Wall clock time and date at job start Mon Mar 30 2020 02:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86798 * 120.00059 * 2 1 4 4 H 1.48494 * 109.47182 * 270.00187 * 3 2 1 5 5 H 1.48498 * 109.47091 * 30.00131 * 3 2 1 6 6 H 1.48498 * 109.46997 * 149.99941 * 3 2 1 7 7 C 1.38956 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99687 * 180.02562 * 7 2 1 9 9 N 1.37099 * 119.99908 * 359.97438 * 7 2 1 10 10 C 1.34776 * 119.99848 * 179.97438 * 9 7 2 11 11 O 1.21296 * 120.00026 * 0.02562 * 10 9 7 12 12 C 1.50698 * 120.00035 * 179.97438 * 10 9 7 13 13 C 1.53006 * 109.47184 * 180.02562 * 12 10 9 14 14 H 1.08997 * 109.47395 * 305.00741 * 13 12 10 15 15 C 1.52999 * 109.46811 * 65.00358 * 13 12 10 16 16 C 1.52996 * 109.47179 * 180.02562 * 15 13 12 17 17 C 1.53002 * 109.47201 * 300.00021 * 16 15 13 18 18 C 1.53003 * 109.46897 * 59.99589 * 17 16 15 19 19 C 1.52996 * 109.47531 * 300.00209 * 18 17 16 20 20 H 1.09001 * 109.47165 * 300.00244 * 19 18 17 21 21 N 1.46895 * 109.47176 * 180.02562 * 19 18 17 22 22 H 0.96996 * 120.00054 * 0.02562 * 1 2 3 23 23 H 0.96998 * 120.00190 * 359.97438 * 9 7 2 24 24 H 1.09001 * 109.46665 * 60.00498 * 12 10 9 25 25 H 1.08993 * 109.47304 * 300.00054 * 12 10 9 26 26 H 1.09009 * 109.47170 * 300.00068 * 15 13 12 27 27 H 1.09001 * 109.47273 * 59.99848 * 15 13 12 28 28 H 1.08998 * 109.47611 * 180.02562 * 16 15 13 29 29 H 1.09001 * 109.47165 * 59.99753 * 16 15 13 30 30 H 1.08997 * 109.47219 * 300.00244 * 17 16 15 31 31 H 1.09002 * 109.47423 * 179.97438 * 17 16 15 32 32 H 1.09001 * 109.47183 * 179.97438 * 18 17 16 33 33 H 1.09001 * 109.47096 * 60.00495 * 18 17 16 34 34 H 1.00893 * 111.00508 * 59.99951 * 21 19 18 35 35 H 1.00905 * 110.99954 * 183.95793 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4000 5 1 1.4456 2.6526 0.7001 6 1 3.5456 1.4401 0.7000 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0001 9 7 1.3233 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0016 11 8 3.2102 -3.5579 -0.0021 12 6 1.2437 -4.8630 -0.0010 13 6 2.2380 -6.0260 -0.0018 14 1 2.9216 -5.9191 -0.8440 15 6 3.0337 -6.0174 1.3050 16 6 4.0284 -7.1799 1.3041 17 6 3.2680 -8.5017 1.1786 18 6 2.4722 -8.5101 -0.1282 19 6 1.4776 -7.3476 -0.1273 20 1 0.7941 -7.4549 0.7150 21 7 0.7132 -7.3562 -1.3817 22 1 -0.4850 0.8400 -0.0004 23 1 0.3534 -2.3907 0.0002 24 1 0.6161 -4.9205 -0.8903 25 1 0.6181 -4.9209 0.8896 26 1 3.5758 -5.0759 1.3942 27 1 2.3501 -6.1243 2.1473 28 1 4.5949 -7.1742 2.2352 29 1 4.7118 -7.0726 0.4618 30 1 2.5845 -8.6090 2.0208 31 1 3.9766 -9.3299 1.1774 32 1 1.9309 -9.4519 -0.2179 33 1 3.1557 -8.4028 -0.9705 34 1 0.2018 -8.2194 -1.4877 35 1 0.0946 -6.5607 -1.4336 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307595141.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:34 Heat of formation + Delta-G solvation = -68.648999 kcal Electronic energy + Delta-G solvation = -16006.384248 eV Core-core repulsion = 13423.723764 eV Total energy + Delta-G solvation = -2582.660483 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.27562 -37.55331 -33.96769 -33.51992 -31.83111 -31.14700 -28.38821 -26.65599 -24.43716 -21.99880 -21.08892 -19.46375 -18.92561 -17.77622 -16.16711 -15.30611 -15.05156 -14.70676 -14.41021 -14.36618 -13.92926 -13.55240 -13.35369 -12.39450 -12.21417 -11.92979 -11.69008 -11.50177 -11.32825 -11.16325 -10.98570 -10.62499 -10.37549 -10.22206 -10.16864 -9.92918 -9.81701 -9.42297 -8.56593 -8.24410 -7.92105 -6.38972 -3.79446 3.19589 3.27888 3.33884 3.96171 4.19994 4.53828 4.81232 4.90955 5.12099 5.23099 5.33023 5.43943 5.47982 5.62467 5.70675 5.73035 5.81485 5.92431 6.04053 6.13627 6.18793 6.30163 6.32988 6.48923 6.52814 6.60825 6.87160 6.96726 7.30882 7.53915 7.57886 8.09696 8.64965 9.21091 9.59109 10.10879 10.78914 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.049456 B = 0.005946 C = 0.005496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.026260 B = 4708.094156 C = 5093.785465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.021 3.979 3 Si 0.929 3.071 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.300 4.300 8 H 0.103 0.897 9 N -0.565 5.565 10 C 0.444 3.556 11 O -0.591 6.591 12 C -0.130 4.130 13 C -0.056 4.056 14 H 0.083 0.917 15 C -0.119 4.119 16 C -0.117 4.117 17 C -0.118 4.118 18 C -0.109 4.109 19 C 0.094 3.906 20 H 0.030 0.970 21 N -0.849 5.849 22 H 0.271 0.729 23 H 0.392 0.608 24 H 0.076 0.924 25 H 0.071 0.929 26 H 0.093 0.907 27 H 0.048 0.952 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.053 0.947 33 H 0.069 0.931 34 H 0.334 0.666 35 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.112 -13.766 1.467 13.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.180 4.180 3 Si 0.756 3.244 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.194 1.194 7 C -0.429 4.429 8 H 0.120 0.880 9 N -0.201 5.201 10 C 0.230 3.770 11 O -0.477 6.477 12 C -0.171 4.171 13 C -0.075 4.075 14 H 0.101 0.899 15 C -0.157 4.157 16 C -0.155 4.155 17 C -0.156 4.156 18 C -0.147 4.147 19 C -0.017 4.017 20 H 0.048 0.952 21 N -0.380 5.380 22 H 0.081 0.919 23 H 0.225 0.775 24 H 0.095 0.905 25 H 0.089 0.911 26 H 0.112 0.888 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.146 0.854 35 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 1.266 -13.525 1.115 13.630 hybrid contribution -1.232 0.814 0.590 1.590 sum 0.034 -12.711 1.705 12.825 Atomic orbital electron populations 1.69612 1.05941 1.28080 1.50804 1.25257 0.95616 0.99704 0.97410 0.85869 0.79224 0.80889 0.78377 1.20421 1.20969 1.19450 1.19721 0.93370 0.82403 1.47424 0.87964 1.41931 1.09166 1.04747 1.64209 1.19908 0.88313 0.84913 0.83853 1.90470 1.13966 1.87266 1.55974 1.21587 0.98898 0.94528 1.02077 1.20808 0.96315 0.90902 0.99451 0.89881 1.21708 0.97884 1.00029 0.96047 1.21523 0.98165 0.94338 1.01450 1.21538 0.98806 0.97856 0.97363 1.21512 0.98044 0.96902 0.98244 1.21408 0.94503 0.95987 0.89775 0.95160 1.58758 1.33827 1.07535 1.37863 0.91931 0.77516 0.90537 0.91068 0.88836 0.93320 0.92504 0.91941 0.92436 0.92363 0.92785 0.91199 0.85412 0.84262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.86 13.05 55.50 0.72 -24.13 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 21.27 29.55 -169.99 -5.02 16.25 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.30 -8.45 9.68 -14.93 -0.14 -8.60 16 8 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 9 N -0.56 -14.52 5.29 -10.96 -0.06 -14.57 16 10 C 0.44 10.52 7.50 -10.99 -0.08 10.44 16 11 O -0.59 -15.79 13.54 5.54 0.08 -15.72 16 12 C -0.13 -2.32 4.98 -27.88 -0.14 -2.46 16 13 C -0.06 -0.91 1.55 -90.62 -0.14 -1.05 16 14 H 0.08 1.58 7.95 -51.93 -0.41 1.17 16 15 C -0.12 -1.94 4.94 -26.73 -0.13 -2.07 16 16 C -0.12 -1.60 5.92 -26.73 -0.16 -1.75 16 17 C -0.12 -1.35 5.92 -26.73 -0.16 -1.51 16 18 C -0.11 -1.30 5.50 -26.73 -0.15 -1.45 16 19 C 0.09 1.24 2.76 -67.72 -0.19 1.06 16 20 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 21 N -0.85 -10.39 9.22 -4.67 -0.04 -10.43 16 22 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 23 H 0.39 9.67 7.90 -40.82 -0.32 9.35 16 24 H 0.08 1.25 6.33 -51.93 -0.33 0.92 16 25 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 26 H 0.09 1.87 5.95 -51.92 -0.31 1.56 16 27 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.33 3.31 9.04 -39.30 -0.36 2.96 16 35 H 0.34 4.13 6.93 -39.29 -0.27 3.85 16 LS Contribution 279.09 15.07 4.21 4.21 Total: -1.00 -30.16 279.09 -6.82 -36.98 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: -5.32 Total: 14.33 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: -1.39 Total: -6.91 kcal Atomic # 7 Polarization: -49.76 SS G_CDS: 0.62 Total: -49.14 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: 0.08 Total: -15.72 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -30.16 -6.82 -36.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307595141.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.668 kcal (2) G-P(sol) polarization free energy of solvation -30.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds