Wall clock time and date at job start Mon Mar 30 2020 03:15:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47449 * 2 1 4 4 C 1.53003 * 109.47015 * 239.99893 * 2 1 3 5 5 C 1.52998 * 109.47450 * 120.00197 * 2 1 3 6 6 H 1.09002 * 110.84393 * 182.26648 * 5 2 1 7 7 C 1.54791 * 110.94780 * 306.04066 * 5 2 1 8 8 C 1.51811 * 102.23463 * 142.13962 * 7 5 2 9 9 O 1.21288 * 126.03583 * 165.15562 * 8 7 5 10 10 N 1.34587 * 107.91927 * 345.17917 * 8 7 5 11 11 C 1.46505 * 123.52142 * 178.66982 * 10 8 7 12 12 C 1.50699 * 109.47175 * 274.70146 * 11 10 8 13 13 H 1.07997 * 119.99968 * 0.02562 * 12 11 10 14 14 C 1.37878 * 119.99954 * 179.97438 * 12 11 10 15 15 N 1.31506 * 120.00216 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 119.99626 * 180.02562 * 14 12 11 17 17 H 1.48492 * 109.47337 * 0.02562 * 16 14 12 18 18 H 1.48506 * 109.46549 * 120.00431 * 16 14 12 19 19 H 1.48499 * 109.47088 * 240.00121 * 16 14 12 20 20 N 1.36331 * 112.95276 * 358.40443 * 10 8 7 21 21 H 1.08997 * 109.46870 * 306.41779 * 1 2 3 22 22 H 1.09001 * 109.47493 * 66.41556 * 1 2 3 23 23 H 1.09002 * 109.47202 * 186.42096 * 1 2 3 24 24 H 1.09004 * 109.47351 * 180.02562 * 3 2 1 25 25 H 1.08999 * 109.46654 * 300.00041 * 3 2 1 26 26 H 1.08991 * 109.47221 * 60.00139 * 3 2 1 27 27 H 1.09003 * 109.46837 * 300.00363 * 4 2 1 28 28 H 1.09002 * 109.46906 * 60.00178 * 4 2 1 29 29 H 1.09004 * 109.47407 * 179.97438 * 4 2 1 30 30 H 1.08996 * 110.85258 * 260.32940 * 7 5 2 31 31 H 1.09009 * 110.85146 * 23.75552 * 7 5 2 32 32 H 1.08997 * 109.47379 * 34.70761 * 11 10 8 33 33 H 1.09001 * 109.46870 * 154.70736 * 11 10 8 34 34 H 0.96996 * 120.00131 * 179.97438 * 15 14 12 35 35 H 1.00906 * 111.00003 * 256.74481 * 20 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0400 -0.7213 1.2492 6 1 3.1290 -0.6995 1.2921 7 6 1.4226 -0.1117 2.5311 8 6 1.1972 -1.3395 3.3949 9 8 0.9646 -1.3416 4.5853 10 7 1.3014 -2.4253 2.6065 11 6 1.1707 -3.7987 3.0994 12 6 2.5020 -4.2738 3.6219 13 1 3.3596 -3.6181 3.5902 14 6 2.6249 -5.5451 4.1411 15 7 1.5806 -6.3433 4.1801 16 14 4.2751 -6.1336 4.7893 17 1 5.2820 -5.0535 4.6333 18 1 4.1454 -6.4852 6.2264 19 1 4.7093 -7.3300 4.0243 20 7 1.5356 -2.1133 1.3002 21 1 -0.3633 0.6101 0.8270 22 1 -0.3634 0.4112 -0.9418 23 1 -0.3634 -1.0212 0.1149 24 1 3.1300 1.4424 -0.0005 25 1 1.6767 1.9562 -0.8900 26 1 1.6768 1.9563 0.8899 27 1 1.6765 -1.7490 -1.2492 28 1 1.6766 -0.2074 -2.1392 29 1 3.1300 -0.7209 -1.2496 30 1 2.1205 0.5759 3.0087 31 1 0.4798 0.3880 2.3079 32 1 0.4339 -3.8281 3.9021 33 1 0.8473 -4.4476 2.2855 34 1 1.6671 -7.2378 4.5451 35 1 0.6970 -2.2144 0.7482 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260788488.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:12 Heat of formation + Delta-G solvation = -33.600912 kcal Electronic energy + Delta-G solvation = -16355.426284 eV Core-core repulsion = 13774.285600 eV Total energy + Delta-G solvation = -2581.140684 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.05717 -38.85769 -37.10711 -35.18464 -32.53241 -30.47609 -28.74654 -28.25119 -27.75894 -25.28076 -23.87368 -21.04081 -19.87427 -18.83662 -18.09902 -17.65671 -16.45590 -16.28856 -15.61605 -15.31419 -15.19898 -14.87482 -14.41419 -14.25938 -13.97270 -13.57051 -13.11576 -12.87651 -12.79777 -12.76908 -12.65174 -12.37414 -12.30948 -12.06810 -11.72391 -11.58880 -11.51905 -11.06034 -10.68860 -10.51912 -9.00528 -8.24996 -6.40567 1.35652 1.37709 1.48868 1.56277 1.90115 2.38242 3.02344 3.18688 3.46392 3.75583 3.79080 3.97579 4.10781 4.32256 4.55828 4.64113 4.79732 4.87939 4.91616 4.96742 4.98996 5.02545 5.11629 5.13732 5.20395 5.36077 5.41692 5.51054 5.57765 5.69353 5.97997 6.14033 6.64975 6.89175 7.22800 7.40378 8.81161 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.037154 B = 0.007203 C = 0.006853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.438358 B = 3886.603887 C = 4084.588922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.058 4.058 3 C -0.137 4.137 4 C -0.138 4.138 5 C 0.081 3.919 6 H 0.100 0.900 7 C -0.172 4.172 8 C 0.472 3.528 9 O -0.588 6.588 10 N -0.454 5.454 11 C 0.282 3.718 12 C -0.541 4.541 13 H 0.049 0.951 14 C 0.009 3.991 15 N -0.927 5.927 16 Si 0.972 3.028 17 H -0.271 1.271 18 H -0.277 1.277 19 H -0.267 1.267 20 N -0.444 5.444 21 H 0.062 0.938 22 H 0.084 0.916 23 H 0.043 0.957 24 H 0.061 0.939 25 H 0.076 0.924 26 H 0.061 0.939 27 H 0.049 0.951 28 H 0.075 0.925 29 H 0.057 0.943 30 H 0.120 0.880 31 H 0.130 0.870 32 H 0.006 0.994 33 H 0.032 0.968 34 H 0.270 0.730 35 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.091 14.651 -12.867 19.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.059 4.059 3 C -0.195 4.195 4 C -0.196 4.196 5 C -0.028 4.028 6 H 0.118 0.882 7 C -0.213 4.213 8 C 0.259 3.741 9 O -0.467 6.467 10 N -0.274 5.274 11 C 0.162 3.838 12 C -0.580 4.580 13 H 0.067 0.933 14 C -0.190 4.190 15 N -0.567 5.567 16 Si 0.796 3.204 17 H -0.195 1.195 18 H -0.203 1.203 19 H -0.192 1.192 20 N -0.173 5.173 21 H 0.081 0.919 22 H 0.103 0.897 23 H 0.062 0.938 24 H 0.080 0.920 25 H 0.095 0.905 26 H 0.080 0.920 27 H 0.069 0.931 28 H 0.094 0.906 29 H 0.076 0.924 30 H 0.138 0.862 31 H 0.148 0.852 32 H 0.024 0.976 33 H 0.050 0.950 34 H 0.079 0.921 35 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 0.517 14.033 -12.215 18.612 hybrid contribution -0.224 -0.358 0.845 0.944 sum 0.292 13.675 -11.371 17.787 Atomic orbital electron populations 1.22105 0.94079 1.01465 1.03560 1.20666 0.95967 0.96610 0.92652 1.21839 1.01599 0.92959 1.03082 1.21829 1.01392 1.00111 0.96224 1.23163 1.00732 0.84455 0.94411 0.88196 1.23194 1.05759 0.95780 0.96534 1.22254 0.76636 0.87582 0.87612 1.90631 1.52592 1.87172 1.16351 1.48136 1.68439 1.07520 1.03309 1.18769 0.96185 0.75542 0.93284 1.21632 0.95929 0.99348 1.41090 0.93260 1.25841 1.01158 0.96387 0.95588 1.70029 1.31420 1.08735 1.46534 0.85305 0.78723 0.78323 0.78071 1.19514 1.20294 1.19175 1.62909 1.33863 1.25780 0.94701 0.91886 0.89700 0.93786 0.91966 0.90497 0.91968 0.93142 0.90622 0.92402 0.86205 0.85236 0.97601 0.94966 0.92149 0.83890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 7.87 71.98 0.57 -1.97 16 2 C -0.06 -1.01 0.58 -52.18 -0.03 -1.04 16 3 C -0.14 -1.79 8.32 71.98 0.60 -1.19 16 4 C -0.14 -2.34 8.33 71.98 0.60 -1.74 16 5 C 0.08 2.13 2.95 45.29 0.13 2.26 16 6 H 0.10 2.72 8.14 -2.39 -0.02 2.70 16 7 C -0.17 -4.95 5.61 30.81 0.17 -4.78 16 8 C 0.47 21.17 8.16 88.04 0.72 21.89 16 9 O -0.59 -32.13 17.68 -3.06 -0.05 -32.19 16 10 N -0.45 -20.86 3.33 -465.73 -1.55 -22.41 16 11 C 0.28 15.84 5.82 85.63 0.50 16.34 16 12 C -0.54 -32.65 9.38 25.60 0.24 -32.41 16 13 H 0.05 3.01 7.81 -2.91 -0.02 2.99 16 14 C 0.01 0.55 5.46 84.66 0.46 1.01 16 15 N -0.93 -56.63 13.29 21.45 0.28 -56.34 16 16 Si 0.97 46.14 29.54 68.60 2.03 48.16 16 17 H -0.27 -12.64 7.11 99.48 0.71 -11.94 16 18 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 19 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 20 N -0.44 -15.65 7.13 -163.92 -1.17 -16.82 16 21 H 0.06 1.00 6.22 -2.39 -0.01 0.99 16 22 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 23 H 0.04 0.85 6.08 -2.39 -0.01 0.84 16 24 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.06 0.78 7.50 -2.39 -0.02 0.76 16 27 H 0.05 1.01 7.46 -2.39 -0.02 0.99 16 28 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.12 3.05 8.14 -2.39 -0.02 3.03 16 31 H 0.13 3.04 5.65 -2.38 -0.01 3.03 16 32 H 0.01 0.38 8.01 -2.39 -0.02 0.36 16 33 H 0.03 1.82 8.14 -2.39 -0.02 1.81 16 34 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 35 H 0.34 10.45 6.07 -210.71 -1.28 9.17 16 Total: -1.00 -74.14 283.00 3.29 -70.85 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -0.20 Total: 10.38 kcal Atomic # 6 Polarization: -5.59 SS G_CDS: 3.96 Total: -1.63 kcal Atomic # 7 Polarization: -93.13 SS G_CDS: -2.44 Total: -95.57 kcal Atomic # 8 Polarization: -32.13 SS G_CDS: -0.05 Total: -32.19 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.16 kcal Total: -74.14 3.29 -70.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260788488.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.246 kcal (2) G-P(sol) polarization free energy of solvation -74.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds