Wall clock time and date at job start Mon Mar 30 2020 03:15:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52993 * 1
3 3 C 1.52999 * 109.47449 * 2 1
4 4 C 1.53003 * 109.47015 * 239.99893 * 2 1 3
5 5 C 1.52998 * 109.47450 * 120.00197 * 2 1 3
6 6 H 1.09002 * 110.84393 * 182.26648 * 5 2 1
7 7 C 1.54791 * 110.94780 * 306.04066 * 5 2 1
8 8 C 1.51811 * 102.23463 * 142.13962 * 7 5 2
9 9 O 1.21288 * 126.03583 * 165.15562 * 8 7 5
10 10 N 1.34587 * 107.91927 * 345.17917 * 8 7 5
11 11 C 1.46505 * 123.52142 * 178.66982 * 10 8 7
12 12 C 1.50699 * 109.47175 * 274.70146 * 11 10 8
13 13 H 1.07997 * 119.99968 * 0.02562 * 12 11 10
14 14 C 1.37878 * 119.99954 * 179.97438 * 12 11 10
15 15 N 1.31506 * 120.00216 * 0.02562 * 14 12 11
16 16 Si 1.86804 * 119.99626 * 180.02562 * 14 12 11
17 17 H 1.48492 * 109.47337 * 0.02562 * 16 14 12
18 18 H 1.48506 * 109.46549 * 120.00431 * 16 14 12
19 19 H 1.48499 * 109.47088 * 240.00121 * 16 14 12
20 20 N 1.36331 * 112.95276 * 358.40443 * 10 8 7
21 21 H 1.08997 * 109.46870 * 306.41779 * 1 2 3
22 22 H 1.09001 * 109.47493 * 66.41556 * 1 2 3
23 23 H 1.09002 * 109.47202 * 186.42096 * 1 2 3
24 24 H 1.09004 * 109.47351 * 180.02562 * 3 2 1
25 25 H 1.08999 * 109.46654 * 300.00041 * 3 2 1
26 26 H 1.08991 * 109.47221 * 60.00139 * 3 2 1
27 27 H 1.09003 * 109.46837 * 300.00363 * 4 2 1
28 28 H 1.09002 * 109.46906 * 60.00178 * 4 2 1
29 29 H 1.09004 * 109.47407 * 179.97438 * 4 2 1
30 30 H 1.08996 * 110.85258 * 260.32940 * 7 5 2
31 31 H 1.09009 * 110.85146 * 23.75552 * 7 5 2
32 32 H 1.08997 * 109.47379 * 34.70761 * 11 10 8
33 33 H 1.09001 * 109.46870 * 154.70736 * 11 10 8
34 34 H 0.96996 * 120.00131 * 179.97438 * 15 14 12
35 35 H 1.00906 * 111.00003 * 256.74481 * 20 10 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0399 -0.7213 -1.2493
5 6 2.0400 -0.7213 1.2492
6 1 3.1290 -0.6995 1.2921
7 6 1.4226 -0.1117 2.5311
8 6 1.1972 -1.3395 3.3949
9 8 0.9646 -1.3416 4.5853
10 7 1.3014 -2.4253 2.6065
11 6 1.1707 -3.7987 3.0994
12 6 2.5020 -4.2738 3.6219
13 1 3.3596 -3.6181 3.5902
14 6 2.6249 -5.5451 4.1411
15 7 1.5806 -6.3433 4.1801
16 14 4.2751 -6.1336 4.7893
17 1 5.2820 -5.0535 4.6333
18 1 4.1454 -6.4852 6.2264
19 1 4.7093 -7.3300 4.0243
20 7 1.5356 -2.1133 1.3002
21 1 -0.3633 0.6101 0.8270
22 1 -0.3634 0.4112 -0.9418
23 1 -0.3634 -1.0212 0.1149
24 1 3.1300 1.4424 -0.0005
25 1 1.6767 1.9562 -0.8900
26 1 1.6768 1.9563 0.8899
27 1 1.6765 -1.7490 -1.2492
28 1 1.6766 -0.2074 -2.1392
29 1 3.1300 -0.7209 -1.2496
30 1 2.1205 0.5759 3.0087
31 1 0.4798 0.3880 2.3079
32 1 0.4339 -3.8281 3.9021
33 1 0.8473 -4.4476 2.2855
34 1 1.6671 -7.2378 4.5451
35 1 0.6970 -2.2144 0.7482
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260788488.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:15:12
Heat of formation + Delta-G solvation = -10.615584 kcal
Electronic energy + Delta-G solvation = -16354.429566 eV
Core-core repulsion = 13774.285600 eV
Total energy + Delta-G solvation = -2580.143965 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 226.142 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-40.59102 -37.44703 -35.55740 -33.08519 -30.87164 -29.02539 -27.50430 -26.97889
-26.77877 -23.43902 -22.37756 -19.34523 -18.82192 -17.10372 -16.18763 -15.95335
-14.93302 -14.49760 -14.36850 -14.12109 -13.78115 -13.63954 -12.96688 -12.91094
-12.27493 -12.24172 -11.97429 -11.79402 -11.48849 -11.31357 -11.17599 -10.81490
-10.73221 -10.68317 -10.65871 -10.14739 -9.87021 -9.39853 -8.75400 -8.43131
-7.27651 -6.03139 -4.06823 3.26120 3.33092 3.39960 3.44762 3.56797
4.43217 4.46847 4.53505 4.72157 4.90611 5.06674 5.18278 5.27263
5.31567 5.44635 5.54399 5.56159 5.69749 5.80017 5.84368 5.92295
5.97905 6.01781 6.17275 6.27637 6.34497 6.92592 7.15241 7.34502
7.69642 7.94221 8.21354 8.62075 8.89176 9.11095 9.57646 11.04891
Molecular weight = 226.14amu
Principal moments of inertia in cm(-1)
A = 0.037154 B = 0.007203 C = 0.006853
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 753.438358 B = 3886.603887 C = 4084.588922
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C -0.068 4.068
3 C -0.139 4.139
4 C -0.139 4.139
5 C 0.077 3.923
6 H 0.103 0.897
7 C -0.193 4.193
8 C 0.491 3.509
9 O -0.533 6.533
10 N -0.447 5.447
11 C 0.269 3.731
12 C -0.518 4.518
13 H 0.061 0.939
14 C 0.059 3.941
15 N -0.898 5.898
16 Si 0.902 3.098
17 H -0.273 1.273
18 H -0.283 1.283
19 H -0.283 1.283
20 N -0.435 5.435
21 H 0.060 0.940
22 H 0.062 0.938
23 H 0.058 0.942
24 H 0.058 0.942
25 H 0.057 0.943
26 H 0.057 0.943
27 H 0.065 0.935
28 H 0.053 0.947
29 H 0.058 0.942
30 H 0.100 0.900
31 H 0.101 0.899
32 H 0.043 0.957
33 H 0.041 0.959
34 H 0.263 0.737
35 H 0.324 0.676
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.890 13.132 -11.321 17.361
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.211 4.211
2 C -0.069 4.069
3 C -0.197 4.197
4 C -0.196 4.196
5 C -0.033 4.033
6 H 0.121 0.879
7 C -0.235 4.235
8 C 0.276 3.724
9 O -0.408 6.408
10 N -0.269 5.269
11 C 0.151 3.849
12 C -0.557 4.557
13 H 0.079 0.921
14 C -0.142 4.142
15 N -0.538 5.538
16 Si 0.730 3.270
17 H -0.198 1.198
18 H -0.209 1.209
19 H -0.209 1.209
20 N -0.161 5.161
21 H 0.078 0.922
22 H 0.081 0.919
23 H 0.076 0.924
24 H 0.077 0.923
25 H 0.076 0.924
26 H 0.076 0.924
27 H 0.084 0.916
28 H 0.072 0.928
29 H 0.078 0.922
30 H 0.118 0.882
31 H 0.119 0.881
32 H 0.061 0.939
33 H 0.059 0.941
34 H 0.073 0.927
35 H 0.146 0.854
Dipole moment (debyes) X Y Z Total
from point charges -0.461 12.494 -10.625 16.407
hybrid contribution 0.120 0.114 0.423 0.454
sum -0.341 12.608 -10.202 16.222
Atomic orbital electron populations
1.22077 0.94676 1.02132 1.02188 1.20683 0.95596 0.95852 0.94785
1.21835 1.01339 0.94602 1.01902 1.21825 1.01452 1.00761 0.95555
1.22960 1.00913 0.86470 0.92912 0.87898 1.23205 1.03726 0.98771
0.97770 1.21079 0.77970 0.85608 0.87772 1.90682 1.50297 1.86060
1.13770 1.48321 1.68798 1.08771 1.01048 1.19316 0.97976 0.72946
0.94628 1.21433 0.95531 0.98826 1.39932 0.92094 1.24928 0.97142
0.96419 0.95759 1.69930 1.29327 1.08249 1.46291 0.86374 0.83615
0.78526 0.78516 1.19765 1.20922 1.20909 1.62985 1.32929 1.22871
0.97315 0.92159 0.91925 0.92354 0.92251 0.92373 0.92384 0.91605
0.92843 0.92246 0.88172 0.88055 0.93894 0.94125 0.92731 0.85370
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.49 7.87 37.15 0.29 -1.20 16
2 C -0.07 -0.70 0.58 -154.51 -0.09 -0.79 16
3 C -0.14 -1.19 8.32 37.16 0.31 -0.88 16
4 C -0.14 -1.36 8.33 37.16 0.31 -1.06 16
5 C 0.08 1.08 2.95 -66.08 -0.19 0.88 16
6 H 0.10 1.50 8.14 -51.93 -0.42 1.07 16
7 C -0.19 -2.95 5.61 -26.39 -0.15 -3.10 16
8 C 0.49 10.84 8.16 -10.52 -0.09 10.75 16
9 O -0.53 -14.03 17.68 5.55 0.10 -13.93 16
10 N -0.45 -10.00 3.33 -61.11 -0.20 -10.20 16
11 C 0.27 7.21 5.82 -5.19 -0.03 7.18 16
12 C -0.52 -15.18 9.38 -34.44 -0.32 -15.51 16
13 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16
14 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16
15 N -0.90 -26.94 13.29 55.43 0.74 -26.21 16
16 Si 0.90 22.38 29.54 -169.99 -5.02 17.36 16
17 H -0.27 -6.73 7.11 56.52 0.40 -6.32 16
18 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16
19 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16
20 N -0.43 -7.70 7.13 -3.16 -0.02 -7.72 16
21 H 0.06 0.58 6.22 -51.93 -0.32 0.26 16
22 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16
23 H 0.06 0.62 6.08 -51.93 -0.32 0.30 16
24 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16
25 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16
26 H 0.06 0.49 7.50 -51.93 -0.39 0.10 16
27 H 0.06 0.72 7.46 -51.93 -0.39 0.33 16
28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16
29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16
30 H 0.10 1.41 8.14 -51.93 -0.42 0.98 16
31 H 0.10 1.33 5.65 -51.92 -0.29 1.04 16
32 H 0.04 1.26 8.01 -51.93 -0.42 0.84 16
33 H 0.04 1.10 8.14 -51.93 -0.42 0.67 16
34 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16
35 H 0.32 5.07 6.07 -181.54 -1.10 3.97 16
LS Contribution 283.00 15.07 4.26 4.26
Total: -1.00 -33.08 283.00 -6.36 -39.44
By element:
Atomic # 1 Polarization: 5.24 SS G_CDS: -6.15 Total: -0.92 kcal
Atomic # 6 Polarization: -2.03 SS G_CDS: -0.06 Total: -2.09 kcal
Atomic # 7 Polarization: -44.64 SS G_CDS: 0.51 Total: -44.13 kcal
Atomic # 8 Polarization: -14.03 SS G_CDS: 0.10 Total: -13.93 kcal
Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal
Total LS contribution 4.26 Total: 4.26 kcal
Total: -33.08 -6.36 -39.44 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260788488.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 28.820 kcal
(2) G-P(sol) polarization free energy of solvation -33.078 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.258 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.358 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.436 kcal
(6) G-S(sol) free energy of system = (1) + (5) -10.616 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds