Wall clock time and date at job start Mon Mar 30 2020 02:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86801 * 119.99947 * 2 1 4 4 H 1.48498 * 109.47314 * 90.00478 * 3 2 1 5 5 H 1.48505 * 109.47322 * 210.00569 * 3 2 1 6 6 H 1.48500 * 109.47355 * 330.00355 * 3 2 1 7 7 C 1.37882 * 120.00110 * 180.28175 * 2 1 3 8 8 H 1.07992 * 120.00000 * 359.72006 * 7 2 1 9 9 C 1.50702 * 119.99727 * 179.72113 * 7 2 1 10 10 C 1.53005 * 109.46724 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47084 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.49898 * 304.94098 * 11 10 9 13 13 C 1.53041 * 109.49933 * 184.83832 * 11 10 9 14 14 C 1.53042 * 109.53678 * 178.68435 * 13 11 10 15 15 C 1.53191 * 109.31165 * 61.37227 * 14 13 11 16 16 N 1.46935 * 108.77252 * 305.35774 * 15 14 13 17 17 C 1.34771 * 120.63161 * 233.58919 * 16 15 14 18 18 N 1.34774 * 119.99999 * 354.79355 * 17 16 15 19 19 O 1.21584 * 120.00179 * 174.79746 * 17 16 15 20 20 C 1.46920 * 118.73630 * 53.61266 * 16 15 14 21 21 H 0.96992 * 120.00223 * 359.97438 * 1 2 3 22 22 H 1.08991 * 109.47493 * 299.99342 * 9 7 2 23 23 H 1.08999 * 109.47360 * 60.00148 * 9 7 2 24 24 H 1.08997 * 109.47641 * 300.00172 * 10 9 7 25 25 H 1.08998 * 109.47164 * 60.00504 * 10 9 7 26 26 H 1.09000 * 109.45826 * 298.70847 * 13 11 10 27 27 H 1.09003 * 109.45714 * 58.66607 * 13 11 10 28 28 H 1.08997 * 109.50172 * 301.41525 * 14 13 11 29 29 H 1.09000 * 109.49378 * 181.31513 * 14 13 11 30 30 H 1.09004 * 109.58430 * 185.57826 * 15 14 13 31 31 H 1.08999 * 109.59066 * 65.14387 * 15 14 13 32 32 H 0.97004 * 120.00448 * 4.97814 * 18 17 16 33 33 H 0.97008 * 120.00360 * 184.96771 * 18 17 16 34 34 H 1.08999 * 109.58773 * 186.59927 * 20 16 15 35 35 H 1.09005 * 109.58879 * 66.17860 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5466 1.4403 -0.7002 6 1 1.4465 2.6527 -0.7000 7 6 2.0045 -1.1941 -0.0059 8 1 1.4646 -2.1293 -0.0059 9 6 3.5115 -1.1939 -0.0122 10 6 4.0215 -2.6365 -0.0173 11 6 5.5515 -2.6364 -0.0244 12 1 5.9114 -2.0464 -0.8672 13 6 6.0618 -4.0737 -0.1512 14 6 7.5917 -4.0719 -0.1913 15 6 8.1321 -3.4805 1.1144 16 7 7.5323 -2.1545 1.3168 17 6 8.3097 -1.0744 1.5297 18 7 9.6430 -1.2196 1.6631 19 8 7.8084 0.0309 1.6015 20 6 6.0689 -2.0286 1.2832 21 1 -0.4850 0.8400 0.0004 22 1 3.8711 -0.6780 -0.9024 23 1 3.8786 -0.6823 0.8775 24 1 3.6620 -3.1522 0.8731 25 1 3.6545 -3.1485 -0.9068 26 1 5.7216 -4.6566 0.7048 27 1 5.6750 -4.5167 -1.0689 28 1 7.9329 -3.4687 -1.0326 29 1 7.9538 -5.0937 -0.3051 30 1 9.2162 -3.3854 1.0513 31 1 7.8681 -4.1320 1.9475 32 1 10.0515 -2.0899 1.5344 33 1 10.1942 -0.4536 1.8878 34 1 5.7915 -0.9756 1.3316 35 1 5.6367 -2.5617 2.1301 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260964911.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:24 Heat of formation + Delta-G solvation = -75.240038 kcal Electronic energy + Delta-G solvation = -16064.292553 eV Core-core repulsion = 13481.346261 eV Total energy + Delta-G solvation = -2582.946292 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.36907 -38.86935 -36.20653 -34.95277 -33.92910 -33.06054 -30.88268 -26.98602 -26.37978 -23.96320 -22.17686 -21.45196 -20.48525 -19.36974 -18.85442 -17.88459 -16.50036 -16.37731 -16.09905 -15.70489 -15.30857 -14.94459 -14.55069 -14.45716 -14.21480 -13.95903 -13.67859 -13.08981 -12.80584 -12.41108 -12.14527 -11.93925 -11.83842 -11.64215 -11.47456 -11.31456 -11.16294 -10.91093 -10.76179 -10.72639 -9.53606 -8.32562 -6.34321 1.30544 1.32288 1.45128 1.82747 2.12592 2.32107 3.03207 3.26192 3.82977 3.90745 3.96803 4.13601 4.35805 4.46586 4.56729 4.66552 4.80626 4.82068 4.88421 4.92978 5.06407 5.15158 5.20012 5.34428 5.44675 5.49536 5.58495 5.64608 5.68605 5.90408 6.01274 6.27719 6.73783 6.96343 7.30450 7.62807 8.84186 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.030970 B = 0.007448 C = 0.006198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.869503 B = 3758.485252 C = 4516.591837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.011 3.989 3 Si 0.939 3.061 4 H -0.271 1.271 5 H -0.259 1.259 6 H -0.278 1.278 7 C -0.527 4.527 8 H 0.040 0.960 9 C -0.014 4.014 10 C -0.087 4.087 11 C -0.093 4.093 12 H 0.053 0.947 13 C -0.111 4.111 14 C -0.129 4.129 15 C 0.105 3.895 16 N -0.626 5.626 17 C 0.695 3.305 18 N -0.845 5.845 19 O -0.652 6.652 20 C 0.133 3.867 21 H 0.266 0.734 22 H 0.007 0.993 23 H 0.011 0.989 24 H 0.057 0.943 25 H 0.056 0.944 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.058 0.942 29 H 0.108 0.892 30 H 0.106 0.894 31 H 0.087 0.913 32 H 0.413 0.587 33 H 0.419 0.581 34 H 0.056 0.944 35 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.261 -10.521 2.023 25.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.186 4.186 3 Si 0.764 3.236 4 H -0.196 1.196 5 H -0.183 1.183 6 H -0.203 1.203 7 C -0.565 4.565 8 H 0.058 0.942 9 C -0.051 4.051 10 C -0.125 4.125 11 C -0.113 4.113 12 H 0.072 0.928 13 C -0.149 4.149 14 C -0.167 4.167 15 C -0.016 4.016 16 N -0.363 5.363 17 C 0.395 3.605 18 N -0.417 5.417 19 O -0.534 6.534 20 C 0.009 3.991 21 H 0.075 0.925 22 H 0.025 0.975 23 H 0.029 0.971 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.093 0.907 27 H 0.088 0.912 28 H 0.076 0.924 29 H 0.126 0.874 30 H 0.124 0.876 31 H 0.105 0.895 32 H 0.247 0.753 33 H 0.252 0.748 34 H 0.075 0.925 35 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 22.671 -9.803 2.047 24.784 hybrid contribution -0.111 1.055 -0.027 1.061 sum 22.560 -8.748 2.020 24.281 Atomic orbital electron populations 1.70036 1.07898 1.28002 1.52956 1.25863 0.95492 1.02875 0.94398 0.85820 0.79272 0.79455 0.79067 1.19637 1.18311 1.20302 1.21541 0.92091 0.93181 1.49736 0.94196 1.19580 0.93919 0.95881 0.95721 1.21338 0.93402 0.96420 1.01360 1.21487 0.94944 0.98149 0.96723 0.92830 1.21570 0.96192 0.94104 1.03014 1.21921 0.94912 1.02756 0.97073 1.22009 0.98716 0.82097 0.98794 1.47367 1.06187 1.07903 1.74847 1.16219 0.82997 0.83709 0.77579 1.42870 1.04732 1.16441 1.77614 1.90948 1.74748 1.26467 1.61253 1.21476 0.78347 1.01346 0.97908 0.92469 0.97452 0.97082 0.92390 0.92492 0.90720 0.91182 0.92356 0.87414 0.87556 0.89490 0.75344 0.74792 0.92506 0.90752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.52 13.96 21.45 0.30 -61.22 16 2 C 0.01 0.66 5.47 84.66 0.46 1.12 16 3 Si 0.94 48.41 27.47 68.60 1.88 50.29 16 4 H -0.27 -13.67 7.11 99.48 0.71 -12.96 16 5 H -0.26 -13.03 6.54 99.48 0.65 -12.38 16 6 H -0.28 -13.71 7.11 99.48 0.71 -13.01 16 7 C -0.53 -31.80 9.66 25.60 0.25 -31.55 16 8 H 0.04 2.58 7.99 -2.91 -0.02 2.56 16 9 C -0.01 -0.68 3.80 29.85 0.11 -0.57 16 10 C -0.09 -3.41 4.63 30.60 0.14 -3.27 16 11 C -0.09 -2.91 2.34 -10.71 -0.03 -2.93 16 12 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 13 C -0.11 -2.36 5.17 30.62 0.16 -2.20 16 14 C -0.13 -1.87 6.08 30.67 0.19 -1.69 16 15 C 0.11 1.48 6.39 86.36 0.55 2.03 16 16 N -0.63 -15.88 2.97 -836.90 -2.49 -18.36 16 17 C 0.70 20.07 8.57 179.06 1.53 21.61 16 18 N -0.84 -13.72 8.78 -184.76 -1.62 -15.35 16 19 O -0.65 -26.94 16.60 -3.98 -0.07 -27.00 16 20 C 0.13 4.29 5.33 86.37 0.46 4.75 16 21 H 0.27 16.13 8.31 -92.71 -0.77 15.36 16 22 H 0.01 0.37 7.20 -2.39 -0.02 0.35 16 23 H 0.01 0.56 6.13 -2.39 -0.01 0.54 16 24 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 25 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 26 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.11 0.75 5.65 -2.39 -0.01 0.74 16 31 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.41 3.37 6.32 -92.71 -0.59 2.79 16 33 H 0.42 5.89 8.93 -92.70 -0.83 5.06 16 34 H 0.06 2.34 5.71 -2.39 -0.01 2.32 16 35 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 Total: -1.00 -80.32 277.47 1.46 -78.86 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -0.38 Total: 5.47 kcal Atomic # 6 Polarization: -16.53 SS G_CDS: 3.83 Total: -12.70 kcal Atomic # 7 Polarization: -91.11 SS G_CDS: -3.81 Total: -94.93 kcal Atomic # 8 Polarization: -26.94 SS G_CDS: -0.07 Total: -27.00 kcal Atomic # 14 Polarization: 48.41 SS G_CDS: 1.88 Total: 50.29 kcal Total: -80.32 1.46 -78.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260964911.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.621 kcal (2) G-P(sol) polarization free energy of solvation -80.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds