Wall clock time and date at job start Mon Mar 30 2020 03:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47522 * 2 1 4 4 C 1.53000 * 109.47076 * 120.00735 * 2 1 3 5 5 H 1.08996 * 109.27846 * 300.28209 * 4 2 1 6 6 C 1.52821 * 109.47384 * 180.75678 * 4 2 1 7 7 N 1.47184 * 108.86539 * 189.76426 * 6 4 2 8 8 C 1.46899 * 111.00222 * 192.21339 * 7 6 4 9 9 C 1.50705 * 109.47361 * 171.06228 * 8 7 6 10 10 H 1.08004 * 119.99935 * 0.02562 * 9 8 7 11 11 C 1.37881 * 119.99937 * 180.02562 * 9 8 7 12 12 N 1.31516 * 119.99601 * 179.97438 * 11 9 8 13 13 Si 1.86794 * 120.00054 * 0.02562 * 11 9 8 14 14 H 1.48504 * 109.47341 * 89.99891 * 13 11 9 15 15 H 1.48498 * 109.47094 * 209.99650 * 13 11 9 16 16 H 1.48502 * 109.47303 * 330.00009 * 13 11 9 17 17 C 1.46903 * 110.17511 * 68.85011 * 7 6 4 18 18 C 1.50259 * 109.97754 * 309.70203 * 17 7 6 19 19 O 1.21285 * 118.62303 * 197.20298 * 18 17 7 20 20 N 1.33717 * 122.75050 * 17.17403 * 18 17 7 21 21 H 1.09004 * 109.46701 * 299.99911 * 1 2 3 22 22 H 1.08997 * 109.47093 * 59.99469 * 1 2 3 23 23 H 1.09000 * 109.47225 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46701 * 240.00089 * 2 1 3 25 25 H 1.08991 * 109.47043 * 180.02562 * 3 2 1 26 26 H 1.09002 * 109.47024 * 300.00692 * 3 2 1 27 27 H 1.09001 * 109.46374 * 60.00080 * 3 2 1 28 28 H 1.09001 * 109.65404 * 69.87620 * 6 4 2 29 29 H 1.09004 * 109.53245 * 309.58045 * 6 4 2 30 30 H 1.09001 * 109.47593 * 291.06301 * 8 7 6 31 31 H 1.08999 * 109.47217 * 51.06459 * 8 7 6 32 32 H 0.97003 * 119.99825 * 179.97438 * 12 11 9 33 33 H 1.08999 * 109.38688 * 189.54575 * 17 7 6 34 34 H 1.08999 * 109.30165 * 69.80421 * 17 7 6 35 35 H 0.97001 * 118.53315 * 178.33218 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 1.2491 5 1 1.6708 -0.2082 2.1370 6 6 3.5681 -0.7050 1.2588 7 7 4.0469 -1.5956 2.3283 8 6 5.4819 -1.3996 2.5736 9 6 5.8886 -2.1592 3.8101 10 1 5.1545 -2.7307 4.3586 11 6 7.1979 -2.1245 4.2410 12 7 7.5526 -2.7870 5.3204 13 14 8.4674 -1.1355 3.2927 14 1 8.5156 0.2495 3.8265 15 1 9.8016 -1.7701 3.4419 16 1 8.0943 -1.0993 1.8558 17 6 3.7571 -2.9954 1.9897 18 6 2.3148 -3.1397 1.5936 19 8 1.8218 -4.2478 1.5886 20 7 1.5521 -2.0975 1.2470 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 3.1300 1.4424 -0.0005 26 1 1.6767 1.9564 -0.8899 27 1 1.6768 1.9562 0.8900 28 1 3.9227 0.3094 1.4417 29 1 3.9424 -1.0551 0.2967 30 1 6.0501 -1.7663 1.7187 31 1 5.6846 -0.3382 2.7162 32 1 8.4738 -2.7629 5.6234 33 1 3.9594 -3.6263 2.8552 34 1 4.3928 -3.3044 1.1601 35 1 0.6350 -2.2636 0.9782 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261070527.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:25 Heat of formation + Delta-G solvation = -39.674084 kcal Electronic energy + Delta-G solvation = -16196.208394 eV Core-core repulsion = 13614.804357 eV Total energy + Delta-G solvation = -2581.404037 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.15183 -37.40242 -35.94101 -33.16500 -32.37348 -29.18978 -28.40853 -27.16943 -25.24512 -23.08139 -21.10530 -20.28300 -18.97202 -17.22409 -17.01810 -16.08403 -15.14186 -14.88838 -14.51869 -14.05155 -14.02825 -13.79131 -13.25339 -12.82843 -12.47807 -12.37757 -12.30780 -11.92308 -11.72083 -11.35453 -11.11433 -10.95938 -10.91691 -10.68970 -10.45986 -9.94870 -9.43364 -9.35899 -8.85145 -8.63304 -7.67607 -6.10766 -4.10013 2.98284 3.23517 3.31363 3.31780 3.51674 4.31158 4.35999 4.67076 4.73302 4.87275 5.06008 5.21161 5.28520 5.29939 5.46894 5.55038 5.64480 5.70050 5.74953 5.89914 5.91442 6.00230 6.09146 6.19238 6.32076 6.65143 6.78796 7.01082 7.39943 7.57315 7.60973 7.79076 8.53086 8.54420 8.97232 9.49109 11.02092 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.031486 B = 0.007699 C = 0.006464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.059298 B = 3636.051553 C = 4330.740166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.107 4.107 3 C -0.147 4.147 4 C 0.151 3.849 5 H 0.081 0.919 6 C 0.035 3.965 7 N -0.521 5.521 8 C 0.161 3.839 9 C -0.517 4.517 10 H 0.082 0.918 11 C 0.071 3.929 12 N -0.896 5.896 13 Si 0.875 3.125 14 H -0.275 1.275 15 H -0.285 1.285 16 H -0.268 1.268 17 C 0.048 3.952 18 C 0.527 3.473 19 O -0.564 6.564 20 N -0.716 5.716 21 H 0.059 0.941 22 H 0.058 0.942 23 H 0.053 0.947 24 H 0.074 0.926 25 H 0.062 0.938 26 H 0.056 0.944 27 H 0.060 0.940 28 H 0.091 0.909 29 H 0.035 0.965 30 H -0.007 1.007 31 H 0.030 0.970 32 H 0.265 0.735 33 H 0.124 0.876 34 H 0.064 0.936 35 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.314 8.550 -11.644 17.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.127 4.127 3 C -0.205 4.205 4 C 0.045 3.955 5 H 0.099 0.901 6 C -0.094 4.094 7 N -0.246 5.246 8 C 0.036 3.964 9 C -0.555 4.555 10 H 0.100 0.900 11 C -0.132 4.132 12 N -0.534 5.534 13 Si 0.702 3.298 14 H -0.201 1.201 15 H -0.211 1.211 16 H -0.193 1.193 17 C -0.082 4.082 18 C 0.314 3.686 19 O -0.443 6.443 20 N -0.369 5.369 21 H 0.078 0.922 22 H 0.077 0.923 23 H 0.072 0.928 24 H 0.093 0.907 25 H 0.081 0.919 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.109 0.891 29 H 0.053 0.947 30 H 0.011 0.989 31 H 0.048 0.952 32 H 0.075 0.925 33 H 0.142 0.858 34 H 0.081 0.919 35 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -10.415 8.071 -10.998 17.164 hybrid contribution 0.915 0.367 -1.236 1.581 sum -9.500 8.439 -12.234 17.639 Atomic orbital electron populations 1.21856 0.94930 1.01654 1.02208 1.21492 0.96173 0.96934 0.98124 1.21842 1.01671 0.94905 1.02070 1.21088 0.94719 0.81860 0.97792 0.90077 1.22528 0.93134 0.99597 0.94187 1.62492 1.20763 1.02690 1.38641 1.20266 0.81802 0.97423 0.96949 1.20999 0.95310 1.30350 1.08834 0.89991 1.24896 0.98177 0.95268 0.94812 1.69893 1.18283 1.42018 1.23216 0.86868 0.81367 0.80709 0.80845 1.20067 1.21098 1.19282 1.22182 0.90190 0.93048 1.02814 1.20581 0.89374 0.83618 0.74979 1.90709 1.73809 1.25131 1.54645 1.45760 1.15407 1.06913 1.68859 0.92189 0.92332 0.92781 0.90731 0.91944 0.92483 0.92127 0.89067 0.94691 0.98920 0.95170 0.92524 0.85843 0.91855 0.77171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 8.98 37.16 0.33 -0.88 16 2 C -0.11 -1.03 2.68 -90.62 -0.24 -1.27 16 3 C -0.15 -1.24 8.83 37.16 0.33 -0.91 16 4 C 0.15 1.92 2.85 -68.29 -0.19 1.73 16 5 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 6 C 0.03 0.52 4.19 -3.76 -0.02 0.51 16 7 N -0.52 -10.33 4.73 -237.65 -1.12 -11.45 16 8 C 0.16 3.70 3.78 -4.97 -0.02 3.68 16 9 C -0.52 -14.25 9.15 -34.44 -0.32 -14.56 16 10 H 0.08 2.48 7.34 -52.48 -0.39 2.10 16 11 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 12 N -0.90 -26.99 13.96 55.43 0.77 -26.22 16 13 Si 0.87 20.74 27.47 -169.99 -4.67 16.07 16 14 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 15 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 16 H -0.27 -6.06 6.54 56.52 0.37 -5.69 16 17 C 0.05 0.95 5.26 -5.19 -0.03 0.93 16 18 C 0.53 9.77 7.81 -11.67 -0.09 9.68 16 19 O -0.56 -12.14 17.83 5.55 0.10 -12.04 16 20 N -0.72 -10.44 5.17 -54.63 -0.28 -10.73 16 21 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 22 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 23 H 0.05 0.45 6.51 -51.93 -0.34 0.11 16 24 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.06 0.55 6.65 -51.93 -0.35 0.21 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.09 1.27 6.76 -51.93 -0.35 0.92 16 29 H 0.03 0.52 8.05 -51.93 -0.42 0.10 16 30 H -0.01 -0.16 7.11 -51.93 -0.37 -0.53 16 31 H 0.03 0.68 7.36 -51.93 -0.38 0.29 16 32 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 33 H 0.12 2.74 7.04 -51.93 -0.37 2.37 16 34 H 0.06 1.22 8.05 -51.93 -0.42 0.80 16 35 H 0.39 5.02 6.87 -40.82 -0.28 4.74 16 LS Contribution 277.82 15.07 4.19 4.19 Total: -1.00 -31.43 277.82 -6.71 -38.14 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -5.36 Total: 1.24 kcal Atomic # 6 Polarization: 1.13 SS G_CDS: -0.34 Total: 0.79 kcal Atomic # 7 Polarization: -47.77 SS G_CDS: -0.63 Total: -48.40 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: 0.10 Total: -12.04 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.67 Total: 16.07 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -31.43 -6.71 -38.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261070527.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.530 kcal (2) G-P(sol) polarization free energy of solvation -31.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds