Wall clock time and date at job start Mon Mar 30 2020 02:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86801 * 119.99947 * 2 1 4 4 H 1.48498 * 109.47314 * 90.00478 * 3 2 1 5 5 H 1.48505 * 109.47322 * 210.00569 * 3 2 1 6 6 H 1.48500 * 109.47355 * 330.00355 * 3 2 1 7 7 C 1.37882 * 120.00110 * 180.28175 * 2 1 3 8 8 H 1.07992 * 120.00000 * 359.72006 * 7 2 1 9 9 C 1.50702 * 119.99727 * 179.72113 * 7 2 1 10 10 C 1.53005 * 109.46724 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47084 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.49898 * 304.94098 * 11 10 9 13 13 C 1.53041 * 109.49933 * 184.83832 * 11 10 9 14 14 C 1.53042 * 109.53678 * 178.68435 * 13 11 10 15 15 C 1.53191 * 109.31165 * 61.37227 * 14 13 11 16 16 N 1.46935 * 108.77252 * 305.35774 * 15 14 13 17 17 C 1.34771 * 120.63161 * 233.58919 * 16 15 14 18 18 N 1.34774 * 119.99999 * 354.79355 * 17 16 15 19 19 O 1.21584 * 120.00179 * 174.79746 * 17 16 15 20 20 C 1.46920 * 118.73630 * 53.61266 * 16 15 14 21 21 H 0.96992 * 120.00223 * 359.97438 * 1 2 3 22 22 H 1.08991 * 109.47493 * 299.99342 * 9 7 2 23 23 H 1.08999 * 109.47360 * 60.00148 * 9 7 2 24 24 H 1.08997 * 109.47641 * 300.00172 * 10 9 7 25 25 H 1.08998 * 109.47164 * 60.00504 * 10 9 7 26 26 H 1.09000 * 109.45826 * 298.70847 * 13 11 10 27 27 H 1.09003 * 109.45714 * 58.66607 * 13 11 10 28 28 H 1.08997 * 109.50172 * 301.41525 * 14 13 11 29 29 H 1.09000 * 109.49378 * 181.31513 * 14 13 11 30 30 H 1.09004 * 109.58430 * 185.57826 * 15 14 13 31 31 H 1.08999 * 109.59066 * 65.14387 * 15 14 13 32 32 H 0.97004 * 120.00448 * 4.97814 * 18 17 16 33 33 H 0.97008 * 120.00360 * 184.96771 * 18 17 16 34 34 H 1.08999 * 109.58773 * 186.59927 * 20 16 15 35 35 H 1.09005 * 109.58879 * 66.17860 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5466 1.4403 -0.7002 6 1 1.4465 2.6527 -0.7000 7 6 2.0045 -1.1941 -0.0059 8 1 1.4646 -2.1293 -0.0059 9 6 3.5115 -1.1939 -0.0122 10 6 4.0215 -2.6365 -0.0173 11 6 5.5515 -2.6364 -0.0244 12 1 5.9114 -2.0464 -0.8672 13 6 6.0618 -4.0737 -0.1512 14 6 7.5917 -4.0719 -0.1913 15 6 8.1321 -3.4805 1.1144 16 7 7.5323 -2.1545 1.3168 17 6 8.3097 -1.0744 1.5297 18 7 9.6430 -1.2196 1.6631 19 8 7.8084 0.0309 1.6015 20 6 6.0689 -2.0286 1.2832 21 1 -0.4850 0.8400 0.0004 22 1 3.8711 -0.6780 -0.9024 23 1 3.8786 -0.6823 0.8775 24 1 3.6620 -3.1522 0.8731 25 1 3.6545 -3.1485 -0.9068 26 1 5.7216 -4.6566 0.7048 27 1 5.6750 -4.5167 -1.0689 28 1 7.9329 -3.4687 -1.0326 29 1 7.9538 -5.0937 -0.3051 30 1 9.2162 -3.3854 1.0513 31 1 7.8681 -4.1320 1.9475 32 1 10.0515 -2.0899 1.5344 33 1 10.1942 -0.4536 1.8878 34 1 5.7915 -0.9756 1.3316 35 1 5.6367 -2.5617 2.1301 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260964911.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:24 Heat of formation + Delta-G solvation = -48.728271 kcal Electronic energy + Delta-G solvation = -16063.142916 eV Core-core repulsion = 13481.346261 eV Total energy + Delta-G solvation = -2581.796656 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.27193 -37.67222 -34.73037 -33.44562 -32.39725 -31.82562 -29.24159 -25.35504 -25.25082 -22.57580 -20.90775 -19.87480 -19.39221 -18.37425 -16.89840 -16.59468 -15.33740 -14.95659 -14.62202 -14.42527 -14.08967 -13.40061 -13.33749 -12.99079 -12.80817 -12.48189 -12.10437 -11.41016 -11.15298 -10.99201 -10.92768 -10.67548 -10.32375 -10.08389 -9.77681 -9.71086 -9.65012 -9.32740 -9.07256 -8.48086 -8.44429 -5.96801 -3.94276 2.85105 3.25938 3.41491 3.48157 3.56264 4.06497 4.55087 4.69368 4.84476 4.92996 5.21385 5.32751 5.38157 5.39726 5.61520 5.79399 5.84747 5.93798 6.07422 6.16368 6.31768 6.35602 6.50453 6.61267 6.79963 6.82245 6.91034 7.02008 7.40967 7.53201 7.87843 7.89699 8.61564 8.66494 9.08257 9.67005 11.16599 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.030970 B = 0.007448 C = 0.006198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.869503 B = 3758.485252 C = 4516.591837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.066 3.934 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.264 1.264 6 H -0.289 1.289 7 C -0.519 4.519 8 H 0.071 0.929 9 C -0.017 4.017 10 C -0.095 4.095 11 C -0.104 4.104 12 H 0.069 0.931 13 C -0.115 4.115 14 C -0.135 4.135 15 C 0.113 3.887 16 N -0.627 5.627 17 C 0.705 3.295 18 N -0.873 5.873 19 O -0.589 6.589 20 C 0.131 3.869 21 H 0.262 0.738 22 H 0.015 0.985 23 H 0.014 0.986 24 H 0.055 0.945 25 H 0.057 0.943 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.393 0.607 33 H 0.411 0.589 34 H 0.100 0.900 35 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.292 -9.163 1.917 22.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.134 4.134 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.188 1.188 6 H -0.215 1.215 7 C -0.557 4.557 8 H 0.089 0.911 9 C -0.054 4.054 10 C -0.133 4.133 11 C -0.123 4.123 12 H 0.088 0.912 13 C -0.152 4.152 14 C -0.173 4.173 15 C -0.011 4.011 16 N -0.365 5.365 17 C 0.405 3.595 18 N -0.443 5.443 19 O -0.466 6.466 20 C 0.008 3.992 21 H 0.072 0.928 22 H 0.033 0.967 23 H 0.032 0.968 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.223 0.777 33 H 0.242 0.758 34 H 0.118 0.882 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 19.637 -8.379 1.947 21.439 hybrid contribution 0.838 0.721 0.002 1.106 sum 20.475 -7.658 1.948 21.947 Atomic orbital electron populations 1.69916 1.06313 1.26811 1.51511 1.25019 0.94694 0.99168 0.94548 0.86819 0.80435 0.83594 0.78745 1.20208 1.18826 1.21504 1.21165 0.89643 0.94338 1.50550 0.91113 1.19638 0.96981 0.92387 0.96418 1.21465 0.90486 1.00002 1.01311 1.21652 0.97913 0.95245 0.97514 0.91244 1.21596 0.93930 0.97428 1.02276 1.21933 0.97356 1.00722 0.97312 1.21616 0.96882 0.84431 0.98187 1.47381 1.07425 1.06330 1.75346 1.15916 0.81563 0.84361 0.77710 1.43176 1.06809 1.14948 1.79383 1.90991 1.73257 1.23900 1.58493 1.21747 0.76048 1.03916 0.97452 0.92841 0.96701 0.96784 0.92617 0.92394 0.91812 0.91591 0.91627 0.91020 0.91040 0.91345 0.77683 0.75776 0.88198 0.91573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.75 13.96 55.43 0.77 -27.98 16 2 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 3 Si 0.88 23.06 27.47 -169.99 -4.67 18.39 16 4 H -0.28 -7.21 7.11 56.52 0.40 -6.80 16 5 H -0.26 -6.81 6.54 56.52 0.37 -6.44 16 6 H -0.29 -7.47 7.11 56.52 0.40 -7.06 16 7 C -0.52 -15.20 9.66 -34.44 -0.33 -15.53 16 8 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 9 C -0.02 -0.42 3.80 -27.88 -0.11 -0.52 16 10 C -0.09 -1.84 4.63 -26.73 -0.12 -1.97 16 11 C -0.10 -1.66 2.34 -90.50 -0.21 -1.87 16 12 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 13 C -0.11 -1.39 5.17 -26.69 -0.14 -1.52 16 14 C -0.13 -1.28 6.08 -26.61 -0.16 -1.44 16 15 C 0.11 1.03 6.39 -3.71 -0.02 1.01 16 16 N -0.63 -8.57 2.97 -178.49 -0.53 -9.10 16 17 C 0.70 10.65 8.57 -86.93 -0.75 9.90 16 18 N -0.87 -8.34 8.78 27.63 0.24 -8.09 16 19 O -0.59 -12.02 16.60 5.29 0.09 -11.93 16 20 C 0.13 2.14 5.33 -3.71 -0.02 2.12 16 21 H 0.26 7.79 8.31 -40.82 -0.34 7.46 16 22 H 0.01 0.37 7.20 -51.93 -0.37 0.00 16 23 H 0.01 0.35 6.13 -51.93 -0.32 0.03 16 24 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 25 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.45 5.65 -51.93 -0.29 0.16 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.39 2.46 6.32 -40.82 -0.26 2.20 16 33 H 0.41 3.40 8.93 -40.82 -0.36 3.03 16 34 H 0.10 1.99 5.71 -51.93 -0.30 1.70 16 35 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 277.47 15.07 4.18 4.18 Total: -1.00 -35.37 277.47 -7.17 -42.54 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -5.30 Total: -0.09 kcal Atomic # 6 Polarization: -5.95 SS G_CDS: -1.96 Total: -7.91 kcal Atomic # 7 Polarization: -45.66 SS G_CDS: 0.49 Total: -45.18 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: 0.09 Total: -11.93 kcal Atomic # 14 Polarization: 23.06 SS G_CDS: -4.67 Total: 18.39 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -35.37 -7.17 -42.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260964911.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.191 kcal (2) G-P(sol) polarization free energy of solvation -35.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds