Wall clock time and date at job start Mon Mar 30 2020 03:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47108 * 2 1 4 4 C 1.50693 * 109.47489 * 120.00427 * 2 1 3 5 5 O 1.21284 * 120.00310 * 240.00286 * 4 2 1 6 6 N 1.34780 * 120.00205 * 59.99757 * 4 2 1 7 7 C 1.47579 * 134.49439 * 180.02562 * 6 4 2 8 8 C 1.53950 * 86.11621 * 204.63969 * 7 6 4 9 9 N 1.46897 * 113.74056 * 221.93947 * 8 7 6 10 10 C 1.46902 * 111.00081 * 203.07238 * 9 8 7 11 11 C 1.50698 * 109.47018 * 180.02562 * 10 9 8 12 12 H 1.08003 * 120.00305 * 359.97438 * 11 10 9 13 13 C 1.37884 * 119.99768 * 180.02562 * 11 10 9 14 14 N 1.31512 * 119.99675 * 179.97438 * 13 11 10 15 15 Si 1.86801 * 119.99976 * 0.02562 * 13 11 10 16 16 H 1.48497 * 109.47208 * 90.00157 * 15 13 11 17 17 H 1.48500 * 109.46820 * 210.00021 * 15 13 11 18 18 H 1.48504 * 109.47157 * 329.99852 * 15 13 11 19 19 C 1.47925 * 134.49772 * 0.02562 * 6 4 2 20 20 H 1.09005 * 109.47605 * 59.99544 * 1 2 3 21 21 H 1.09002 * 109.47356 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.47102 * 299.99596 * 1 2 3 23 23 H 1.09003 * 109.46712 * 240.00642 * 2 1 3 24 24 H 1.09001 * 109.47213 * 180.02562 * 3 2 1 25 25 H 1.08997 * 109.47519 * 300.00664 * 3 2 1 26 26 H 1.09003 * 109.46810 * 60.00702 * 3 2 1 27 27 H 1.09003 * 113.77049 * 90.34034 * 7 6 4 28 28 H 1.08993 * 113.77081 * 318.93795 * 7 6 4 29 29 H 1.09002 * 113.74276 * 90.74001 * 8 7 6 30 30 H 1.00901 * 111.00596 * 327.03087 * 9 8 7 31 31 H 1.08993 * 109.47235 * 300.00036 * 10 9 8 32 32 H 1.08995 * 109.46951 * 60.00403 * 10 9 8 33 33 H 0.97007 * 119.99618 * 179.97438 * 14 13 11 34 34 H 1.09006 * 113.87423 * 41.10256 * 19 6 4 35 35 H 1.08997 * 113.77410 * 269.60428 * 19 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2303 5 8 2.7296 -0.1211 2.0287 6 7 1.7068 -2.0008 1.4436 7 6 2.0087 -2.9821 2.5038 8 6 1.7570 -4.0594 1.4332 9 7 0.9849 -5.2097 1.9218 10 6 1.2309 -6.3984 1.0945 11 6 0.4233 -7.5551 1.6246 12 1 -0.2091 -7.4207 2.4898 13 6 0.4926 -8.7853 1.0057 14 7 -0.2117 -9.7948 1.4686 15 14 1.5881 -9.0182 -0.4894 16 1 2.9422 -9.4405 -0.0499 17 1 1.0062 -10.0615 -1.3716 18 1 1.6865 -7.7379 -1.2353 19 6 0.9034 -3.0024 0.7091 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8932 -0.5138 -0.8901 24 1 3.1300 1.4426 -0.0005 25 1 1.6766 1.9564 -0.8899 26 1 1.6767 1.9563 0.8901 27 1 1.2806 -2.9904 3.3150 28 1 3.0395 -2.9452 2.8560 29 1 2.6527 -4.3509 0.8848 30 1 1.1886 -5.3960 2.8923 31 1 0.9371 -6.1921 0.0654 32 1 2.2909 -6.6501 1.1263 33 1 -0.1633 -10.6602 1.0329 34 1 1.0524 -2.9819 -0.3705 35 1 -0.1485 -3.0167 0.9942 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260130780.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:16 Heat of formation + Delta-G solvation = -8.624008 kcal Electronic energy + Delta-G solvation = -15529.691885 eV Core-core repulsion = 12949.634281 eV Total energy + Delta-G solvation = -2580.057604 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.29888 -38.06343 -34.59037 -34.38180 -32.22000 -29.16958 -27.31181 -26.47510 -26.08590 -23.08936 -21.34713 -20.39583 -18.75475 -17.16409 -16.86537 -15.96518 -15.87570 -15.01905 -14.75763 -14.02854 -13.68590 -13.22469 -13.10729 -12.73225 -12.63583 -12.45191 -12.34663 -12.21214 -11.97171 -11.63717 -11.28027 -11.21122 -10.89303 -10.70588 -10.45131 -9.92632 -9.61593 -9.35599 -8.68149 -8.61937 -7.74015 -6.12753 -4.11772 2.64196 2.86624 3.23262 3.31555 3.32303 4.30780 4.35352 4.62165 4.69812 4.80116 4.88337 5.08711 5.19817 5.21431 5.42259 5.45235 5.55683 5.57846 5.62431 5.67089 5.68483 5.74847 5.94112 5.99552 6.09502 6.17080 6.66369 6.88055 7.48352 7.70437 7.79830 8.13376 8.18407 8.54119 8.94782 9.48378 11.00381 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.049732 B = 0.005033 C = 0.004912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.883191 B = 5561.962372 C = 5699.166744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.110 4.110 3 C -0.131 4.131 4 C 0.538 3.462 5 O -0.551 6.551 6 N -0.642 5.642 7 C 0.103 3.897 8 C 0.048 3.952 9 N -0.665 5.665 10 C 0.163 3.837 11 C -0.520 4.520 12 H 0.080 0.920 13 C 0.070 3.930 14 N -0.898 5.898 15 Si 0.878 3.122 16 H -0.277 1.277 17 H -0.285 1.285 18 H -0.267 1.267 19 C 0.111 3.889 20 H 0.066 0.934 21 H 0.065 0.935 22 H 0.059 0.941 23 H 0.094 0.906 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.091 0.909 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.342 0.658 31 H 0.028 0.972 32 H -0.017 1.017 33 H 0.265 0.735 34 H 0.077 0.923 35 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.913 16.801 -4.367 17.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.131 4.131 3 C -0.189 4.189 4 C 0.328 3.672 5 O -0.429 6.429 6 N -0.378 5.378 7 C -0.020 4.020 8 C -0.064 4.064 9 N -0.297 5.297 10 C 0.035 3.965 11 C -0.558 4.558 12 H 0.098 0.902 13 C -0.132 4.132 14 N -0.537 5.537 15 Si 0.705 3.295 16 H -0.203 1.203 17 H -0.211 1.211 18 H -0.192 1.192 19 C -0.012 4.012 20 H 0.085 0.915 21 H 0.084 0.916 22 H 0.078 0.922 23 H 0.113 0.887 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.109 0.891 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.161 0.839 31 H 0.046 0.954 32 H 0.000 1.000 33 H 0.074 0.926 34 H 0.095 0.905 35 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.722 17.296 -4.346 18.041 hybrid contribution 1.367 -0.633 -0.571 1.611 sum 4.089 16.663 -4.917 17.848 Atomic orbital electron populations 1.21818 0.92837 1.03038 1.02638 1.21229 0.97742 0.97576 0.96560 1.21609 1.01671 0.93629 1.01958 1.20360 0.79852 0.79384 0.87622 1.90675 1.39198 1.64930 1.48072 1.49982 1.51786 1.09641 1.26398 1.23446 1.01699 0.84230 0.92611 1.23519 0.95459 0.91287 0.96172 1.60582 1.56434 1.05471 1.07189 1.20088 0.94322 0.88044 0.94002 1.21033 1.26740 0.92449 1.15581 0.90196 1.24906 0.95435 0.95806 0.97091 1.69896 1.41026 1.01763 1.40990 0.86824 0.80976 0.78246 0.83418 1.20323 1.21106 1.19166 1.23525 0.97052 0.83356 0.97282 0.91496 0.91601 0.92215 0.88746 0.92084 0.92100 0.92014 0.89086 0.90482 0.90579 0.83861 0.95363 0.99971 0.92552 0.90483 0.88417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.07 37.15 0.34 -1.00 16 2 C -0.11 -1.17 3.09 -91.78 -0.28 -1.46 16 3 C -0.13 -1.30 8.48 37.16 0.32 -0.99 16 4 C 0.54 7.79 7.39 -10.99 -0.08 7.71 16 5 O -0.55 -9.90 16.71 5.55 0.09 -9.80 16 6 N -0.64 -8.88 3.57 -178.22 -0.64 -9.51 16 7 C 0.10 1.41 8.43 -2.97 -0.03 1.38 16 8 C 0.05 0.71 4.30 -69.91 -0.30 0.41 16 9 N -0.67 -12.24 6.55 -109.67 -0.72 -12.96 16 10 C 0.16 3.67 4.36 -4.98 -0.02 3.65 16 11 C -0.52 -14.18 9.87 -34.44 -0.34 -14.52 16 12 H 0.08 2.37 8.06 -52.48 -0.42 1.94 16 13 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 14 N -0.90 -26.87 13.96 55.43 0.77 -26.10 16 15 Si 0.88 20.79 27.47 -169.99 -4.67 16.12 16 16 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 17 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 18 H -0.27 -6.03 6.54 56.52 0.37 -5.66 16 19 C 0.11 1.44 6.71 -2.77 -0.02 1.43 16 20 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 21 H 0.06 0.62 6.14 -51.93 -0.32 0.30 16 22 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 24 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.66 8.10 -51.93 -0.42 0.24 16 27 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 29 H 0.08 1.16 7.89 -51.93 -0.41 0.75 16 30 H 0.34 6.07 8.57 -39.29 -0.34 5.74 16 31 H 0.03 0.65 7.20 -51.93 -0.37 0.27 16 32 H -0.02 -0.39 7.56 -51.93 -0.39 -0.78 16 33 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 34 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.10 1.27 7.97 -51.93 -0.41 0.85 16 LS Contribution 291.07 15.07 4.39 4.39 Total: -1.00 -31.33 291.07 -6.92 -38.26 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -5.64 Total: 1.14 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: -0.52 Total: -1.53 kcal Atomic # 7 Polarization: -47.99 SS G_CDS: -0.58 Total: -48.57 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.09 Total: -9.80 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -4.67 Total: 16.12 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -31.33 -6.92 -38.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260130780.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.633 kcal (2) G-P(sol) polarization free energy of solvation -31.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds