14.93146 -14.45933 -14.14371 -13.92729 -13.72132 -13.23182 -13.01504 -12.94199 -12.82682 -12.66692 -12.23994 -12.10973 -11.89110 -11.51770 -11.42801 -10.87965 -10.79541 -10.63813 -9.83731 -9.22774 -8.29301 -6.46368 1.43116 1.47436 1.55659 1.76659 2.27119 2.47054 2.86440 3.05399 3.20077 3.84928 3.97305 4.03139 4.18384 4.30570 4.39401 4.45986 4.50622 4.61000 4.84508 4.91173 5.05454 5.11128 5.18034 5.23462 5.28574 5.31145 5.48056 5.51306 5.68477 5.84272 6.03274 6.26276 6.64762 6.92683 7.23173 7.50534 8.82835 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.074330 B = 0.003733 C = 0.003682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 376.610077 B = 7499.515213 C = 7603.640993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.090 4.090 3 C -0.156 4.156 4 H 0.095 0.905 5 C -0.165 4.165 6 C 0.012 3.988 7 H 0.120 0.880 8 N -0.664 5.664 9 C 0.060 3.940 10 C 0.491 3.509 11 O -0.595 6.595 12 N -0.708 5.708 13 C 0.267 3.733 14 C -0.558 4.558 15 H 0.085 0.915 16 C 0.002 3.998 17 N -0.932 5.932 18 Si 0.986 3.014 19 H -0.261 1.261 20 H -0.286 1.286 21 H -0.262 1.262 22 H 0.064 0.936 23 H 0.054 0.946 24 H 0.049 0.951 25 H 0.067 0.933 26 H 0.073 0.927 27 H 0.112 0.888 28 H 0.081 0.919 29 H 0.345 0.655 30 H 0.089 0.911 31 H 0.122 0.878 32 H 0.409 0.591 33 H -0.013 1.013 34 H -0.015 1.015 35 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.531 -17.270 9.744 22.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.127 4.127 3 C -0.175 4.175 4 H 0.113 0.887 5 C -0.203 4.203 6 C -0.098 4.098 7 H 0.137 0.863 8 N -0.296 5.296 9 C -0.072 4.072 10 C 0.278 3.722 11 O -0.476 6.476 12 N -0.358 5.358 13 C 0.144 3.856 14 C -0.595 4.595 15 H 0.103 0.897 16 C -0.197 4.197 17 N -0.571 5.571 18 Si 0.809 3.191 19 H -0.185 1.185 20 H -0.211 1.211 21 H -0.186 1.186 22 H 0.083 0.917 23 H 0.073 0.927 24 H 0.068 0.932 25 H 0.086 0.914 26 H 0.092 0.908 27 H 0.130 0.870 28 H 0.100 0.900 29 H 0.165 0.835 30 H 0.107 0.893 31 H 0.139 0.861 32 H 0.245 0.755 33 H 0.005 0.995 34 H 0.003 0.997 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.799 -16.076 10.125 21.377 hybrid contribution 0.690 -0.094 -1.194 1.382 sum -9.109 -16.169 8.932 20.596 Atomic orbital electron populations 1.21743 0.95119 1.02085 1.01740 1.21130 0.96311 0.92778 1.02499 1.22829 0.92792 0.98930 1.02973 0.88714 1.23359 1.03009 1.02247 0.91709 1.22608 0.94745 0.92888 0.99535 0.86285 1.59841 1.02665 1.36402 1.30702 1.21793 0.92617 0.93393 0.99371 1.21456 0.81499 0.89982 0.79223 1.90642 1.54867 1.39539 1.62506 1.46167 1.16869 1.19741 1.53054 1.18519 0.94399 0.83246 0.89460 1.21609 1.00165 1.02991 1.34766 0.89663 1.26102 1.03424 0.94265 0.95933 1.70138 1.40255 1.06726 1.39947 0.85185 0.77454 0.77825 0.78621 1.18548 1.21146 1.18613 0.91706 0.92701 0.93162 0.91448 0.90799 0.86985 0.90010 0.83488 0.89318 0.86061 0.75476 0.99536 0.99722 0.92234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.87 71.98 0.71 -1.17 16 2 C -0.09 -1.20 6.22 30.60 0.19 -1.01 16 3 C -0.16 -2.78 5.54 -10.79 -0.06 -2.84 16 4 H 0.09 1.92 8.07 -2.39 -0.02 1.90 16 5 C -0.17 -3.10 10.11 30.60 0.31 -2.80 16 6 C 0.01 0.24 5.98 44.91 0.27 0.51 16 7 H 0.12 1.93 7.90 -2.39 -0.02 1.91 16 8 N -0.66 -18.35 6.37 -495.57 -3.16 -21.51 16 9 C 0.06 1.61 6.02 85.56 0.51 2.13 16 10 C 0.49 19.86 7.87 87.66 0.69 20.55 16 11 O -0.59 -30.28 16.20 -3.04 -0.05 -30.33 16 12 N -0.71 -29.96 5.55 -466.79 -2.59 -32.55 16 13 C 0.27 14.85 5.43 85.63 0.46 15.32 16 14 C -0.56 -30.49 9.28 25.60 0.24 -30.25 16 15 H 0.09 4.17 7.60 -2.91 -0.02 4.14 16 16 C 0.00 0.13 5.46 84.66 0.46 0.59 16 17 N -0.93 -56.81 13.29 21.45 0.28 -56.52 16 18 Si 0.99 42.34 29.54 68.60 2.03 44.37 16 19 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 20 H -0.29 -12.21 7.11 99.48 0.71 -11.51 16 21 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 22 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 23 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 24 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 25 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.07 0.85 7.88 -2.39 -0.02 0.83 16 27 H 0.11 1.64 8.03 -2.39 -0.02 1.62 16 28 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.35 10.25 8.39 -89.70 -0.75 9.50 16 30 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.12 2.74 8.14 -2.39 -0.02 2.72 16 32 H 0.41 13.99 8.32 -92.71 -0.77 13.22 16 33 H -0.01 -0.83 8.14 -2.38 -0.02 -0.85 16 34 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 35 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -71.60 301.79 -0.14 -71.75 By element: Atomic # 1 Polarization: 24.22 SS G_CDS: -0.45 Total: 23.78 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: 3.79 Total: 1.02 kcal Atomic # 7 Polarization: -105.12 SS G_CDS: -5.46 Total: -110.58 kcal Atomic # 8 Polarization: -30.28 SS G_CDS: -0.05 Total: -30.33 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Total: -71.60 -0.14 -71.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234096063.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.352 kcal (2) G-P(sol) polarization free energy of solvation -71.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds