Wall clock time and date at job start Mon Mar 30 2020 02:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86805 * 120.00045 * 2 1 4 4 H 1.48493 * 109.47348 * 270.00439 * 3 2 1 5 5 H 1.48497 * 109.46731 * 30.00751 * 3 2 1 6 6 H 1.48506 * 109.46921 * 150.00120 * 3 2 1 7 7 C 1.38952 * 120.00135 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99779 * 179.97438 * 7 2 1 9 9 N 1.37091 * 119.99659 * 359.97438 * 7 2 1 10 10 C 1.34784 * 119.99876 * 180.02562 * 9 7 2 11 11 O 1.21284 * 119.99758 * 0.02562 * 10 9 7 12 12 C 1.50697 * 119.99940 * 180.02562 * 10 9 7 13 13 C 1.52998 * 109.47059 * 180.02562 * 12 10 9 14 14 H 1.09006 * 109.47488 * 305.00292 * 13 12 10 15 15 C 1.52998 * 109.47034 * 64.99917 * 13 12 10 16 16 C 1.53006 * 109.46946 * 180.02562 * 15 13 12 17 17 C 1.52998 * 109.47064 * 299.99602 * 16 15 13 18 18 C 1.53008 * 109.46791 * 60.00410 * 17 16 15 19 19 C 1.52998 * 109.47070 * 299.99820 * 18 17 16 20 20 H 1.08995 * 109.47028 * 179.97438 * 19 18 17 21 21 N 1.46905 * 109.47084 * 299.99945 * 19 18 17 22 22 H 0.97002 * 120.00089 * 359.97438 * 1 2 3 23 23 H 0.96999 * 120.00386 * 0.02562 * 9 7 2 24 24 H 1.08997 * 109.47101 * 60.00233 * 12 10 9 25 25 H 1.08993 * 109.47105 * 300.00005 * 12 10 9 26 26 H 1.09004 * 109.47281 * 60.00319 * 15 13 12 27 27 H 1.09001 * 109.47245 * 299.99776 * 15 13 12 28 28 H 1.09004 * 109.46991 * 180.02562 * 16 15 13 29 29 H 1.08999 * 109.47342 * 60.00299 * 16 15 13 30 30 H 1.08999 * 109.47610 * 300.00533 * 17 16 15 31 31 H 1.09002 * 109.47111 * 180.02562 * 17 16 15 32 32 H 1.09001 * 109.47080 * 179.97438 * 18 17 16 33 33 H 1.08999 * 109.46943 * 59.99715 * 18 17 16 34 34 H 1.00901 * 110.99869 * 300.00384 * 21 19 18 35 35 H 1.00896 * 110.99543 * 63.95506 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0465 -1.4000 5 1 1.4456 2.6526 0.7002 6 1 3.5457 1.4401 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2101 -3.5578 -0.0001 12 6 1.2438 -4.8629 -0.0011 13 6 2.2380 -6.0258 -0.0004 14 1 2.9228 -5.9190 -0.8416 15 6 3.0317 -6.0173 1.3076 16 6 4.0264 -7.1799 1.3081 17 6 3.2662 -8.5016 1.1816 18 6 2.4724 -8.5101 -0.1265 19 6 1.4777 -7.3475 -0.1270 20 1 0.9126 -7.3533 -1.0590 21 7 0.5549 -7.4921 1.0068 22 1 -0.4850 0.8401 0.0004 23 1 0.3534 -2.3906 -0.0005 24 1 0.6175 -4.9204 -0.8914 25 1 0.6168 -4.9208 0.8885 26 1 2.3469 -6.1242 2.1489 27 1 3.5737 -5.0759 1.3976 28 1 4.5916 -7.1741 2.2401 29 1 4.7112 -7.0726 0.4668 30 1 2.5814 -8.6089 2.0228 31 1 3.9747 -9.3298 1.1824 32 1 1.9311 -9.4519 -0.2169 33 1 3.1571 -8.4028 -0.9677 34 1 0.0405 -8.3581 0.9462 35 1 1.0475 -7.4249 1.8848 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307595144.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:42 Heat of formation + Delta-G solvation = -66.945766 kcal Electronic energy + Delta-G solvation = -16087.341463 eV Core-core repulsion = 13504.754837 eV Total energy + Delta-G solvation = -2582.586625 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.47507 -37.65793 -33.93111 -32.71401 -31.88767 -31.09613 -28.74906 -26.61814 -24.35122 -22.26324 -21.45216 -18.98909 -18.62034 -17.70244 -16.39187 -15.52228 -14.92308 -14.65801 -14.33710 -14.07316 -13.85069 -13.76443 -13.19413 -12.54635 -12.15818 -11.95875 -11.73291 -11.46359 -11.35256 -11.23906 -10.99747 -10.55544 -10.34797 -10.19900 -10.12554 -10.01100 -9.74492 -9.38484 -8.51349 -8.16977 -7.86909 -6.34221 -3.74660 3.22120 3.30009 3.36041 4.04346 4.23548 4.67697 4.80207 4.89042 4.95531 5.18166 5.32412 5.43827 5.56078 5.59927 5.65992 5.72918 5.76743 5.87278 6.06631 6.16565 6.20151 6.23443 6.35192 6.49372 6.60682 6.65333 6.88638 7.01441 7.30884 7.57183 7.61831 8.14828 8.70729 9.25887 9.65609 10.17581 10.83673 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.055335 B = 0.005870 C = 0.005512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.886579 B = 4768.852282 C = 5078.830943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.021 3.979 3 Si 0.928 3.072 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.299 4.299 8 H 0.102 0.898 9 N -0.566 5.566 10 C 0.440 3.560 11 O -0.597 6.597 12 C -0.117 4.117 13 C -0.055 4.055 14 H 0.075 0.925 15 C -0.121 4.121 16 C -0.119 4.119 17 C -0.120 4.120 18 C -0.153 4.153 19 C 0.093 3.907 20 H 0.077 0.923 21 N -0.840 5.840 22 H 0.270 0.730 23 H 0.393 0.607 24 H 0.071 0.929 25 H 0.085 0.915 26 H 0.052 0.948 27 H 0.092 0.908 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.066 0.934 34 H 0.333 0.667 35 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.176 -14.692 1.541 14.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.180 4.180 3 Si 0.756 3.244 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.195 1.195 7 C -0.429 4.429 8 H 0.119 0.881 9 N -0.201 5.201 10 C 0.227 3.773 11 O -0.483 6.483 12 C -0.158 4.158 13 C -0.074 4.074 14 H 0.093 0.907 15 C -0.158 4.158 16 C -0.156 4.156 17 C -0.157 4.157 18 C -0.192 4.192 19 C -0.019 4.019 20 H 0.095 0.905 21 N -0.370 5.370 22 H 0.080 0.920 23 H 0.226 0.774 24 H 0.090 0.910 25 H 0.103 0.897 26 H 0.071 0.929 27 H 0.111 0.889 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.144 0.856 35 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 1.492 -13.842 1.271 13.980 hybrid contribution 0.303 -0.023 0.175 0.351 sum 1.795 -13.864 1.446 14.054 Atomic orbital electron populations 1.69619 1.05911 1.28001 1.50858 1.25250 0.95600 0.99648 0.97527 0.85887 0.79219 0.81020 0.78312 1.20490 1.20980 1.19500 1.19710 0.93323 0.82502 1.47380 0.88059 1.41945 1.09243 1.04739 1.64193 1.20159 0.88334 0.85258 0.83533 1.90451 1.14128 1.87459 1.56278 1.21411 0.98329 0.92855 1.03164 1.20789 0.95800 0.91734 0.99059 0.90654 1.21714 0.97681 0.99798 0.96640 1.21548 0.98272 0.94346 1.01447 1.21546 0.98823 0.98027 0.97349 1.22330 0.99451 0.98925 0.98516 1.21517 0.91745 0.94167 0.94437 0.90508 1.58966 1.30761 1.41918 1.05398 0.91968 0.77414 0.91026 0.89680 0.92888 0.88919 0.92534 0.92036 0.92613 0.92573 0.92628 0.91542 0.85560 0.84478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.21 13.05 55.50 0.72 -24.48 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 3 Si 0.93 21.46 29.55 -169.99 -5.02 16.44 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 6 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.30 -8.55 9.68 -14.94 -0.14 -8.69 16 8 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 9 N -0.57 -14.81 5.29 -10.97 -0.06 -14.87 16 10 C 0.44 10.58 7.50 -10.98 -0.08 10.50 16 11 O -0.60 -15.98 13.54 5.55 0.08 -15.91 16 12 C -0.12 -2.16 4.94 -27.89 -0.14 -2.30 16 13 C -0.05 -0.88 1.66 -90.62 -0.15 -1.03 16 14 H 0.08 1.34 7.96 -51.93 -0.41 0.92 16 15 C -0.12 -1.93 4.68 -26.73 -0.13 -2.05 16 16 C -0.12 -1.56 5.92 -26.73 -0.16 -1.71 16 17 C -0.12 -1.29 5.66 -26.73 -0.15 -1.45 16 18 C -0.15 -1.66 5.61 -26.73 -0.15 -1.81 16 19 C 0.09 1.17 3.14 -67.71 -0.21 0.96 16 20 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 21 N -0.84 -9.74 8.45 -4.67 -0.04 -9.78 16 22 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 23 H 0.39 9.97 7.90 -40.82 -0.32 9.65 16 24 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 25 H 0.08 1.53 7.76 -51.93 -0.40 1.12 16 26 H 0.05 0.80 6.57 -51.93 -0.34 0.46 16 27 H 0.09 1.85 5.95 -51.93 -0.31 1.54 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.06 0.56 6.76 -51.93 -0.35 0.21 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.33 3.16 9.04 -39.29 -0.36 2.80 16 35 H 0.34 3.91 5.44 -39.29 -0.21 3.70 16 LS Contribution 275.34 15.07 4.15 4.15 Total: -1.00 -30.14 275.34 -6.76 -36.90 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: -5.18 Total: 14.64 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: -1.41 Total: -7.10 kcal Atomic # 7 Polarization: -49.75 SS G_CDS: 0.63 Total: -49.13 kcal Atomic # 8 Polarization: -15.98 SS G_CDS: 0.08 Total: -15.91 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -30.14 -6.76 -36.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307595144.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.041 kcal (2) G-P(sol) polarization free energy of solvation -30.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds