Wall clock time and date at job start Mon Mar 30 2020 02:41:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 120.00214 * 2 1 4 4 H 1.48502 * 109.47335 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47175 * 299.99663 * 3 2 1 6 6 H 1.48494 * 109.47170 * 59.99992 * 3 2 1 7 7 C 1.38816 * 119.99950 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00230 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99973 * 0.02562 * 7 2 1 10 10 C 1.46506 * 120.00488 * 180.02562 * 9 7 2 11 11 H 1.09005 * 108.86573 * 36.38787 * 10 9 7 12 12 C 1.54245 * 108.89087 * 277.88499 * 10 9 7 13 13 C 1.50471 * 108.51963 * 159.25431 * 12 10 9 14 14 C 1.54072 * 112.49702 * 94.15116 * 13 12 10 15 15 C 1.54268 * 112.94522 * 318.16698 * 14 13 12 16 16 C 1.50474 * 112.38918 * 318.57842 * 15 14 13 17 17 C 1.45532 * 108.89937 * 154.99551 * 10 9 7 18 18 H 1.09005 * 108.89581 * 61.93488 * 17 10 9 19 19 C 1.50704 * 108.81848 * 303.39503 * 17 10 9 20 20 N 1.34776 * 119.99637 * 177.16228 * 19 17 10 21 21 O 1.21272 * 120.00099 * 357.15522 * 19 17 10 22 22 H 0.96997 * 119.99802 * 0.02562 * 1 2 3 23 23 H 0.97001 * 120.00206 * 359.97438 * 9 7 2 24 24 H 1.08992 * 109.62605 * 278.96685 * 12 10 9 25 25 H 1.09000 * 109.63118 * 39.54654 * 12 10 9 26 26 H 1.08996 * 108.87764 * 214.92195 * 13 12 10 27 27 H 1.08998 * 108.88359 * 333.37124 * 13 12 10 28 28 H 1.09001 * 108.81672 * 79.13908 * 14 13 12 29 29 H 1.09002 * 108.81404 * 197.53339 * 14 13 12 30 30 H 1.08996 * 109.18360 * 197.65706 * 15 14 13 31 31 H 1.08995 * 108.68331 * 79.15464 * 15 14 13 32 32 H 1.09002 * 109.62953 * 334.12706 * 16 15 14 33 33 H 1.09005 * 109.62746 * 213.74130 * 16 15 14 34 34 H 0.96992 * 120.00384 * 359.97438 * 20 19 17 35 35 H 0.97008 * 119.99184 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8916 2.3964 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0580 -3.6569 0.0017 11 1 2.9529 -3.5468 0.6142 12 6 2.4822 -3.9900 -1.4434 13 6 3.6266 -4.9656 -1.3928 14 6 3.1581 -6.4297 -1.4970 15 6 1.8928 -6.7171 -0.6625 16 6 1.9313 -6.0495 0.6854 17 6 1.2125 -4.6887 0.5835 18 1 0.3220 -4.8052 -0.0343 19 6 0.7942 -4.2530 1.9642 20 7 -0.0448 -5.0206 2.6876 21 8 1.2126 -3.2119 2.4243 22 1 -0.4850 0.8400 -0.0004 23 1 0.3556 -2.3881 0.0005 24 1 1.6435 -4.4366 -1.9774 25 1 2.7998 -3.0791 -1.9510 26 1 4.3073 -4.7538 -2.2172 27 1 4.1620 -4.8328 -0.4527 28 1 2.9499 -6.6587 -2.5421 29 1 3.9595 -7.0809 -1.1479 30 1 1.7943 -7.7933 -0.5204 31 1 1.0232 -6.3548 -1.2108 32 1 2.9670 -5.8948 0.9880 33 1 1.4254 -6.6769 1.4193 34 1 -0.3797 -5.8531 2.3195 35 1 -0.3138 -4.7403 3.5765 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307627336.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:13 Heat of formation + Delta-G solvation = -36.339592 kcal Electronic energy + Delta-G solvation = -16665.417069 eV Core-core repulsion = 14084.157627 eV Total energy + Delta-G solvation = -2581.259442 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.90145 -37.31684 -34.32357 -33.14185 -31.77416 -31.44499 -28.68431 -25.12524 -24.38459 -22.36945 -21.11382 -19.38045 -18.96420 -17.31816 -16.70110 -16.03581 -15.30812 -14.64411 -14.38581 -13.89146 -13.44460 -13.27130 -13.10427 -12.62847 -12.43295 -11.94700 -11.73765 -11.23152 -10.88343 -10.73378 -10.54434 -10.36349 -10.24706 -10.04596 -10.00684 -9.74302 -9.44199 -9.10839 -9.03174 -8.63700 -6.69159 -5.54659 -2.79362 3.36737 3.56170 3.61439 3.63646 4.02679 4.73082 4.91465 4.98746 5.08775 5.41412 5.43990 5.50923 5.58128 5.68588 5.81621 5.90970 5.92663 6.02221 6.22004 6.24787 6.35612 6.41667 6.45248 6.61732 6.73460 6.81601 7.06310 7.20587 7.30161 7.85931 7.90396 8.63050 8.96655 9.74275 10.31433 10.65951 11.69257 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.027954 B = 0.009557 C = 0.007680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.401144 B = 2929.069158 C = 3645.195294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.020 4.020 3 Si 0.902 3.098 4 H -0.282 1.282 5 H -0.295 1.295 6 H -0.295 1.295 7 C -0.211 4.211 8 H 0.067 0.933 9 N -0.712 5.712 10 C 0.188 3.812 11 H 0.048 0.952 12 C -0.134 4.134 13 C -0.117 4.117 14 C -0.114 4.114 15 C -0.116 4.116 16 C -0.105 4.105 17 C -0.102 4.102 18 H 0.088 0.912 19 C 0.508 3.492 20 N -0.871 5.871 21 O -0.492 6.492 22 H 0.250 0.750 23 H 0.378 0.622 24 H 0.052 0.948 25 H 0.071 0.929 26 H 0.050 0.950 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.392 0.608 35 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.104 -16.615 -0.070 16.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.214 4.214 3 Si 0.734 3.266 4 H -0.207 1.207 5 H -0.223 1.223 6 H -0.222 1.222 7 C -0.343 4.343 8 H 0.085 0.915 9 N -0.351 5.351 10 C 0.078 3.922 11 H 0.066 0.934 12 C -0.174 4.174 13 C -0.156 4.156 14 C -0.152 4.152 15 C -0.154 4.154 16 C -0.143 4.143 17 C -0.124 4.124 18 H 0.106 0.894 19 C 0.291 3.709 20 N -0.437 5.437 21 O -0.362 6.362 22 H 0.060 0.940 23 H 0.212 0.788 24 H 0.071 0.929 25 H 0.089 0.911 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.219 0.781 35 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 2.643 -15.706 0.074 15.927 hybrid contribution -0.276 0.649 0.196 0.732 sum 2.367 -15.057 0.270 15.244 Atomic orbital electron populations 1.69666 1.05006 1.24890 1.59196 1.24647 0.95437 0.97329 1.04007 0.86169 0.78773 0.84751 0.76893 1.20744 1.22280 1.22210 1.19183 0.90756 0.84088 1.40238 0.91487 1.42325 1.05228 0.99572 1.87948 1.18934 0.94608 0.85803 0.92900 0.93433 1.22041 0.96919 0.98365 1.00096 1.21341 0.98850 0.93964 1.01401 1.21939 0.96975 0.96929 0.99319 1.21348 0.98875 0.99415 0.95748 1.21300 1.01400 0.94218 0.97415 1.20603 1.00990 0.96790 0.94010 0.89355 1.20737 0.78644 0.83796 0.87721 1.43985 1.52335 1.26544 1.20812 1.90886 1.52974 1.21708 1.70645 0.94049 0.78832 0.92941 0.91052 0.93078 0.92427 0.92675 0.92960 0.92515 0.91807 0.91028 0.91926 0.78092 0.77727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.97 13.06 55.49 0.72 -29.24 16 2 C -0.02 -0.60 5.50 -17.43 -0.10 -0.69 16 3 Si 0.90 23.92 29.55 -169.99 -5.02 18.90 16 4 H -0.28 -7.24 7.11 56.52 0.40 -6.84 16 5 H -0.30 -7.78 7.11 56.52 0.40 -7.37 16 6 H -0.29 -7.92 7.11 56.52 0.40 -7.52 16 7 C -0.21 -6.21 9.71 -15.06 -0.15 -6.36 16 8 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 9 N -0.71 -18.67 3.51 -56.24 -0.20 -18.87 16 10 C 0.19 3.84 1.32 -70.80 -0.09 3.75 16 11 H 0.05 1.07 7.28 -51.93 -0.38 0.70 16 12 C -0.13 -2.38 5.19 -27.34 -0.14 -2.52 16 13 C -0.12 -1.68 5.31 -27.43 -0.15 -1.83 16 14 C -0.11 -1.31 5.85 -25.51 -0.15 -1.46 16 15 C -0.12 -1.27 5.34 -27.33 -0.15 -1.42 16 16 C -0.10 -1.29 4.94 -27.34 -0.13 -1.42 16 17 C -0.10 -1.67 1.58 -94.64 -0.15 -1.82 16 18 H 0.09 1.40 7.48 -51.93 -0.39 1.01 16 19 C 0.51 9.39 7.00 -10.98 -0.08 9.32 16 20 N -0.87 -11.38 8.58 31.22 0.27 -11.11 16 21 O -0.49 -12.17 15.73 5.56 0.09 -12.08 16 22 H 0.25 7.74 8.31 -40.82 -0.34 7.40 16 23 H 0.38 10.66 7.62 -40.82 -0.31 10.35 16 24 H 0.05 0.89 6.99 -51.93 -0.36 0.52 16 25 H 0.07 1.46 7.92 -51.93 -0.41 1.05 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.85 6.63 -51.93 -0.34 0.51 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.73 6.65 -51.93 -0.35 0.38 16 32 H 0.07 0.94 6.98 -51.93 -0.36 0.58 16 33 H 0.06 0.63 7.12 -51.93 -0.37 0.26 16 34 H 0.39 3.67 8.19 -40.82 -0.33 3.33 16 35 H 0.39 4.83 8.93 -40.82 -0.36 4.47 16 LS Contribution 274.00 15.07 4.13 4.13 Total: -1.00 -35.23 274.00 -6.50 -41.73 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: -5.21 Total: 11.00 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: -1.28 Total: -4.46 kcal Atomic # 7 Polarization: -60.01 SS G_CDS: 0.79 Total: -59.21 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: 0.09 Total: -12.08 kcal Atomic # 14 Polarization: 23.92 SS G_CDS: -5.02 Total: 18.90 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -35.23 -6.50 -41.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307627336.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.388 kcal (2) G-P(sol) polarization free energy of solvation -35.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds