Wall clock time and date at job start Mon Mar 30 2020 03:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47467 * 2 1 4 4 C 1.53001 * 109.46823 * 119.99744 * 2 1 3 5 5 H 1.09006 * 109.59121 * 180.14800 * 4 2 1 6 6 C 1.52994 * 109.59280 * 300.62131 * 4 2 1 7 7 N 1.46000 * 110.04402 * 170.06744 * 6 4 2 8 8 C 1.33720 * 122.92785 * 341.84514 * 7 6 4 9 9 O 1.21279 * 118.62574 * 181.69061 * 8 7 6 10 10 C 1.50255 * 122.75066 * 1.65935 * 8 7 6 11 11 N 1.46904 * 109.97887 * 342.82540 * 10 8 7 12 12 C 1.46900 * 110.99971 * 173.66578 * 11 10 8 13 13 C 1.50701 * 109.47079 * 294.15511 * 12 11 10 14 14 H 1.08005 * 119.99815 * 0.02562 * 13 12 11 15 15 C 1.37874 * 120.00312 * 180.02562 * 13 12 11 16 16 N 1.31510 * 119.99484 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00222 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47147 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.47009 * 119.99843 * 17 15 13 20 20 H 1.48497 * 109.47022 * 240.00092 * 17 15 13 21 21 H 1.08995 * 109.47598 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.47477 * 300.00598 * 1 2 3 23 23 H 1.09008 * 109.47125 * 60.00125 * 1 2 3 24 24 H 1.09000 * 109.46957 * 239.99320 * 2 1 3 25 25 H 1.08996 * 109.47677 * 174.26420 * 3 2 1 26 26 H 1.09004 * 109.47227 * 294.26397 * 3 2 1 27 27 H 1.09005 * 109.47405 * 54.26008 * 3 2 1 28 28 H 1.08997 * 109.37498 * 49.88778 * 6 4 2 29 29 H 1.09002 * 109.37626 * 290.24320 * 6 4 2 30 30 H 0.97000 * 118.54232 * 162.12357 * 7 6 4 31 31 H 1.08993 * 109.38592 * 102.97887 * 10 8 7 32 32 H 1.08997 * 109.38858 * 222.77402 * 10 8 7 33 33 H 1.08995 * 109.47353 * 54.15507 * 12 11 10 34 34 H 1.09001 * 109.47028 * 174.15845 * 12 11 10 35 35 H 0.97007 * 120.00039 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 3.1299 -0.7201 1.2527 6 6 1.5187 -0.0112 2.5003 7 7 1.7980 -0.8164 3.6857 8 6 2.0902 -2.1199 3.6266 9 8 2.2786 -2.7207 4.6632 10 6 2.1941 -2.8717 2.3298 11 7 1.5477 -2.1084 1.2539 12 6 1.7656 -2.7487 -0.0501 13 6 3.2311 -2.6954 -0.3973 14 1 3.9307 -2.2324 0.2830 15 6 3.6789 -3.2374 -1.5833 16 7 2.8269 -3.8007 -2.4118 17 14 5.4955 -3.1719 -2.0133 18 1 6.2380 -2.4900 -0.9229 19 1 6.0153 -4.5532 -2.1782 20 1 5.6773 -2.4199 -3.2808 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3634 0.5138 -0.8901 24 1 1.8933 -0.5139 -0.8899 25 1 3.1251 1.4442 0.1027 26 1 1.7630 1.9258 -0.9369 27 1 1.5952 1.9852 0.8342 28 1 0.4428 0.1379 2.4096 29 1 2.0092 0.9574 2.5972 30 1 1.7665 -0.3876 4.5552 31 1 3.2447 -3.0251 2.0838 32 1 1.7014 -3.8387 2.4317 33 1 1.4410 -3.7882 -0.0032 34 1 1.1921 -2.2229 -0.8134 35 1 3.1418 -4.1818 -3.2464 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261048173.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:28 Heat of formation + Delta-G solvation = -39.163859 kcal Electronic energy + Delta-G solvation = -16796.651719 eV Core-core repulsion = 14215.269808 eV Total energy + Delta-G solvation = -2581.381911 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.99648 -37.65879 -34.41899 -33.96217 -32.34848 -28.06659 -27.87503 -26.73736 -24.92881 -23.69720 -21.39289 -19.95721 -18.00133 -16.99265 -16.30252 -16.17810 -15.25841 -14.69666 -14.41273 -13.83676 -13.57236 -13.36872 -13.06227 -12.80625 -12.40898 -11.88125 -11.66740 -11.49022 -11.32932 -11.10340 -10.94885 -10.63556 -10.43493 -10.12450 -10.00994 -9.86415 -9.77980 -9.20089 -8.70087 -8.51344 -7.42459 -6.13230 -4.22628 3.07116 3.20785 3.30115 3.32649 3.69454 4.32863 4.71386 5.07409 5.17094 5.20228 5.42392 5.52885 5.62571 5.76661 5.87082 6.00301 6.02854 6.17387 6.26833 6.31812 6.37828 6.50538 6.63857 6.86653 6.94952 7.09346 7.14743 7.43255 7.64701 7.77219 7.82869 8.01720 8.14513 8.61874 8.86187 9.45093 10.92016 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.023111 B = 0.010768 C = 0.008755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.263142 B = 2599.613727 C = 3197.400837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.089 4.089 3 C -0.145 4.145 4 C 0.082 3.918 5 H 0.053 0.947 6 C 0.113 3.887 7 N -0.721 5.721 8 C 0.526 3.474 9 O -0.573 6.573 10 C 0.041 3.959 11 N -0.528 5.528 12 C 0.181 3.819 13 C -0.553 4.553 14 H 0.056 0.944 15 C 0.069 3.931 16 N -0.886 5.886 17 Si 0.886 3.114 18 H -0.274 1.274 19 H -0.283 1.283 20 H -0.283 1.283 21 H 0.069 0.931 22 H 0.045 0.955 23 H 0.042 0.958 24 H 0.102 0.898 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.047 0.953 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.391 0.609 31 H 0.082 0.918 32 H 0.103 0.897 33 H 0.032 0.968 34 H 0.047 0.953 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.920 9.241 4.622 10.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.108 4.108 3 C -0.203 4.203 4 C -0.028 4.028 5 H 0.071 0.929 6 C -0.012 4.012 7 N -0.372 5.372 8 C 0.314 3.686 9 O -0.452 6.452 10 C -0.090 4.090 11 N -0.253 5.253 12 C 0.056 3.944 13 C -0.592 4.592 14 H 0.074 0.926 15 C -0.134 4.134 16 N -0.524 5.524 17 Si 0.714 3.286 18 H -0.199 1.199 19 H -0.209 1.209 20 H -0.209 1.209 21 H 0.088 0.912 22 H 0.064 0.936 23 H 0.061 0.939 24 H 0.120 0.880 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.066 0.934 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.225 0.775 31 H 0.099 0.901 32 H 0.121 0.879 33 H 0.050 0.950 34 H 0.065 0.935 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.354 8.723 4.849 10.529 hybrid contribution 1.974 0.188 -0.283 2.003 sum -1.380 8.911 4.567 10.108 Atomic orbital electron populations 1.21826 0.95324 1.02656 0.99841 1.21149 0.95883 0.94798 0.98992 1.21871 1.00855 0.96585 1.01010 1.21723 0.97906 0.90176 0.92965 0.92920 1.21797 1.01142 0.93462 0.84765 1.45586 1.71450 1.10006 1.10147 1.20637 0.74262 0.81882 0.91810 1.90686 1.51897 1.67141 1.35494 1.22117 1.01478 0.97612 0.87751 1.63143 1.54634 1.00909 1.06631 1.19918 0.95471 0.94900 0.84138 1.21702 0.94186 1.38768 1.04568 0.92554 1.24913 0.97431 0.94784 0.96275 1.69940 1.34045 1.37801 1.10611 0.86629 0.85656 0.77899 0.78411 1.19863 1.20896 1.20896 0.91228 0.93609 0.93859 0.87970 0.92936 0.92908 0.93366 0.90982 0.91292 0.77502 0.90055 0.87933 0.94961 0.93493 0.92736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 8.45 37.16 0.31 -1.74 16 2 C -0.09 -1.44 2.16 -90.62 -0.20 -1.64 16 3 C -0.15 -1.92 8.70 37.16 0.32 -1.59 16 4 C 0.08 1.40 1.23 -67.56 -0.08 1.32 16 5 H 0.05 1.02 6.74 -51.93 -0.35 0.67 16 6 C 0.11 1.57 5.95 -4.32 -0.03 1.55 16 7 N -0.72 -11.04 5.52 -61.06 -0.34 -11.37 16 8 C 0.53 9.93 7.81 -11.67 -0.09 9.83 16 9 O -0.57 -12.38 17.82 5.56 0.10 -12.28 16 10 C 0.04 0.82 5.43 -5.19 -0.03 0.79 16 11 N -0.53 -10.35 4.16 -229.56 -0.95 -11.31 16 12 C 0.18 4.21 4.33 -4.98 -0.02 4.19 16 13 C -0.55 -13.97 6.96 -34.44 -0.24 -14.21 16 14 H 0.06 1.43 5.87 -52.48 -0.31 1.12 16 15 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 16 N -0.89 -24.56 13.29 55.43 0.74 -23.82 16 17 Si 0.89 20.53 29.54 -169.99 -5.02 15.51 16 18 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 21 H 0.07 1.17 6.76 -51.93 -0.35 0.82 16 22 H 0.04 0.59 6.21 -51.93 -0.32 0.27 16 23 H 0.04 0.59 8.14 -51.92 -0.42 0.17 16 24 H 0.10 2.04 5.90 -51.93 -0.31 1.73 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.54 7.00 -51.93 -0.36 0.17 16 28 H 0.07 0.96 5.93 -51.93 -0.31 0.65 16 29 H 0.07 0.80 7.14 -51.93 -0.37 0.43 16 30 H 0.39 5.13 8.84 -40.82 -0.36 4.77 16 31 H 0.08 1.73 6.68 -51.93 -0.35 1.38 16 32 H 0.10 2.02 8.14 -51.93 -0.42 1.60 16 33 H 0.03 0.83 8.12 -51.93 -0.42 0.41 16 34 H 0.05 1.14 5.59 -51.93 -0.29 0.85 16 35 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 269.79 15.07 4.07 4.07 Total: -1.00 -28.56 269.79 -6.48 -35.04 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -4.93 Total: 3.93 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: -0.14 Total: 0.23 kcal Atomic # 7 Polarization: -45.95 SS G_CDS: -0.56 Total: -46.50 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: 0.10 Total: -12.28 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -28.56 -6.48 -35.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261048173.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.120 kcal (2) G-P(sol) polarization free energy of solvation -28.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds