Wall clock time and date at job start Mon Mar 30 2020 03:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.33951 * 125.41094 * 2 1 4 4 O 1.21583 * 123.04099 * 0.02562 * 3 2 1 5 5 N 1.33949 * 113.91444 * 179.97438 * 3 2 1 6 6 C 1.37192 * 125.40731 * 179.97438 * 5 3 2 7 7 H 1.07994 * 120.00427 * 7.10964 * 6 5 3 8 8 C 1.38880 * 119.99729 * 186.83553 * 6 5 3 9 9 N 1.31472 * 119.99993 * 351.69414 * 8 6 5 10 10 Si 1.86799 * 119.99886 * 171.68771 * 8 6 5 11 11 H 1.48500 * 109.46878 * 90.00604 * 10 8 6 12 12 H 1.48505 * 109.47277 * 210.00089 * 10 8 6 13 13 H 1.48500 * 109.47170 * 330.00116 * 10 8 6 14 14 C 1.47056 * 109.18013 * 0.25714 * 5 3 2 15 15 C 1.47053 * 125.40889 * 179.97438 * 2 1 3 16 16 H 1.09000 * 110.54961 * 298.59952 * 15 2 1 17 17 C 1.52996 * 110.54849 * 61.40859 * 15 2 1 18 18 C 1.53005 * 109.47135 * 61.50902 * 17 15 2 19 19 C 1.52993 * 109.47305 * 181.51175 * 17 15 2 20 20 C 1.53001 * 109.47257 * 301.51010 * 17 15 2 21 21 H 1.09005 * 109.46828 * 326.16394 * 1 2 3 22 22 H 1.08999 * 109.46885 * 86.15873 * 1 2 3 23 23 H 1.08994 * 109.47315 * 206.15928 * 1 2 3 24 24 H 0.97004 * 119.99799 * 179.97438 * 9 8 6 25 25 H 1.09002 * 110.54337 * 118.32946 * 14 5 3 26 26 H 1.08997 * 110.54681 * 241.14253 * 14 5 3 27 27 H 1.08998 * 109.46900 * 60.00330 * 18 17 15 28 28 H 1.08999 * 109.47132 * 179.97438 * 18 17 15 29 29 H 1.09000 * 109.47121 * 300.00219 * 18 17 15 30 30 H 1.09003 * 109.47793 * 60.00098 * 19 17 15 31 31 H 1.09008 * 109.47388 * 179.97438 * 19 17 15 32 32 H 1.08998 * 109.47188 * 299.99950 * 19 17 15 33 33 H 1.09009 * 109.47135 * 67.60614 * 20 17 15 34 34 H 1.08998 * 109.47419 * 187.60594 * 20 17 15 35 35 H 1.08994 * 109.47529 * 307.61117 * 20 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2412 1.0917 0.0000 4 8 1.7946 2.2226 0.0005 5 7 3.5538 0.8248 0.0005 6 6 4.5556 1.7621 0.0002 7 1 4.3158 2.8088 0.1151 8 6 5.8785 1.3643 -0.1423 9 7 6.1877 0.0868 -0.1129 10 14 7.2187 2.6445 -0.3761 11 1 7.7455 3.0573 0.9495 12 1 8.3195 2.0662 -1.1879 13 1 6.6565 3.8276 -1.0757 14 6 3.7504 -0.6326 -0.0052 15 6 2.3170 -1.1985 0.0005 16 1 2.1405 -1.7931 0.8969 17 6 2.0694 -2.0340 -1.2570 18 6 2.4266 -1.2097 -2.4955 19 6 2.9393 -3.2918 -1.2132 20 6 0.5945 -2.4360 -1.3200 21 1 -0.3633 0.8537 0.5723 22 1 -0.3633 0.0688 -1.0254 23 1 -0.3633 -0.9223 0.4530 24 1 7.1117 -0.1910 -0.2128 25 1 4.2827 -0.9432 -0.9043 26 1 4.2886 -0.9495 0.8880 27 1 3.4774 -0.9234 -2.4507 28 1 2.2506 -1.8051 -3.3914 29 1 1.8068 -0.3136 -2.5267 30 1 2.6849 -3.8792 -0.3309 31 1 2.7626 -3.8873 -2.1089 32 1 3.9901 -3.0055 -1.1683 33 1 -0.0170 -1.5492 -1.4870 34 1 0.4444 -3.1402 -2.1383 35 1 0.3052 -2.9049 -0.3796 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259508066.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:38 Heat of formation + Delta-G solvation = -27.272360 kcal Electronic energy + Delta-G solvation = -17101.426063 eV Core-core repulsion = 14520.559806 eV Total energy + Delta-G solvation = -2580.866257 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.09577 -38.43355 -36.65123 -35.15672 -33.55692 -30.33306 -28.20915 -27.76485 -27.52490 -26.55791 -23.63092 -21.07910 -19.94482 -19.22724 -17.50583 -17.14247 -16.83285 -16.09164 -15.46920 -15.19147 -15.03931 -14.84700 -14.40273 -13.98312 -13.60558 -13.34226 -13.24268 -12.88375 -12.83916 -12.74841 -12.66399 -12.38302 -12.22525 -12.13345 -11.79753 -11.49252 -11.31087 -10.99696 -10.79412 -9.95371 -9.30100 -8.31198 -5.84177 1.39504 1.41072 1.53343 2.03361 2.35483 2.42811 3.19169 3.55351 3.72812 3.85054 3.97285 4.26843 4.33626 4.49333 4.59052 4.74058 4.82030 4.84513 4.87819 4.95452 5.07017 5.08315 5.12273 5.18810 5.35068 5.36185 5.41711 5.49040 5.55121 5.70522 6.06067 6.31592 6.70742 7.25485 7.48987 8.23402 8.77107 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.032332 B = 0.010540 C = 0.008649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.803483 B = 2655.792392 C = 3236.494818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.126 3.874 2 N -0.635 5.635 3 C 0.637 3.363 4 O -0.677 6.677 5 N -0.488 5.488 6 C -0.320 4.320 7 H 0.073 0.927 8 C -0.006 4.006 9 N -0.906 5.906 10 Si 0.993 3.007 11 H -0.271 1.271 12 H -0.268 1.268 13 H -0.277 1.277 14 C 0.142 3.858 15 C 0.125 3.875 16 H 0.095 0.905 17 C -0.067 4.067 18 C -0.133 4.133 19 C -0.135 4.135 20 C -0.144 4.144 21 H 0.047 0.953 22 H 0.055 0.945 23 H 0.105 0.895 24 H 0.273 0.727 25 H 0.080 0.920 26 H 0.052 0.948 27 H 0.032 0.968 28 H 0.073 0.927 29 H 0.028 0.972 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.043 0.957 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.566 -10.918 -2.281 12.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.015 4.015 2 N -0.374 5.374 3 C 0.339 3.661 4 O -0.565 6.565 5 N -0.211 5.211 6 C -0.447 4.447 7 H 0.091 0.909 8 C -0.206 4.206 9 N -0.546 5.546 10 Si 0.816 3.184 11 H -0.196 1.196 12 H -0.192 1.192 13 H -0.202 1.202 14 C 0.019 3.981 15 C 0.021 3.979 16 H 0.113 0.887 17 C -0.068 4.068 18 C -0.190 4.190 19 C -0.192 4.192 20 C -0.200 4.200 21 H 0.066 0.934 22 H 0.073 0.927 23 H 0.124 0.876 24 H 0.082 0.918 25 H 0.098 0.902 26 H 0.071 0.929 27 H 0.051 0.949 28 H 0.092 0.908 29 H 0.047 0.953 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.062 0.938 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.628 -10.402 -2.280 12.543 hybrid contribution 0.922 0.984 0.020 1.349 sum -5.705 -9.418 -2.260 11.241 Atomic orbital electron populations 1.21552 0.75679 1.02980 1.01267 1.46960 1.06159 1.04926 1.79328 1.16217 0.82797 0.84625 0.82450 1.90650 1.77414 1.23581 1.64873 1.42954 1.02939 1.06826 1.68408 1.19362 0.85870 0.88768 1.50718 0.90857 1.25922 0.99146 0.99221 0.96310 1.69987 1.19951 1.15001 1.49672 0.84945 0.77221 0.77622 0.78583 1.19626 1.19235 1.20186 1.22179 0.93591 0.79761 1.02583 1.22400 0.88887 0.87168 0.99463 0.88706 1.20817 0.98179 0.95101 0.92737 1.21798 1.00054 0.99030 0.98150 1.21806 0.98703 0.95551 1.03160 1.22114 0.93105 1.01859 1.02961 0.93406 0.92681 0.87639 0.91761 0.90208 0.92945 0.94873 0.90815 0.95321 0.90896 0.90754 0.93796 0.92105 0.91099 0.91050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 3.90 8.87 127.77 1.13 5.03 16 2 N -0.64 -25.96 2.45 -839.31 -2.06 -28.02 16 3 C 0.64 34.65 8.24 179.57 1.48 36.13 16 4 O -0.68 -42.22 17.07 -3.98 -0.07 -42.29 16 5 N -0.49 -27.32 3.07 -651.04 -2.00 -29.32 16 6 C -0.32 -19.17 9.91 84.01 0.83 -18.34 16 7 H 0.07 4.66 7.69 -2.91 -0.02 4.63 16 8 C -0.01 -0.33 5.47 84.90 0.46 0.14 16 9 N -0.91 -48.57 10.41 21.65 0.23 -48.34 16 10 Si 0.99 43.83 29.56 68.60 2.03 45.85 16 11 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 12 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 13 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 14 C 0.14 6.60 4.24 86.65 0.37 6.96 16 15 C 0.13 4.46 2.83 45.26 0.13 4.59 16 16 H 0.10 2.94 8.14 -2.39 -0.02 2.92 16 17 C -0.07 -1.89 0.60 -52.18 -0.03 -1.92 16 18 C -0.13 -4.45 7.98 71.98 0.57 -3.87 16 19 C -0.13 -3.22 8.30 71.98 0.60 -2.62 16 20 C -0.14 -3.02 7.14 71.98 0.51 -2.50 16 21 H 0.05 1.61 8.00 -2.38 -0.02 1.60 16 22 H 0.05 1.58 6.83 -2.39 -0.02 1.57 16 23 H 0.11 2.32 7.16 -2.39 -0.02 2.30 16 24 H 0.27 13.65 8.31 -92.71 -0.77 12.88 16 25 H 0.08 3.84 4.35 -2.39 -0.01 3.83 16 26 H 0.05 2.58 7.64 -2.39 -0.02 2.56 16 27 H 0.03 1.31 6.09 -2.39 -0.01 1.30 16 28 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.03 1.07 7.70 -2.39 -0.02 1.06 16 30 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 32 H 0.04 1.25 6.99 -2.39 -0.02 1.23 16 33 H 0.06 1.36 4.81 -2.38 -0.01 1.35 16 34 H 0.07 1.24 8.13 -2.39 -0.02 1.22 16 35 H 0.07 1.25 7.94 -2.39 -0.02 1.23 16 Total: -1.00 -72.16 271.71 5.25 -66.90 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: 1.07 Total: 11.62 kcal Atomic # 6 Polarization: 17.54 SS G_CDS: 6.06 Total: 23.60 kcal Atomic # 7 Polarization: -101.84 SS G_CDS: -3.84 Total: -105.68 kcal Atomic # 8 Polarization: -42.22 SS G_CDS: -0.07 Total: -42.29 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.85 kcal Total: -72.16 5.25 -66.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259508066.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.628 kcal (2) G-P(sol) polarization free energy of solvation -72.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds