Wall clock time and date at job start Mon Mar 30 2020 03:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47622 * 2 1 4 4 C 1.52997 * 109.47276 * 120.00177 * 2 1 3 5 5 H 1.09003 * 109.28283 * 60.29063 * 4 2 1 6 6 C 1.52988 * 109.37563 * 179.97438 * 4 2 1 7 7 N 1.47194 * 108.72757 * 170.46642 * 6 4 2 8 8 C 1.46904 * 110.99941 * 54.37234 * 7 6 4 9 9 C 1.50695 * 109.46907 * 169.99892 * 8 7 6 10 10 H 1.07999 * 120.00538 * 359.97438 * 9 8 7 11 11 C 1.37881 * 119.99661 * 179.97438 * 9 8 7 12 12 N 1.31520 * 120.00186 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00030 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.47297 * 89.99863 * 13 11 9 15 15 H 1.48503 * 109.47261 * 330.00044 * 13 11 9 16 16 H 1.48500 * 109.47454 * 210.00037 * 13 11 9 17 17 C 1.46894 * 110.17662 * 291.00510 * 7 6 4 18 18 C 1.50255 * 109.98146 * 50.29502 * 17 7 6 19 19 O 1.21280 * 118.62509 * 162.79857 * 18 17 7 20 20 N 1.33716 * 122.75272 * 342.80399 * 18 17 7 21 21 H 1.08995 * 109.47511 * 180.02562 * 1 2 3 22 22 H 1.09010 * 109.46704 * 300.00148 * 1 2 3 23 23 H 1.09000 * 109.47455 * 59.99639 * 1 2 3 24 24 H 1.09007 * 109.47203 * 239.99980 * 2 1 3 25 25 H 1.08994 * 109.47323 * 180.02562 * 3 2 1 26 26 H 1.09000 * 109.47000 * 300.00640 * 3 2 1 27 27 H 1.09007 * 109.46847 * 59.99763 * 3 2 1 28 28 H 1.09002 * 109.59297 * 50.69871 * 6 4 2 29 29 H 1.08998 * 109.72002 * 290.31430 * 6 4 2 30 30 H 1.09002 * 109.47117 * 49.99472 * 8 7 6 31 31 H 1.09000 * 109.46655 * 289.99805 * 8 7 6 32 32 H 0.97001 * 119.99697 * 359.97438 * 12 11 9 33 33 H 1.08999 * 109.38695 * 170.45618 * 17 7 6 34 34 H 1.09005 * 109.38493 * 290.14467 * 17 7 6 35 35 H 0.96994 * 118.53984 * 181.65883 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6792 -1.7499 1.2434 6 6 3.5699 -0.7205 1.2466 7 7 4.0449 -1.2076 2.5519 8 6 3.4585 -2.5162 2.8707 9 6 4.1458 -3.0932 4.0812 10 1 4.9393 -2.5431 4.5652 11 6 3.7618 -4.3235 4.5710 12 7 2.7952 -4.9933 3.9820 13 14 4.6143 -5.0391 6.0712 14 1 3.9016 -4.6050 7.2997 15 1 6.0189 -4.5595 6.1182 16 1 4.6000 -6.5217 5.9885 17 6 3.7408 -0.2249 3.6006 18 6 2.2957 0.1791 3.5221 19 8 1.7925 0.7262 4.4804 20 7 1.5412 -0.0392 2.4399 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 1.8933 -0.5139 -0.8900 25 1 3.1300 1.4424 -0.0005 26 1 1.6767 1.9563 -0.8899 27 1 1.6767 1.9563 0.8900 28 1 3.9346 0.2930 1.0799 29 1 3.9366 -1.3757 0.4565 30 1 3.5894 -3.1892 2.0232 31 1 2.3952 -2.3968 3.0789 32 1 2.3523 -4.6215 3.2032 33 1 3.9410 -0.6648 4.5776 34 1 4.3702 0.6547 3.4656 35 1 0.6215 0.2689 2.4464 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261070526.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:23 Heat of formation + Delta-G solvation = -42.442396 kcal Electronic energy + Delta-G solvation = -16649.465770 eV Core-core repulsion = 14067.941691 eV Total energy + Delta-G solvation = -2581.524080 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.43051 -37.34014 -35.76971 -32.98041 -32.29586 -29.03325 -27.74752 -27.04368 -24.98148 -23.15236 -21.85483 -20.43811 -18.74770 -17.06306 -16.35775 -16.06257 -15.44217 -14.92403 -14.31261 -14.17449 -13.72042 -13.68036 -13.52330 -12.91991 -12.41350 -12.12439 -11.95282 -11.77940 -11.42601 -11.04446 -10.95618 -10.91984 -10.76414 -10.61598 -10.40260 -10.09422 -9.88180 -8.76022 -8.72799 -8.41845 -7.49854 -6.41876 -4.11619 3.07370 3.44795 3.47824 3.57419 3.63433 4.45843 4.57756 4.71019 4.81091 4.89728 5.10390 5.28448 5.35111 5.42555 5.49620 5.54878 5.70320 5.78215 5.83690 5.91884 5.98501 6.02808 6.17469 6.25806 6.29768 6.81186 6.88918 7.10325 7.53785 7.64942 7.71785 8.17978 8.49027 8.60900 8.80276 9.58796 10.97318 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.036334 B = 0.007980 C = 0.007520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.452501 B = 3507.851934 C = 3722.324967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.104 4.104 3 C -0.148 4.148 4 C 0.109 3.891 5 H 0.077 0.923 6 C 0.038 3.962 7 N -0.518 5.518 8 C 0.175 3.825 9 C -0.594 4.594 10 H 0.059 0.941 11 C 0.016 3.984 12 N -0.911 5.911 13 Si 1.074 2.926 14 H -0.288 1.288 15 H -0.286 1.286 16 H -0.284 1.284 17 C 0.047 3.953 18 C 0.497 3.503 19 O -0.567 6.567 20 N -0.714 5.714 21 H 0.058 0.942 22 H 0.053 0.947 23 H 0.057 0.943 24 H 0.084 0.916 25 H 0.060 0.940 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.024 0.976 31 H -0.010 1.010 32 H 0.266 0.734 33 H 0.122 0.878 34 H 0.094 0.906 35 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.485 9.686 -9.337 13.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.124 4.124 3 C -0.205 4.205 4 C 0.002 3.998 5 H 0.095 0.905 6 C -0.091 4.091 7 N -0.240 5.240 8 C 0.050 3.950 9 C -0.632 4.632 10 H 0.078 0.922 11 C -0.187 4.187 12 N -0.548 5.548 13 Si 0.902 3.098 14 H -0.214 1.214 15 H -0.212 1.212 16 H -0.210 1.210 17 C -0.085 4.085 18 C 0.284 3.716 19 O -0.445 6.445 20 N -0.367 5.367 21 H 0.077 0.923 22 H 0.072 0.928 23 H 0.076 0.924 24 H 0.102 0.898 25 H 0.079 0.921 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.096 0.904 29 H 0.107 0.893 30 H 0.042 0.958 31 H 0.008 0.992 32 H 0.076 0.924 33 H 0.140 0.860 34 H 0.112 0.888 35 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -0.936 8.501 -7.830 11.595 hybrid contribution -1.430 1.444 -1.163 2.342 sum -2.367 9.945 -8.992 13.615 Atomic orbital electron populations 1.21851 0.95153 1.02083 1.01659 1.21437 0.96102 0.96986 0.97835 1.21878 1.01386 0.95607 1.01644 1.21770 0.97447 0.96227 0.84351 0.90486 1.22715 0.90212 1.01553 0.94666 1.62644 1.57816 1.03829 0.99742 1.19981 0.93041 0.84546 0.97427 1.21977 1.21705 1.06266 1.13262 0.92249 1.25859 0.96311 0.94110 1.02466 1.70789 1.22481 1.40226 1.21259 0.83466 0.75397 0.76140 0.74796 1.21434 1.21245 1.20994 1.22366 0.89050 0.96811 1.00232 1.21558 0.91184 0.77341 0.81500 1.90677 1.73995 1.44381 1.35477 1.45724 1.15301 1.60053 1.15654 0.92295 0.92847 0.92363 0.89784 0.92099 0.92794 0.92593 0.90388 0.89346 0.95840 0.99217 0.92420 0.86009 0.88819 0.77376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 8.97 37.16 0.33 -1.19 16 2 C -0.10 -1.14 2.79 -90.62 -0.25 -1.39 16 3 C -0.15 -1.52 8.71 37.16 0.32 -1.20 16 4 C 0.11 1.61 2.09 -68.20 -0.14 1.46 16 5 H 0.08 1.29 7.09 -51.93 -0.37 0.92 16 6 C 0.04 0.59 5.18 -3.67 -0.02 0.57 16 7 N -0.52 -10.51 5.02 -237.55 -1.19 -11.71 16 8 C 0.18 4.32 3.09 -4.98 -0.02 4.30 16 9 C -0.59 -16.55 8.34 -34.44 -0.29 -16.83 16 10 H 0.06 1.65 7.29 -52.49 -0.38 1.27 16 11 C 0.02 0.47 5.46 -17.82 -0.10 0.37 16 12 N -0.91 -27.48 13.65 55.43 0.76 -26.73 16 13 Si 1.07 25.40 29.90 -169.99 -5.08 20.31 16 14 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 15 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 16 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 17 C 0.05 0.92 5.74 -5.19 -0.03 0.89 16 18 C 0.50 10.01 7.06 -11.67 -0.08 9.93 16 19 O -0.57 -13.18 17.82 5.56 0.10 -13.08 16 20 N -0.71 -11.92 4.24 -54.54 -0.23 -12.15 16 21 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 22 H 0.05 0.56 6.50 -51.92 -0.34 0.22 16 23 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.08 0.83 8.14 -51.92 -0.42 0.41 16 25 H 0.06 0.62 6.23 -51.93 -0.32 0.30 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.65 7.62 -51.92 -0.40 0.25 16 28 H 0.08 1.07 5.92 -51.93 -0.31 0.76 16 29 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 30 H 0.02 0.61 7.95 -51.93 -0.41 0.19 16 31 H -0.01 -0.26 6.10 -51.93 -0.32 -0.57 16 32 H 0.27 7.94 7.22 -40.82 -0.29 7.64 16 33 H 0.12 2.72 6.69 -51.93 -0.35 2.37 16 34 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 35 H 0.39 6.04 6.84 -40.82 -0.28 5.76 16 LS Contribution 273.67 15.07 4.12 4.12 Total: -1.00 -32.08 273.67 -6.89 -38.97 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -5.10 Total: 3.34 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: -0.27 Total: -3.09 kcal Atomic # 7 Polarization: -49.91 SS G_CDS: -0.67 Total: -50.58 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: 0.10 Total: -13.08 kcal Atomic # 14 Polarization: 25.40 SS G_CDS: -5.08 Total: 20.31 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -32.08 -6.89 -38.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261070526.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.474 kcal (2) G-P(sol) polarization free energy of solvation -32.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds