Wall clock time and date at job start Mon Mar 30 2020 02:40:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31407 * 1
3 3 Si 1.86805 * 120.00045 * 2 1
4 4 H 1.48493 * 109.47348 * 270.00439 * 3 2 1
5 5 H 1.48497 * 109.46731 * 30.00751 * 3 2 1
6 6 H 1.48506 * 109.46921 * 150.00120 * 3 2 1
7 7 C 1.38952 * 120.00135 * 180.02562 * 2 1 3
8 8 H 1.07999 * 119.99779 * 179.97438 * 7 2 1
9 9 N 1.37091 * 119.99659 * 359.97438 * 7 2 1
10 10 C 1.34784 * 119.99876 * 180.02562 * 9 7 2
11 11 O 1.21284 * 119.99758 * 0.02562 * 10 9 7
12 12 C 1.50697 * 119.99940 * 180.02562 * 10 9 7
13 13 C 1.52998 * 109.47059 * 180.02562 * 12 10 9
14 14 H 1.09006 * 109.47488 * 305.00292 * 13 12 10
15 15 C 1.52998 * 109.47034 * 64.99917 * 13 12 10
16 16 C 1.53006 * 109.46946 * 180.02562 * 15 13 12
17 17 C 1.52998 * 109.47064 * 299.99602 * 16 15 13
18 18 C 1.53008 * 109.46791 * 60.00410 * 17 16 15
19 19 C 1.52998 * 109.47070 * 299.99820 * 18 17 16
20 20 H 1.08995 * 109.47028 * 179.97438 * 19 18 17
21 21 N 1.46905 * 109.47084 * 299.99945 * 19 18 17
22 22 H 0.97002 * 120.00089 * 359.97438 * 1 2 3
23 23 H 0.96999 * 120.00386 * 0.02562 * 9 7 2
24 24 H 1.08997 * 109.47101 * 60.00233 * 12 10 9
25 25 H 1.08993 * 109.47105 * 300.00005 * 12 10 9
26 26 H 1.09004 * 109.47281 * 60.00319 * 15 13 12
27 27 H 1.09001 * 109.47245 * 299.99776 * 15 13 12
28 28 H 1.09004 * 109.46991 * 180.02562 * 16 15 13
29 29 H 1.08999 * 109.47342 * 60.00299 * 16 15 13
30 30 H 1.08999 * 109.47610 * 300.00533 * 17 16 15
31 31 H 1.09002 * 109.47111 * 180.02562 * 17 16 15
32 32 H 1.09001 * 109.47080 * 179.97438 * 18 17 16
33 33 H 1.08999 * 109.46943 * 59.99715 * 18 17 16
34 34 H 1.00901 * 110.99869 * 300.00384 * 21 19 18
35 35 H 1.00896 * 110.99543 * 63.95506 * 21 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3141 0.0000 0.0000
3 14 2.2481 1.6178 0.0000
4 1 2.4955 2.0465 -1.4000
5 1 1.4456 2.6526 0.7002
6 1 3.5457 1.4401 0.7000
7 6 2.0089 -1.2033 -0.0005
8 1 3.0889 -1.2033 -0.0010
9 7 1.3234 -2.3906 -0.0005
10 6 1.9973 -3.5578 -0.0005
11 8 3.2101 -3.5578 -0.0001
12 6 1.2438 -4.8629 -0.0011
13 6 2.2380 -6.0258 -0.0004
14 1 2.9228 -5.9190 -0.8416
15 6 3.0317 -6.0173 1.3076
16 6 4.0264 -7.1799 1.3081
17 6 3.2662 -8.5016 1.1816
18 6 2.4724 -8.5101 -0.1265
19 6 1.4777 -7.3475 -0.1270
20 1 0.9126 -7.3533 -1.0590
21 7 0.5549 -7.4921 1.0068
22 1 -0.4850 0.8401 0.0004
23 1 0.3534 -2.3906 -0.0005
24 1 0.6175 -4.9204 -0.8914
25 1 0.6168 -4.9208 0.8885
26 1 2.3469 -6.1242 2.1489
27 1 3.5737 -5.0759 1.3976
28 1 4.5916 -7.1741 2.2401
29 1 4.7112 -7.0726 0.4668
30 1 2.5814 -8.6089 2.0228
31 1 3.9747 -9.3298 1.1824
32 1 1.9311 -9.4519 -0.2169
33 1 3.1571 -8.4028 -0.9677
34 1 0.0405 -8.3581 0.9462
35 1 1.0475 -7.4249 1.8848
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000307595144.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:40:42
Heat of formation + Delta-G solvation = -66.945766 kcal
Electronic energy + Delta-G solvation = -16087.341463 eV
Core-core repulsion = 13504.754837 eV
Total energy + Delta-G solvation = -2582.586625 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 226.142 amu
Computer time = 0.25 seconds
Orbital eigenvalues (eV)
-39.47507 -37.65793 -33.93111 -32.71401 -31.88767 -31.09613 -28.74906 -26.61814
-24.35122 -22.26324 -21.45216 -18.98909 -18.62034 -17.70244 -16.39187 -15.52228
-14.92308 -14.65801 -14.33710 -14.07316 -13.85069 -13.76443 -13.19413 -12.54635
-12.15818 -11.95875 -11.73291 -11.46359 -11.35256 -11.23906 -10.99747 -10.55544
-10.34797 -10.19900 -10.12554 -10.01100 -9.74492 -9.38484 -8.51349 -8.16977
-7.86909 -6.34221 -3.74660 3.22120 3.30009 3.36041 4.04346 4.23548
4.67697 4.80207 4.89042 4.95531 5.18166 5.32412 5.43827 5.56078
5.59927 5.65992 5.72918 5.76743 5.87278 6.06631 6.16565 6.20151
6.23443 6.35192 6.49372 6.60682 6.65333 6.88638 7.01441 7.30884
7.57183 7.61831 8.14828 8.70729 9.25887 9.65609 10.17581 10.83673
Molecular weight = 226.14amu
Principal moments of inertia in cm(-1)
A = 0.055335 B = 0.005870 C = 0.005512
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 505.886579 B = 4768.852282 C = 5078.830943
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.902 5.902
2 C 0.021 3.979
3 Si 0.928 3.072
4 H -0.279 1.279
5 H -0.284 1.284
6 H -0.270 1.270
7 C -0.299 4.299
8 H 0.102 0.898
9 N -0.566 5.566
10 C 0.440 3.560
11 O -0.597 6.597
12 C -0.117 4.117
13 C -0.055 4.055
14 H 0.075 0.925
15 C -0.121 4.121
16 C -0.119 4.119
17 C -0.120 4.120
18 C -0.153 4.153
19 C 0.093 3.907
20 H 0.077 0.923
21 N -0.840 5.840
22 H 0.270 0.730
23 H 0.393 0.607
24 H 0.071 0.929
25 H 0.085 0.915
26 H 0.052 0.948
27 H 0.092 0.908
28 H 0.056 0.944
29 H 0.061 0.939
30 H 0.055 0.945
31 H 0.056 0.944
32 H 0.055 0.945
33 H 0.066 0.934
34 H 0.333 0.667
35 H 0.340 0.660
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.176 -14.692 1.541 14.819
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.544 5.544
2 C -0.180 4.180
3 Si 0.756 3.244
4 H -0.205 1.205
5 H -0.210 1.210
6 H -0.195 1.195
7 C -0.429 4.429
8 H 0.119 0.881
9 N -0.201 5.201
10 C 0.227 3.773
11 O -0.483 6.483
12 C -0.158 4.158
13 C -0.074 4.074
14 H 0.093 0.907
15 C -0.158 4.158
16 C -0.156 4.156
17 C -0.157 4.157
18 C -0.192 4.192
19 C -0.019 4.019
20 H 0.095 0.905
21 N -0.370 5.370
22 H 0.080 0.920
23 H 0.226 0.774
24 H 0.090 0.910
25 H 0.103 0.897
26 H 0.071 0.929
27 H 0.111 0.889
28 H 0.075 0.925
29 H 0.080 0.920
30 H 0.074 0.926
31 H 0.074 0.926
32 H 0.074 0.926
33 H 0.085 0.915
34 H 0.144 0.856
35 H 0.155 0.845
Dipole moment (debyes) X Y Z Total
from point charges 1.492 -13.842 1.271 13.980
hybrid contribution 0.303 -0.023 0.175 0.351
sum 1.795 -13.864 1.446 14.054
Atomic orbital electron populations
1.69619 1.05911 1.28001 1.50858 1.25250 0.95600 0.99648 0.97527
0.85887 0.79219 0.81020 0.78312 1.20490 1.20980 1.19500 1.19710
0.93323 0.82502 1.47380 0.88059 1.41945 1.09243 1.04739 1.64193
1.20159 0.88334 0.85258 0.83533 1.90451 1.14128 1.87459 1.56278
1.21411 0.98329 0.92855 1.03164 1.20789 0.95800 0.91734 0.99059
0.90654 1.21714 0.97681 0.99798 0.96640 1.21548 0.98272 0.94346
1.01447 1.21546 0.98823 0.98027 0.97349 1.22330 0.99451 0.98925
0.98516 1.21517 0.91745 0.94167 0.94437 0.90508 1.58966 1.30761
1.41918 1.05398 0.91968 0.77414 0.91026 0.89680 0.92888 0.88919
0.92534 0.92036 0.92613 0.92573 0.92628 0.91542 0.85560 0.84478
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -25.21 13.05 55.50 0.72 -24.48 16
2 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16
3 Si 0.93 21.46 29.55 -169.99 -5.02 16.44 16
4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16
5 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16
6 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16
7 C -0.30 -8.55 9.68 -14.94 -0.14 -8.69 16
8 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16
9 N -0.57 -14.81 5.29 -10.97 -0.06 -14.87 16
10 C 0.44 10.58 7.50 -10.98 -0.08 10.50 16
11 O -0.60 -15.98 13.54 5.55 0.08 -15.91 16
12 C -0.12 -2.16 4.94 -27.89 -0.14 -2.30 16
13 C -0.05 -0.88 1.66 -90.62 -0.15 -1.03 16
14 H 0.08 1.34 7.96 -51.93 -0.41 0.92 16
15 C -0.12 -1.93 4.68 -26.73 -0.13 -2.05 16
16 C -0.12 -1.56 5.92 -26.73 -0.16 -1.71 16
17 C -0.12 -1.29 5.66 -26.73 -0.15 -1.45 16
18 C -0.15 -1.66 5.61 -26.73 -0.15 -1.81 16
19 C 0.09 1.17 3.14 -67.71 -0.21 0.96 16
20 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16
21 N -0.84 -9.74 8.45 -4.67 -0.04 -9.78 16
22 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16
23 H 0.39 9.97 7.90 -40.82 -0.32 9.65 16
24 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16
25 H 0.08 1.53 7.76 -51.93 -0.40 1.12 16
26 H 0.05 0.80 6.57 -51.93 -0.34 0.46 16
27 H 0.09 1.85 5.95 -51.93 -0.31 1.54 16
28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16
29 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16
30 H 0.06 0.56 6.76 -51.93 -0.35 0.21 16
31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16
32 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16
33 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16
34 H 0.33 3.16 9.04 -39.29 -0.36 2.80 16
35 H 0.34 3.91 5.44 -39.29 -0.21 3.70 16
LS Contribution 275.34 15.07 4.15 4.15
Total: -1.00 -30.14 275.34 -6.76 -36.90
By element:
Atomic # 1 Polarization: 19.82 SS G_CDS: -5.18 Total: 14.64 kcal
Atomic # 6 Polarization: -5.69 SS G_CDS: -1.41 Total: -7.10 kcal
Atomic # 7 Polarization: -49.75 SS G_CDS: 0.63 Total: -49.13 kcal
Atomic # 8 Polarization: -15.98 SS G_CDS: 0.08 Total: -15.91 kcal
Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal
Total LS contribution 4.15 Total: 4.15 kcal
Total: -30.14 -6.76 -36.90 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000307595144.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -30.041 kcal
(2) G-P(sol) polarization free energy of solvation -30.145 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.186 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.759 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.904 kcal
(6) G-S(sol) free energy of system = (1) + (5) -66.946 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.25 seconds