Wall clock time and date at job start Mon Mar 30 2020 03:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.47000 * 2 1 4 4 C 1.52998 * 109.47306 * 120.00002 * 2 1 3 5 5 C 1.52998 * 109.47076 * 173.89237 * 4 2 1 6 6 H 1.08997 * 110.49042 * 311.41829 * 5 4 2 7 7 C 1.54096 * 110.54998 * 74.27918 * 5 4 2 8 8 N 1.47053 * 103.86362 * 118.59251 * 7 5 4 9 9 C 1.37198 * 125.41070 * 180.02562 * 8 7 5 10 10 H 1.08003 * 120.00184 * 185.16922 * 9 8 7 11 11 C 1.38877 * 119.99870 * 5.16378 * 9 8 7 12 12 N 1.31478 * 119.99998 * 5.30501 * 11 9 8 13 13 Si 1.86806 * 119.99767 * 185.30000 * 11 9 8 14 14 H 1.48500 * 109.47271 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.46644 * 120.00289 * 13 11 9 16 16 H 1.48498 * 109.46994 * 239.99835 * 13 11 9 17 17 C 1.33948 * 109.18028 * 359.97438 * 8 7 5 18 18 O 1.21587 * 123.04274 * 179.97438 * 17 8 7 19 19 N 1.33950 * 113.91446 * 0.02562 * 17 8 7 20 20 C 1.46496 * 125.40870 * 179.97438 * 19 17 8 21 21 H 1.08995 * 109.46711 * 299.99833 * 1 2 3 22 22 H 1.09000 * 109.47087 * 59.99929 * 1 2 3 23 23 H 1.08997 * 109.46817 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46942 * 240.00132 * 2 1 3 25 25 H 1.09001 * 109.47147 * 187.12437 * 3 2 1 26 26 H 1.08997 * 109.47395 * 307.12772 * 3 2 1 27 27 H 1.09005 * 109.47110 * 67.12408 * 3 2 1 28 28 H 1.08999 * 109.46972 * 293.89626 * 4 2 1 29 29 H 1.09003 * 109.47260 * 53.88887 * 4 2 1 30 30 H 1.09001 * 110.54973 * 237.18813 * 7 5 4 31 31 H 1.09003 * 110.54876 * 359.97438 * 7 5 4 32 32 H 0.96995 * 119.99659 * 180.02562 * 12 11 9 33 33 H 1.08997 * 109.47335 * 265.02437 * 20 19 17 34 34 H 1.09003 * 109.47308 * 25.02799 * 20 19 17 35 35 H 1.09000 * 109.46755 * 145.02361 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5624 -0.8555 1.1748 6 1 3.8640 -1.2451 0.2025 7 6 4.2392 0.5011 1.4510 8 7 5.0437 0.2543 2.6570 9 6 5.8331 1.1813 3.2894 10 1 6.4534 0.8843 4.1221 11 6 5.8347 2.5016 2.8586 12 7 5.0042 2.8860 1.9146 13 14 7.0167 3.7312 3.6204 14 1 7.8400 3.0520 4.6530 15 1 7.9037 4.2840 2.5655 16 1 6.2464 4.8349 4.2479 17 6 4.8825 -1.0189 3.0406 18 8 5.4362 -1.4932 4.0137 19 7 4.0571 -1.7225 2.2547 20 6 3.7035 -3.1319 2.4411 21 1 -0.3632 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 3.1226 1.4452 -0.1275 26 1 1.5764 1.9918 -0.8193 27 1 1.7845 1.9182 0.9469 28 1 1.7688 -0.1482 2.1358 29 1 1.5902 -1.7125 1.3056 30 1 4.8790 0.7865 0.6160 31 1 3.4907 1.2704 1.6408 32 1 5.0056 3.8081 1.6135 33 1 4.3568 -3.7543 1.8296 34 1 3.8234 -3.4008 3.4906 35 1 2.6673 -3.2891 2.1418 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259478711.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:36 Heat of formation + Delta-G solvation = -34.775314 kcal Electronic energy + Delta-G solvation = -16697.176022 eV Core-core repulsion = 14115.984412 eV Total energy + Delta-G solvation = -2581.191610 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.87830 -38.15915 -36.53857 -35.83225 -33.48237 -30.87316 -28.68702 -28.21304 -26.65886 -25.85035 -22.61548 -20.96673 -20.94205 -19.38661 -17.36356 -16.96997 -16.89005 -16.12544 -15.85906 -15.33787 -14.89957 -14.76043 -14.54549 -13.99777 -13.63259 -13.54546 -13.17734 -12.97908 -12.85212 -12.79136 -12.51784 -12.35478 -12.12897 -11.88195 -11.61252 -11.47317 -11.43032 -11.04625 -10.78247 -9.96259 -9.33475 -8.28218 -5.84773 1.39931 1.41637 1.55226 2.01721 2.33020 2.42682 3.19679 3.55011 3.74599 3.96195 4.02724 4.23665 4.28823 4.43582 4.52788 4.72688 4.81699 4.88600 4.91588 4.96174 5.03158 5.06123 5.16564 5.25827 5.34323 5.39620 5.43329 5.58777 5.61939 5.66551 6.04297 6.30717 6.70340 7.24364 7.47689 8.21189 8.78252 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.023975 B = 0.010847 C = 0.007744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.582921 B = 2580.704464 C = 3615.035570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.086 4.086 3 C -0.152 4.152 4 C -0.107 4.107 5 C 0.116 3.884 6 H 0.096 0.904 7 C 0.133 3.867 8 N -0.492 5.492 9 C -0.321 4.321 10 H 0.073 0.927 11 C -0.006 4.006 12 N -0.902 5.902 13 Si 0.996 3.004 14 H -0.277 1.277 15 H -0.269 1.269 16 H -0.271 1.271 17 C 0.631 3.369 18 O -0.676 6.676 19 N -0.644 5.644 20 C 0.123 3.877 21 H 0.044 0.956 22 H 0.065 0.935 23 H 0.066 0.934 24 H 0.087 0.913 25 H 0.054 0.946 26 H 0.062 0.938 27 H 0.035 0.965 28 H 0.042 0.958 29 H 0.087 0.913 30 H 0.049 0.951 31 H 0.100 0.900 32 H 0.273 0.727 33 H 0.058 0.942 34 H 0.053 0.947 35 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.459 -4.009 -8.319 13.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.105 4.105 3 C -0.209 4.209 4 C -0.146 4.146 5 C 0.012 3.988 6 H 0.114 0.886 7 C 0.010 3.990 8 N -0.215 5.215 9 C -0.449 4.449 10 H 0.091 0.909 11 C -0.207 4.207 12 N -0.542 5.542 13 Si 0.819 3.181 14 H -0.202 1.202 15 H -0.194 1.194 16 H -0.196 1.196 17 C 0.334 3.666 18 O -0.564 6.564 19 N -0.383 5.383 20 C -0.018 4.018 21 H 0.063 0.937 22 H 0.084 0.916 23 H 0.085 0.915 24 H 0.105 0.895 25 H 0.073 0.927 26 H 0.081 0.919 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.106 0.894 30 H 0.067 0.933 31 H 0.118 0.882 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -9.185 -4.085 -7.879 12.772 hybrid contribution 0.848 0.729 0.607 1.273 sum -8.336 -3.357 -7.272 11.560 Atomic orbital electron populations 1.21787 0.93754 1.02331 1.01855 1.21062 0.96666 0.95591 0.97184 1.22100 1.01598 0.96391 1.00819 1.21902 0.92363 1.01639 0.98646 1.22370 0.95854 0.89418 0.91157 0.88634 1.22676 0.94288 0.95326 0.86701 1.43113 1.43847 1.07728 1.26825 1.19423 1.21233 0.89050 1.15176 0.90919 1.25935 0.99214 0.98123 0.97382 1.69960 1.36302 1.18526 1.29391 0.84837 0.77751 0.77440 0.78033 1.20207 1.19363 1.19624 1.16317 0.83172 0.83109 0.84043 1.90646 1.58513 1.74577 1.32704 1.47115 1.49219 1.11828 1.30173 1.21396 1.01529 0.77250 1.01608 0.93654 0.91575 0.91476 0.89492 0.92669 0.91932 0.94575 0.93928 0.89425 0.93268 0.88185 0.91744 0.92341 0.92783 0.88239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 9.19 71.98 0.66 -2.02 16 2 C -0.09 -2.04 2.90 -10.79 -0.03 -2.07 16 3 C -0.15 -4.40 7.61 71.98 0.55 -3.85 16 4 C -0.11 -3.06 4.47 30.59 0.14 -2.92 16 5 C 0.12 4.17 3.40 45.26 0.15 4.32 16 6 H 0.10 2.95 8.09 -2.39 -0.02 2.93 16 7 C 0.13 6.13 3.30 86.64 0.29 6.42 16 8 N -0.49 -27.79 3.07 -651.05 -2.00 -29.79 16 9 C -0.32 -19.32 9.93 84.01 0.83 -18.48 16 10 H 0.07 4.64 7.67 -2.91 -0.02 4.62 16 11 C -0.01 -0.34 5.46 84.90 0.46 0.12 16 12 N -0.90 -47.62 10.44 21.65 0.23 -47.40 16 13 Si 1.00 43.64 29.56 68.60 2.03 45.66 16 14 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 15 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 16 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 17 C 0.63 34.88 8.24 179.57 1.48 36.35 16 18 O -0.68 -42.52 16.95 -3.99 -0.07 -42.59 16 19 N -0.64 -26.90 3.08 -839.33 -2.59 -29.49 16 20 C 0.12 3.85 10.94 127.77 1.40 5.25 16 21 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 22 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 23 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 24 H 0.09 1.77 8.11 -2.39 -0.02 1.75 16 25 H 0.05 1.86 5.37 -2.39 -0.01 1.84 16 26 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.04 1.19 7.53 -2.38 -0.02 1.17 16 28 H 0.04 1.45 8.00 -2.39 -0.02 1.43 16 29 H 0.09 2.04 7.02 -2.39 -0.02 2.03 16 30 H 0.05 2.37 7.55 -2.39 -0.02 2.35 16 31 H 0.10 4.74 4.15 -2.39 -0.01 4.73 16 32 H 0.27 13.42 8.31 -92.71 -0.77 12.65 16 33 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.05 1.87 7.81 -2.39 -0.02 1.85 16 35 H 0.10 2.24 7.02 -2.39 -0.02 2.22 16 Total: -1.00 -72.10 277.19 4.59 -67.52 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: 1.06 Total: 12.97 kcal Atomic # 6 Polarization: 17.19 SS G_CDS: 5.93 Total: 23.12 kcal Atomic # 7 Polarization: -102.32 SS G_CDS: -4.36 Total: -106.68 kcal Atomic # 8 Polarization: -42.52 SS G_CDS: -0.07 Total: -42.59 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.66 kcal Total: -72.10 4.59 -67.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259478711.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.740 kcal (2) G-P(sol) polarization free energy of solvation -72.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds