Wall clock time and date at job start Mon Mar 30 2020 03:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.47000 * 2 1 4 4 C 1.52998 * 109.47306 * 120.00002 * 2 1 3 5 5 C 1.52998 * 109.47076 * 173.89237 * 4 2 1 6 6 H 1.08997 * 110.49042 * 311.41829 * 5 4 2 7 7 C 1.54096 * 110.54998 * 74.27918 * 5 4 2 8 8 N 1.47053 * 103.86362 * 118.59251 * 7 5 4 9 9 C 1.37198 * 125.41070 * 180.02562 * 8 7 5 10 10 H 1.08003 * 120.00184 * 185.16922 * 9 8 7 11 11 C 1.38877 * 119.99870 * 5.16378 * 9 8 7 12 12 N 1.31478 * 119.99998 * 5.30501 * 11 9 8 13 13 Si 1.86806 * 119.99767 * 185.30000 * 11 9 8 14 14 H 1.48500 * 109.47271 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.46644 * 120.00289 * 13 11 9 16 16 H 1.48498 * 109.46994 * 239.99835 * 13 11 9 17 17 C 1.33948 * 109.18028 * 359.97438 * 8 7 5 18 18 O 1.21587 * 123.04274 * 179.97438 * 17 8 7 19 19 N 1.33950 * 113.91446 * 0.02562 * 17 8 7 20 20 C 1.46496 * 125.40870 * 179.97438 * 19 17 8 21 21 H 1.08995 * 109.46711 * 299.99833 * 1 2 3 22 22 H 1.09000 * 109.47087 * 59.99929 * 1 2 3 23 23 H 1.08997 * 109.46817 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46942 * 240.00132 * 2 1 3 25 25 H 1.09001 * 109.47147 * 187.12437 * 3 2 1 26 26 H 1.08997 * 109.47395 * 307.12772 * 3 2 1 27 27 H 1.09005 * 109.47110 * 67.12408 * 3 2 1 28 28 H 1.08999 * 109.46972 * 293.89626 * 4 2 1 29 29 H 1.09003 * 109.47260 * 53.88887 * 4 2 1 30 30 H 1.09001 * 110.54973 * 237.18813 * 7 5 4 31 31 H 1.09003 * 110.54876 * 359.97438 * 7 5 4 32 32 H 0.96995 * 119.99659 * 180.02562 * 12 11 9 33 33 H 1.08997 * 109.47335 * 265.02437 * 20 19 17 34 34 H 1.09003 * 109.47308 * 25.02799 * 20 19 17 35 35 H 1.09000 * 109.46755 * 145.02361 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5624 -0.8555 1.1748 6 1 3.8640 -1.2451 0.2025 7 6 4.2392 0.5011 1.4510 8 7 5.0437 0.2543 2.6570 9 6 5.8331 1.1813 3.2894 10 1 6.4534 0.8843 4.1221 11 6 5.8347 2.5016 2.8586 12 7 5.0042 2.8860 1.9146 13 14 7.0167 3.7312 3.6204 14 1 7.8400 3.0520 4.6530 15 1 7.9037 4.2840 2.5655 16 1 6.2464 4.8349 4.2479 17 6 4.8825 -1.0189 3.0406 18 8 5.4362 -1.4932 4.0137 19 7 4.0571 -1.7225 2.2547 20 6 3.7035 -3.1319 2.4411 21 1 -0.3632 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 3.1226 1.4452 -0.1275 26 1 1.5764 1.9918 -0.8193 27 1 1.7845 1.9182 0.9469 28 1 1.7688 -0.1482 2.1358 29 1 1.5902 -1.7125 1.3056 30 1 4.8790 0.7865 0.6160 31 1 3.4907 1.2704 1.6408 32 1 5.0056 3.8081 1.6135 33 1 4.3568 -3.7543 1.8296 34 1 3.8234 -3.4008 3.4906 35 1 2.6673 -3.2891 2.1418 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259478711.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:36 Heat of formation + Delta-G solvation = -14.625855 kcal Electronic energy + Delta-G solvation = -16696.302276 eV Core-core repulsion = 14115.984412 eV Total energy + Delta-G solvation = -2580.317864 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.06094 -36.61658 -34.59860 -34.17413 -31.49819 -29.36016 -27.12893 -26.87806 -25.10802 -24.04887 -20.96734 -19.79009 -19.09436 -17.38633 -15.47899 -15.21319 -15.09080 -14.65440 -14.27912 -13.75607 -13.40221 -13.15788 -12.85744 -12.55991 -12.29183 -11.97132 -11.66500 -11.45288 -11.34716 -11.21112 -10.89269 -10.66665 -10.48324 -10.32393 -10.29801 -10.20705 -9.96557 -9.04797 -8.70625 -7.96922 -7.56330 -6.21911 -3.69754 3.22074 3.29715 3.35794 3.71280 4.29943 4.35397 5.02789 5.13773 5.20952 5.32598 5.41712 5.52544 5.62639 5.77015 5.83381 5.92499 5.96537 6.03071 6.06251 6.17913 6.19575 6.37307 6.42026 6.45411 6.68682 6.82779 6.87064 7.09651 7.38060 7.59295 7.77365 8.35168 8.72003 9.31298 9.51088 10.26308 10.87139 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.023975 B = 0.010847 C = 0.007744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.582921 B = 2580.704464 C = 3615.035570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.093 4.093 3 C -0.156 4.156 4 C -0.117 4.117 5 C 0.110 3.890 6 H 0.068 0.932 7 C 0.128 3.872 8 N -0.472 5.472 9 C -0.273 4.273 10 H 0.101 0.899 11 C 0.022 3.978 12 N -0.900 5.900 13 Si 0.931 3.069 14 H -0.270 1.270 15 H -0.282 1.282 16 H -0.283 1.283 17 C 0.649 3.351 18 O -0.629 6.629 19 N -0.649 5.649 20 C 0.130 3.870 21 H 0.053 0.947 22 H 0.051 0.949 23 H 0.048 0.952 24 H 0.066 0.934 25 H 0.079 0.921 26 H 0.043 0.957 27 H 0.059 0.941 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.109 0.891 32 H 0.265 0.735 33 H 0.039 0.961 34 H 0.069 0.931 35 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.990 -3.869 -6.524 11.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.112 4.112 3 C -0.213 4.213 4 C -0.156 4.156 5 C 0.005 3.995 6 H 0.086 0.914 7 C 0.004 3.996 8 N -0.196 5.196 9 C -0.400 4.400 10 H 0.119 0.881 11 C -0.179 4.179 12 N -0.542 5.542 13 Si 0.758 3.242 14 H -0.195 1.195 15 H -0.209 1.209 16 H -0.209 1.209 17 C 0.352 3.648 18 O -0.513 6.513 19 N -0.389 5.389 20 C -0.013 4.013 21 H 0.072 0.928 22 H 0.070 0.930 23 H 0.068 0.932 24 H 0.085 0.915 25 H 0.098 0.902 26 H 0.062 0.938 27 H 0.078 0.922 28 H 0.086 0.914 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.127 0.873 32 H 0.075 0.925 33 H 0.057 0.943 34 H 0.088 0.912 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.660 -3.931 -6.025 10.509 hybrid contribution 0.410 0.653 0.091 0.777 sum -7.250 -3.278 -5.934 9.926 Atomic orbital electron populations 1.21828 0.95738 1.01046 1.01538 1.21075 0.95120 0.97290 0.97680 1.22180 1.03027 0.94627 1.01418 1.21960 0.94980 1.00147 0.98471 1.22209 0.94053 0.92251 0.90968 0.91428 1.22676 0.95226 0.92767 0.88915 1.42852 1.43522 1.07535 1.25655 1.19475 1.19145 0.87419 1.14004 0.88085 1.25143 0.98107 0.97340 0.97286 1.69862 1.36602 1.17809 1.29911 0.85776 0.79757 0.79952 0.78715 1.19474 1.20856 1.20892 1.15863 0.82469 0.82713 0.83748 1.90715 1.56457 1.73618 1.30473 1.46960 1.50706 1.10343 1.30892 1.21060 0.98543 0.79759 1.01913 0.92783 0.92979 0.93242 0.91549 0.90246 0.93819 0.92194 0.91390 0.92283 0.91671 0.87333 0.92478 0.94278 0.91181 0.92551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.19 37.16 0.34 -1.30 16 2 C -0.09 -1.24 2.90 -90.62 -0.26 -1.50 16 3 C -0.16 -2.35 7.61 37.16 0.28 -2.07 16 4 C -0.12 -1.82 4.47 -26.73 -0.12 -1.94 16 5 C 0.11 2.06 3.40 -67.06 -0.23 1.84 16 6 H 0.07 1.15 8.09 -51.93 -0.42 0.73 16 7 C 0.13 2.90 3.30 -3.17 -0.01 2.89 16 8 N -0.47 -12.86 3.07 -119.61 -0.37 -13.23 16 9 C -0.27 -7.85 9.93 -14.91 -0.15 -8.00 16 10 H 0.10 3.02 7.67 -52.48 -0.40 2.62 16 11 C 0.02 0.58 5.46 -17.47 -0.10 0.48 16 12 N -0.90 -23.61 10.44 55.49 0.58 -23.03 16 13 Si 0.93 21.13 29.56 -169.99 -5.02 16.11 16 14 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 15 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 16 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 17 C 0.65 17.40 8.24 -88.40 -0.73 16.67 16 18 O -0.63 -18.90 16.95 5.29 0.09 -18.81 16 19 N -0.65 -13.78 3.08 -179.12 -0.55 -14.34 16 20 C 0.13 2.18 10.94 59.84 0.65 2.83 16 21 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 22 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.07 0.83 8.11 -51.93 -0.42 0.41 16 25 H 0.08 1.36 5.37 -51.93 -0.28 1.08 16 26 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 1.00 7.53 -51.93 -0.39 0.61 16 28 H 0.07 1.19 8.00 -51.93 -0.42 0.78 16 29 H 0.06 0.82 7.02 -51.93 -0.36 0.46 16 30 H 0.07 1.54 7.55 -51.93 -0.39 1.14 16 31 H 0.11 2.51 4.15 -51.93 -0.22 2.30 16 32 H 0.26 6.60 8.31 -40.82 -0.34 6.26 16 33 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 1.23 7.81 -51.93 -0.41 0.83 16 35 H 0.06 0.75 7.02 -51.93 -0.36 0.39 16 LS Contribution 277.19 15.07 4.18 4.18 Total: -1.00 -31.77 277.19 -6.73 -38.50 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -5.32 Total: 0.71 kcal Atomic # 6 Polarization: 10.21 SS G_CDS: -0.31 Total: 9.90 kcal Atomic # 7 Polarization: -50.25 SS G_CDS: -0.34 Total: -50.59 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: 0.09 Total: -18.81 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -31.77 -6.73 -38.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259478711.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.878 kcal (2) G-P(sol) polarization free energy of solvation -31.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds