Wall clock time and date at job start Mon Mar 30 2020 03:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47467 * 2 1 4 4 C 1.53001 * 109.46823 * 119.99744 * 2 1 3 5 5 H 1.09006 * 109.59121 * 180.14800 * 4 2 1 6 6 C 1.52994 * 109.59280 * 300.62131 * 4 2 1 7 7 N 1.46000 * 110.04402 * 170.06744 * 6 4 2 8 8 C 1.33720 * 122.92785 * 341.84514 * 7 6 4 9 9 O 1.21279 * 118.62574 * 181.69061 * 8 7 6 10 10 C 1.50255 * 122.75066 * 1.65935 * 8 7 6 11 11 N 1.46904 * 109.97887 * 342.82540 * 10 8 7 12 12 C 1.46900 * 110.99971 * 173.66578 * 11 10 8 13 13 C 1.50701 * 109.47079 * 294.15511 * 12 11 10 14 14 H 1.08005 * 119.99815 * 0.02562 * 13 12 11 15 15 C 1.37874 * 120.00312 * 180.02562 * 13 12 11 16 16 N 1.31510 * 119.99484 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00222 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47147 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.47009 * 119.99843 * 17 15 13 20 20 H 1.48497 * 109.47022 * 240.00092 * 17 15 13 21 21 H 1.08995 * 109.47598 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.47477 * 300.00598 * 1 2 3 23 23 H 1.09008 * 109.47125 * 60.00125 * 1 2 3 24 24 H 1.09000 * 109.46957 * 239.99320 * 2 1 3 25 25 H 1.08996 * 109.47677 * 174.26420 * 3 2 1 26 26 H 1.09004 * 109.47227 * 294.26397 * 3 2 1 27 27 H 1.09005 * 109.47405 * 54.26008 * 3 2 1 28 28 H 1.08997 * 109.37498 * 49.88778 * 6 4 2 29 29 H 1.09002 * 109.37626 * 290.24320 * 6 4 2 30 30 H 0.97000 * 118.54232 * 162.12357 * 7 6 4 31 31 H 1.08993 * 109.38592 * 102.97887 * 10 8 7 32 32 H 1.08997 * 109.38858 * 222.77402 * 10 8 7 33 33 H 1.08995 * 109.47353 * 54.15507 * 12 11 10 34 34 H 1.09001 * 109.47028 * 174.15845 * 12 11 10 35 35 H 0.97007 * 120.00039 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 3.1299 -0.7201 1.2527 6 6 1.5187 -0.0112 2.5003 7 7 1.7980 -0.8164 3.6857 8 6 2.0902 -2.1199 3.6266 9 8 2.2786 -2.7207 4.6632 10 6 2.1941 -2.8717 2.3298 11 7 1.5477 -2.1084 1.2539 12 6 1.7656 -2.7487 -0.0501 13 6 3.2311 -2.6954 -0.3973 14 1 3.9307 -2.2324 0.2830 15 6 3.6789 -3.2374 -1.5833 16 7 2.8269 -3.8007 -2.4118 17 14 5.4955 -3.1719 -2.0133 18 1 6.2380 -2.4900 -0.9229 19 1 6.0153 -4.5532 -2.1782 20 1 5.6773 -2.4199 -3.2808 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3634 0.5138 -0.8901 24 1 1.8933 -0.5139 -0.8899 25 1 3.1251 1.4442 0.1027 26 1 1.7630 1.9258 -0.9369 27 1 1.5952 1.9852 0.8342 28 1 0.4428 0.1379 2.4096 29 1 2.0092 0.9574 2.5972 30 1 1.7665 -0.3876 4.5552 31 1 3.2447 -3.0251 2.0838 32 1 1.7014 -3.8387 2.4317 33 1 1.4410 -3.7882 -0.0032 34 1 1.1921 -2.2229 -0.8134 35 1 3.1418 -4.1818 -3.2464 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261048173.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:28 Heat of formation + Delta-G solvation = -60.350027 kcal Electronic energy + Delta-G solvation = -16797.570421 eV Core-core repulsion = 14215.269808 eV Total energy + Delta-G solvation = -2582.300613 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.48277 -39.17660 -36.01392 -35.32458 -34.27178 -29.71574 -29.39612 -27.93191 -26.65031 -25.13014 -23.12453 -21.35742 -19.59842 -18.40945 -18.00112 -17.80092 -16.83805 -16.43917 -15.89206 -15.30262 -15.12187 -14.89075 -14.53414 -14.12180 -14.00231 -13.41336 -13.19866 -12.94482 -12.76941 -12.74497 -12.56510 -12.30265 -12.04270 -11.77937 -11.61618 -11.36960 -11.28865 -10.75935 -10.56408 -10.00385 -9.15639 -8.15730 -6.32280 1.34944 1.38758 1.47550 1.54522 2.35824 2.37515 3.11995 3.14504 3.63949 3.88969 4.13024 4.26278 4.43061 4.48738 4.60916 4.63580 4.69342 4.89785 4.97133 5.07399 5.18482 5.24077 5.29585 5.36986 5.44578 5.66625 5.67255 5.79584 5.85276 6.01600 6.15968 6.22122 6.37841 6.85346 7.19830 7.38494 8.87781 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.023111 B = 0.010768 C = 0.008755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.263142 B = 2599.613727 C = 3197.400837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.087 4.087 3 C -0.139 4.139 4 C 0.077 3.923 5 H 0.030 0.970 6 C 0.117 3.883 7 N -0.703 5.703 8 C 0.529 3.471 9 O -0.603 6.603 10 C 0.042 3.958 11 N -0.521 5.521 12 C 0.198 3.802 13 C -0.550 4.550 14 H 0.053 0.947 15 C 0.020 3.980 16 N -0.920 5.920 17 Si 0.946 3.054 18 H -0.270 1.270 19 H -0.283 1.283 20 H -0.277 1.277 21 H 0.041 0.959 22 H 0.073 0.927 23 H 0.053 0.947 24 H 0.056 0.944 25 H 0.046 0.954 26 H 0.060 0.940 27 H 0.079 0.921 28 H 0.091 0.909 29 H 0.109 0.891 30 H 0.408 0.592 31 H 0.062 0.938 32 H 0.095 0.905 33 H 0.000 1.000 34 H 0.036 0.964 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.906 11.680 5.543 13.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.106 4.106 3 C -0.197 4.197 4 C -0.032 4.032 5 H 0.048 0.952 6 C -0.006 4.006 7 N -0.354 5.354 8 C 0.317 3.683 9 O -0.485 6.485 10 C -0.089 4.089 11 N -0.246 5.246 12 C 0.072 3.928 13 C -0.589 4.589 14 H 0.071 0.929 15 C -0.180 4.180 16 N -0.560 5.560 17 Si 0.772 3.228 18 H -0.194 1.194 19 H -0.209 1.209 20 H -0.203 1.203 21 H 0.060 0.940 22 H 0.092 0.908 23 H 0.072 0.928 24 H 0.074 0.926 25 H 0.066 0.934 26 H 0.079 0.921 27 H 0.098 0.902 28 H 0.109 0.891 29 H 0.127 0.873 30 H 0.245 0.755 31 H 0.080 0.920 32 H 0.114 0.886 33 H 0.019 0.981 34 H 0.054 0.946 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.346 11.213 5.782 13.052 hybrid contribution 1.935 -0.540 -0.574 2.089 sum -1.411 10.673 5.208 11.959 Atomic orbital electron populations 1.21764 0.94028 1.01478 1.01774 1.21056 0.96919 0.96325 0.96335 1.21823 1.00645 0.94347 1.02866 1.21869 0.96769 0.88883 0.95643 0.95187 1.21939 1.02585 0.93950 0.82163 1.45432 1.69592 1.08736 1.11642 1.20270 0.74576 0.82970 0.90511 1.90676 1.53649 1.68155 1.35998 1.22029 1.00160 0.98016 0.88698 1.63087 1.54658 1.02148 1.04730 1.19547 0.94253 0.93202 0.85845 1.21892 0.95024 1.37791 1.04212 0.92904 1.25634 1.01191 0.94736 0.96418 1.70044 1.35801 1.39004 1.11113 0.85684 0.81090 0.77723 0.78256 1.19441 1.20948 1.20284 0.93959 0.90781 0.92787 0.92596 0.93434 0.92131 0.90195 0.89076 0.87297 0.75500 0.92004 0.88650 0.98149 0.94638 0.92683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.66 8.45 71.98 0.61 -3.06 16 2 C -0.09 -2.70 2.16 -10.80 -0.02 -2.73 16 3 C -0.14 -3.22 8.70 71.98 0.63 -2.59 16 4 C 0.08 2.56 1.23 44.86 0.06 2.61 16 5 H 0.03 1.14 6.74 -2.38 -0.02 1.13 16 6 C 0.12 2.81 5.95 86.47 0.51 3.32 16 7 N -0.70 -19.41 5.52 -466.09 -2.57 -21.98 16 8 C 0.53 19.41 7.81 87.68 0.69 20.10 16 9 O -0.60 -25.62 17.82 -3.03 -0.05 -25.67 16 10 C 0.04 1.69 5.43 85.42 0.46 2.16 16 11 N -0.52 -20.63 4.16 -880.19 -3.66 -24.29 16 12 C 0.20 9.59 4.33 85.56 0.37 9.96 16 13 C -0.55 -28.54 6.96 25.60 0.18 -28.36 16 14 H 0.05 2.74 5.87 -2.91 -0.02 2.72 16 15 C 0.02 1.09 5.46 84.65 0.46 1.55 16 16 N -0.92 -52.36 13.29 21.45 0.28 -52.08 16 17 Si 0.95 42.63 29.54 68.60 2.03 44.65 16 18 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 19 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 20 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 21 H 0.04 1.39 6.76 -2.39 -0.02 1.37 16 22 H 0.07 1.60 6.21 -2.39 -0.01 1.59 16 23 H 0.05 1.36 8.14 -2.38 -0.02 1.34 16 24 H 0.06 2.27 5.90 -2.39 -0.01 2.25 16 25 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.08 1.35 7.00 -2.38 -0.02 1.34 16 28 H 0.09 1.96 5.93 -2.39 -0.01 1.95 16 29 H 0.11 1.89 7.14 -2.39 -0.02 1.88 16 30 H 0.41 9.15 8.84 -92.71 -0.82 8.33 16 31 H 0.06 2.72 6.68 -2.39 -0.02 2.70 16 32 H 0.10 3.90 8.14 -2.39 -0.02 3.88 16 33 H 0.00 0.02 8.12 -2.39 -0.02 0.00 16 34 H 0.04 1.81 5.59 -2.39 -0.01 1.80 16 35 H 0.26 14.27 8.31 -92.70 -0.77 13.50 16 Total: -1.00 -63.11 269.79 0.24 -62.87 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: 0.28 Total: 13.54 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: 3.94 Total: 2.96 kcal Atomic # 7 Polarization: -92.40 SS G_CDS: -5.95 Total: -98.34 kcal Atomic # 8 Polarization: -25.62 SS G_CDS: -0.05 Total: -25.67 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.65 kcal Total: -63.11 0.24 -62.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261048173.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.515 kcal (2) G-P(sol) polarization free energy of solvation -63.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds