Wall clock time and date at job start Mon Mar 30 2020 02:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86798 * 120.00059 * 2 1 4 4 H 1.48494 * 109.47182 * 270.00187 * 3 2 1 5 5 H 1.48498 * 109.47091 * 30.00131 * 3 2 1 6 6 H 1.48498 * 109.46997 * 149.99941 * 3 2 1 7 7 C 1.38956 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99687 * 180.02562 * 7 2 1 9 9 N 1.37099 * 119.99908 * 359.97438 * 7 2 1 10 10 C 1.34776 * 119.99848 * 179.97438 * 9 7 2 11 11 O 1.21296 * 120.00026 * 0.02562 * 10 9 7 12 12 C 1.50698 * 120.00035 * 179.97438 * 10 9 7 13 13 C 1.53006 * 109.47184 * 180.02562 * 12 10 9 14 14 H 1.08997 * 109.47395 * 305.00741 * 13 12 10 15 15 C 1.52999 * 109.46811 * 65.00358 * 13 12 10 16 16 C 1.52996 * 109.47179 * 180.02562 * 15 13 12 17 17 C 1.53002 * 109.47201 * 300.00021 * 16 15 13 18 18 C 1.53003 * 109.46897 * 59.99589 * 17 16 15 19 19 C 1.52996 * 109.47531 * 300.00209 * 18 17 16 20 20 H 1.09001 * 109.47165 * 300.00244 * 19 18 17 21 21 N 1.46895 * 109.47176 * 180.02562 * 19 18 17 22 22 H 0.96996 * 120.00054 * 0.02562 * 1 2 3 23 23 H 0.96998 * 120.00190 * 359.97438 * 9 7 2 24 24 H 1.09001 * 109.46665 * 60.00498 * 12 10 9 25 25 H 1.08993 * 109.47304 * 300.00054 * 12 10 9 26 26 H 1.09009 * 109.47170 * 300.00068 * 15 13 12 27 27 H 1.09001 * 109.47273 * 59.99848 * 15 13 12 28 28 H 1.08998 * 109.47611 * 180.02562 * 16 15 13 29 29 H 1.09001 * 109.47165 * 59.99753 * 16 15 13 30 30 H 1.08997 * 109.47219 * 300.00244 * 17 16 15 31 31 H 1.09002 * 109.47423 * 179.97438 * 17 16 15 32 32 H 1.09001 * 109.47183 * 179.97438 * 18 17 16 33 33 H 1.09001 * 109.47096 * 60.00495 * 18 17 16 34 34 H 1.00893 * 111.00508 * 59.99951 * 21 19 18 35 35 H 1.00905 * 110.99954 * 183.95793 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4000 5 1 1.4456 2.6526 0.7001 6 1 3.5456 1.4401 0.7000 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0001 9 7 1.3233 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0016 11 8 3.2102 -3.5579 -0.0021 12 6 1.2437 -4.8630 -0.0010 13 6 2.2380 -6.0260 -0.0018 14 1 2.9216 -5.9191 -0.8440 15 6 3.0337 -6.0174 1.3050 16 6 4.0284 -7.1799 1.3041 17 6 3.2680 -8.5017 1.1786 18 6 2.4722 -8.5101 -0.1282 19 6 1.4776 -7.3476 -0.1273 20 1 0.7941 -7.4549 0.7150 21 7 0.7132 -7.3562 -1.3817 22 1 -0.4850 0.8400 -0.0004 23 1 0.3534 -2.3907 0.0002 24 1 0.6161 -4.9205 -0.8903 25 1 0.6181 -4.9209 0.8896 26 1 3.5758 -5.0759 1.3942 27 1 2.3501 -6.1243 2.1473 28 1 4.5949 -7.1742 2.2352 29 1 4.7118 -7.0726 0.4618 30 1 2.5845 -8.6090 2.0208 31 1 3.9766 -9.3299 1.1774 32 1 1.9309 -9.4519 -0.2179 33 1 3.1557 -8.4028 -0.9705 34 1 0.2018 -8.2194 -1.4877 35 1 0.0946 -6.5607 -1.4336 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307595141.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:34 Heat of formation + Delta-G solvation = -90.429566 kcal Electronic energy + Delta-G solvation = -16007.328724 eV Core-core repulsion = 13423.723764 eV Total energy + Delta-G solvation = -2583.604959 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.75850 -39.16000 -35.99567 -34.57685 -33.35264 -33.02465 -29.56115 -28.11376 -26.27846 -23.23102 -22.27956 -20.86168 -20.51408 -19.80784 -17.80597 -16.67847 -16.41020 -16.25871 -15.89664 -15.84401 -15.37139 -14.97465 -14.80867 -13.97579 -13.57551 -13.46139 -13.19119 -12.93771 -12.73774 -12.59291 -12.42111 -12.25842 -12.11317 -11.79846 -11.52126 -11.39732 -11.08276 -10.99243 -10.17500 -9.98343 -9.51673 -8.46943 -5.95533 1.37196 1.40464 1.53415 2.07050 2.29785 3.20424 3.22446 3.56016 3.78897 3.92734 4.08686 4.27163 4.36343 4.39858 4.51396 4.54142 4.60890 4.70658 4.80242 4.85766 5.04569 5.15930 5.24599 5.34448 5.35682 5.38131 5.40843 5.58477 5.64411 6.00981 6.33779 6.60011 6.69567 7.12752 7.57351 8.13406 8.70661 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.049456 B = 0.005946 C = 0.005496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.026260 B = 4708.094156 C = 5093.785465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.013 4.013 3 Si 0.993 3.007 4 H -0.271 1.271 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.335 4.335 8 H 0.078 0.922 9 N -0.576 5.576 10 C 0.439 3.561 11 O -0.626 6.626 12 C -0.119 4.119 13 C -0.051 4.051 14 H 0.049 0.951 15 C -0.118 4.118 16 C -0.115 4.115 17 C -0.111 4.111 18 C -0.107 4.107 19 C 0.102 3.898 20 H 0.045 0.955 21 N -0.856 5.856 22 H 0.277 0.723 23 H 0.395 0.605 24 H 0.096 0.904 25 H 0.093 0.907 26 H 0.048 0.952 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.047 0.953 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.055 0.945 34 H 0.351 0.649 35 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.059 -15.046 1.809 15.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.213 4.213 3 Si 0.816 3.184 4 H -0.196 1.196 5 H -0.194 1.194 6 H -0.198 1.198 7 C -0.465 4.465 8 H 0.096 0.904 9 N -0.212 5.212 10 C 0.228 3.772 11 O -0.513 6.513 12 C -0.159 4.159 13 C -0.071 4.071 14 H 0.068 0.932 15 C -0.156 4.156 16 C -0.153 4.153 17 C -0.149 4.149 18 C -0.145 4.145 19 C -0.009 4.009 20 H 0.063 0.937 21 N -0.389 5.389 22 H 0.087 0.913 23 H 0.229 0.771 24 H 0.114 0.886 25 H 0.112 0.888 26 H 0.067 0.933 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.066 0.934 30 H 0.089 0.911 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.073 0.927 34 H 0.165 0.835 35 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 0.293 -14.830 1.451 14.904 hybrid contribution -0.920 1.189 0.474 1.577 sum -0.627 -13.641 1.925 13.790 Atomic orbital electron populations 1.69672 1.06834 1.29260 1.50479 1.26040 0.96547 1.02406 0.96309 0.84933 0.77875 0.76909 0.78652 1.19646 1.19435 1.19825 1.19684 0.92679 0.84225 1.49892 0.90440 1.42011 1.09254 1.04846 1.65111 1.20982 0.88267 0.86290 0.81696 1.90455 1.15927 1.88071 1.56860 1.21586 0.98981 0.91386 1.03995 1.20754 0.95768 0.92427 0.98114 0.93248 1.21628 0.98383 0.99077 0.96542 1.21500 0.97641 0.94755 1.01399 1.21509 0.99122 0.96700 0.97569 1.21516 0.97693 0.97377 0.97940 1.21290 0.94740 0.94130 0.90741 0.93719 1.58703 1.34279 1.08561 1.37386 0.91316 0.77097 0.88584 0.88843 0.93340 0.92036 0.91533 0.93386 0.91131 0.90401 0.90278 0.92661 0.83550 0.84170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.51 13.05 21.66 0.28 -50.23 16 2 C -0.01 -0.73 5.50 84.93 0.47 -0.27 16 3 Si 0.99 43.65 29.55 68.60 2.03 45.68 16 4 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 5 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 6 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 7 C -0.34 -19.47 9.68 84.04 0.81 -18.66 16 8 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 9 N -0.58 -30.32 5.29 -306.98 -1.62 -31.94 16 10 C 0.44 21.40 7.50 87.66 0.66 22.05 16 11 O -0.63 -35.03 13.54 -3.08 -0.04 -35.07 16 12 C -0.12 -4.18 4.98 29.85 0.15 -4.03 16 13 C -0.05 -1.66 1.55 -10.79 -0.02 -1.68 16 14 H 0.05 1.93 7.95 -2.39 -0.02 1.91 16 15 C -0.12 -3.87 4.94 30.59 0.15 -3.72 16 16 C -0.12 -3.05 5.92 30.59 0.18 -2.87 16 17 C -0.11 -2.23 5.92 30.60 0.18 -2.05 16 18 C -0.11 -2.26 5.50 30.59 0.17 -2.09 16 19 C 0.10 2.44 2.76 44.91 0.12 2.57 16 20 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 21 N -0.86 -18.89 9.22 -168.69 -1.56 -20.44 16 22 H 0.28 14.20 8.31 -92.71 -0.77 13.43 16 23 H 0.40 19.80 7.90 -92.71 -0.73 19.07 16 24 H 0.10 3.01 6.33 -2.39 -0.02 2.99 16 25 H 0.09 2.90 8.14 -2.39 -0.02 2.88 16 26 H 0.05 2.02 5.95 -2.38 -0.01 2.01 16 27 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.07 1.27 8.14 -2.39 -0.02 1.26 16 31 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.35 5.85 9.04 -89.70 -0.81 5.04 16 35 H 0.34 7.47 6.93 -89.69 -0.62 6.85 16 Total: -1.00 -66.55 279.09 0.91 -65.64 By element: Atomic # 1 Polarization: 38.16 SS G_CDS: -1.06 Total: 37.10 kcal Atomic # 6 Polarization: -13.61 SS G_CDS: 2.88 Total: -10.73 kcal Atomic # 7 Polarization: -99.72 SS G_CDS: -2.90 Total: -102.62 kcal Atomic # 8 Polarization: -35.03 SS G_CDS: -0.04 Total: -35.07 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -66.55 0.91 -65.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307595141.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.791 kcal (2) G-P(sol) polarization free energy of solvation -66.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds