Wall clock time and date at job start Mon Mar 30 2020 03:15:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47449 * 2 1 4 4 C 1.53003 * 109.47015 * 239.99893 * 2 1 3 5 5 C 1.52998 * 109.47450 * 120.00197 * 2 1 3 6 6 H 1.09002 * 110.84393 * 182.26648 * 5 2 1 7 7 C 1.54791 * 110.94780 * 306.04066 * 5 2 1 8 8 C 1.51811 * 102.23463 * 142.13962 * 7 5 2 9 9 O 1.21288 * 126.03583 * 165.15562 * 8 7 5 10 10 N 1.34587 * 107.91927 * 345.17917 * 8 7 5 11 11 C 1.46505 * 123.52142 * 178.66982 * 10 8 7 12 12 C 1.50699 * 109.47175 * 274.70146 * 11 10 8 13 13 H 1.07997 * 119.99968 * 0.02562 * 12 11 10 14 14 C 1.37878 * 119.99954 * 179.97438 * 12 11 10 15 15 N 1.31506 * 120.00216 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 119.99626 * 180.02562 * 14 12 11 17 17 H 1.48492 * 109.47337 * 0.02562 * 16 14 12 18 18 H 1.48506 * 109.46549 * 120.00431 * 16 14 12 19 19 H 1.48499 * 109.47088 * 240.00121 * 16 14 12 20 20 N 1.36331 * 112.95276 * 358.40443 * 10 8 7 21 21 H 1.08997 * 109.46870 * 306.41779 * 1 2 3 22 22 H 1.09001 * 109.47493 * 66.41556 * 1 2 3 23 23 H 1.09002 * 109.47202 * 186.42096 * 1 2 3 24 24 H 1.09004 * 109.47351 * 180.02562 * 3 2 1 25 25 H 1.08999 * 109.46654 * 300.00041 * 3 2 1 26 26 H 1.08991 * 109.47221 * 60.00139 * 3 2 1 27 27 H 1.09003 * 109.46837 * 300.00363 * 4 2 1 28 28 H 1.09002 * 109.46906 * 60.00178 * 4 2 1 29 29 H 1.09004 * 109.47407 * 179.97438 * 4 2 1 30 30 H 1.08996 * 110.85258 * 260.32940 * 7 5 2 31 31 H 1.09009 * 110.85146 * 23.75552 * 7 5 2 32 32 H 1.08997 * 109.47379 * 34.70761 * 11 10 8 33 33 H 1.09001 * 109.46870 * 154.70736 * 11 10 8 34 34 H 0.96996 * 120.00131 * 179.97438 * 15 14 12 35 35 H 1.00906 * 111.00003 * 256.74481 * 20 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0400 -0.7213 1.2492 6 1 3.1290 -0.6995 1.2921 7 6 1.4226 -0.1117 2.5311 8 6 1.1972 -1.3395 3.3949 9 8 0.9646 -1.3416 4.5853 10 7 1.3014 -2.4253 2.6065 11 6 1.1707 -3.7987 3.0994 12 6 2.5020 -4.2738 3.6219 13 1 3.3596 -3.6181 3.5902 14 6 2.6249 -5.5451 4.1411 15 7 1.5806 -6.3433 4.1801 16 14 4.2751 -6.1336 4.7893 17 1 5.2820 -5.0535 4.6333 18 1 4.1454 -6.4852 6.2264 19 1 4.7093 -7.3300 4.0243 20 7 1.5356 -2.1133 1.3002 21 1 -0.3633 0.6101 0.8270 22 1 -0.3634 0.4112 -0.9418 23 1 -0.3634 -1.0212 0.1149 24 1 3.1300 1.4424 -0.0005 25 1 1.6767 1.9562 -0.8900 26 1 1.6768 1.9563 0.8899 27 1 1.6765 -1.7490 -1.2492 28 1 1.6766 -0.2074 -2.1392 29 1 3.1300 -0.7209 -1.2496 30 1 2.1205 0.5759 3.0087 31 1 0.4798 0.3880 2.3079 32 1 0.4339 -3.8281 3.9021 33 1 0.8473 -4.4476 2.2855 34 1 1.6671 -7.2378 4.5451 35 1 0.6970 -2.2144 0.7482 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260788488.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:12 Heat of formation + Delta-G solvation = -10.615584 kcal Electronic energy + Delta-G solvation = -16354.429566 eV Core-core repulsion = 13774.285600 eV Total energy + Delta-G solvation = -2580.143965 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.59102 -37.44703 -35.55740 -33.08519 -30.87164 -29.02539 -27.50430 -26.97889 -26.77877 -23.43902 -22.37756 -19.34523 -18.82192 -17.10372 -16.18763 -15.95335 -14.93302 -14.49760 -14.36850 -14.12109 -13.78115 -13.63954 -12.96688 -12.91094 -12.27493 -12.24172 -11.97429 -11.79402 -11.48849 -11.31357 -11.17599 -10.81490 -10.73221 -10.68317 -10.65871 -10.14739 -9.87021 -9.39853 -8.75400 -8.43131 -7.27651 -6.03139 -4.06823 3.26120 3.33092 3.39960 3.44762 3.56797 4.43217 4.46847 4.53505 4.72157 4.90611 5.06674 5.18278 5.27263 5.31567 5.44635 5.54399 5.56159 5.69749 5.80017 5.84368 5.92295 5.97905 6.01781 6.17275 6.27637 6.34497 6.92592 7.15241 7.34502 7.69642 7.94221 8.21354 8.62075 8.89176 9.11095 9.57646 11.04891 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.037154 B = 0.007203 C = 0.006853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.438358 B = 3886.603887 C = 4084.588922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.068 4.068 3 C -0.139 4.139 4 C -0.139 4.139 5 C 0.077 3.923 6 H 0.103 0.897 7 C -0.193 4.193 8 C 0.491 3.509 9 O -0.533 6.533 10 N -0.447 5.447 11 C 0.269 3.731 12 C -0.518 4.518 13 H 0.061 0.939 14 C 0.059 3.941 15 N -0.898 5.898 16 Si 0.902 3.098 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.283 1.283 20 N -0.435 5.435 21 H 0.060 0.940 22 H 0.062 0.938 23 H 0.058 0.942 24 H 0.058 0.942 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.065 0.935 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.100 0.900 31 H 0.101 0.899 32 H 0.043 0.957 33 H 0.041 0.959 34 H 0.263 0.737 35 H 0.324 0.676 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.890 13.132 -11.321 17.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.069 4.069 3 C -0.197 4.197 4 C -0.196 4.196 5 C -0.033 4.033 6 H 0.121 0.879 7 C -0.235 4.235 8 C 0.276 3.724 9 O -0.408 6.408 10 N -0.269 5.269 11 C 0.151 3.849 12 C -0.557 4.557 13 H 0.079 0.921 14 C -0.142 4.142 15 N -0.538 5.538 16 Si 0.730 3.270 17 H -0.198 1.198 18 H -0.209 1.209 19 H -0.209 1.209 20 N -0.161 5.161 21 H 0.078 0.922 22 H 0.081 0.919 23 H 0.076 0.924 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.084 0.916 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.118 0.882 31 H 0.119 0.881 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.073 0.927 35 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -0.461 12.494 -10.625 16.407 hybrid contribution 0.120 0.114 0.423 0.454 sum -0.341 12.608 -10.202 16.222 Atomic orbital electron populations 1.22077 0.94676 1.02132 1.02188 1.20683 0.95596 0.95852 0.94785 1.21835 1.01339 0.94602 1.01902 1.21825 1.01452 1.00761 0.95555 1.22960 1.00913 0.86470 0.92912 0.87898 1.23205 1.03726 0.98771 0.97770 1.21079 0.77970 0.85608 0.87772 1.90682 1.50297 1.86060 1.13770 1.48321 1.68798 1.08771 1.01048 1.19316 0.97976 0.72946 0.94628 1.21433 0.95531 0.98826 1.39932 0.92094 1.24928 0.97142 0.96419 0.95759 1.69930 1.29327 1.08249 1.46291 0.86374 0.83615 0.78526 0.78516 1.19765 1.20922 1.20909 1.62985 1.32929 1.22871 0.97315 0.92159 0.91925 0.92354 0.92251 0.92373 0.92384 0.91605 0.92843 0.92246 0.88172 0.88055 0.93894 0.94125 0.92731 0.85370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 7.87 37.15 0.29 -1.20 16 2 C -0.07 -0.70 0.58 -154.51 -0.09 -0.79 16 3 C -0.14 -1.19 8.32 37.16 0.31 -0.88 16 4 C -0.14 -1.36 8.33 37.16 0.31 -1.06 16 5 C 0.08 1.08 2.95 -66.08 -0.19 0.88 16 6 H 0.10 1.50 8.14 -51.93 -0.42 1.07 16 7 C -0.19 -2.95 5.61 -26.39 -0.15 -3.10 16 8 C 0.49 10.84 8.16 -10.52 -0.09 10.75 16 9 O -0.53 -14.03 17.68 5.55 0.10 -13.93 16 10 N -0.45 -10.00 3.33 -61.11 -0.20 -10.20 16 11 C 0.27 7.21 5.82 -5.19 -0.03 7.18 16 12 C -0.52 -15.18 9.38 -34.44 -0.32 -15.51 16 13 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 14 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 15 N -0.90 -26.94 13.29 55.43 0.74 -26.21 16 16 Si 0.90 22.38 29.54 -169.99 -5.02 17.36 16 17 H -0.27 -6.73 7.11 56.52 0.40 -6.32 16 18 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 20 N -0.43 -7.70 7.13 -3.16 -0.02 -7.72 16 21 H 0.06 0.58 6.22 -51.93 -0.32 0.26 16 22 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.06 0.62 6.08 -51.93 -0.32 0.30 16 24 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.49 7.50 -51.93 -0.39 0.10 16 27 H 0.06 0.72 7.46 -51.93 -0.39 0.33 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.10 1.41 8.14 -51.93 -0.42 0.98 16 31 H 0.10 1.33 5.65 -51.92 -0.29 1.04 16 32 H 0.04 1.26 8.01 -51.93 -0.42 0.84 16 33 H 0.04 1.10 8.14 -51.93 -0.42 0.67 16 34 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 35 H 0.32 5.07 6.07 -181.54 -1.10 3.97 16 LS Contribution 283.00 15.07 4.26 4.26 Total: -1.00 -33.08 283.00 -6.36 -39.44 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -6.15 Total: -0.92 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: -0.06 Total: -2.09 kcal Atomic # 7 Polarization: -44.64 SS G_CDS: 0.51 Total: -44.13 kcal Atomic # 8 Polarization: -14.03 SS G_CDS: 0.10 Total: -13.93 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -33.08 -6.36 -39.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260788488.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.820 kcal (2) G-P(sol) polarization free energy of solvation -33.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds