Wall clock time and date at job start Mon Mar 30 2020 02:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 120.00214 * 2 1 4 4 H 1.48502 * 109.47335 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47175 * 299.99663 * 3 2 1 6 6 H 1.48494 * 109.47170 * 59.99992 * 3 2 1 7 7 C 1.38816 * 119.99950 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00230 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99973 * 0.02562 * 7 2 1 10 10 C 1.46506 * 120.00488 * 180.02562 * 9 7 2 11 11 H 1.09005 * 108.86573 * 36.38787 * 10 9 7 12 12 C 1.54245 * 108.89087 * 277.88499 * 10 9 7 13 13 C 1.50471 * 108.51963 * 159.25431 * 12 10 9 14 14 C 1.54072 * 112.49702 * 94.15116 * 13 12 10 15 15 C 1.54268 * 112.94522 * 318.16698 * 14 13 12 16 16 C 1.50474 * 112.38918 * 318.57842 * 15 14 13 17 17 C 1.45532 * 108.89937 * 154.99551 * 10 9 7 18 18 H 1.09005 * 108.89581 * 61.93488 * 17 10 9 19 19 C 1.50704 * 108.81848 * 303.39503 * 17 10 9 20 20 N 1.34776 * 119.99637 * 177.16228 * 19 17 10 21 21 O 1.21272 * 120.00099 * 357.15522 * 19 17 10 22 22 H 0.96997 * 119.99802 * 0.02562 * 1 2 3 23 23 H 0.97001 * 120.00206 * 359.97438 * 9 7 2 24 24 H 1.08992 * 109.62605 * 278.96685 * 12 10 9 25 25 H 1.09000 * 109.63118 * 39.54654 * 12 10 9 26 26 H 1.08996 * 108.87764 * 214.92195 * 13 12 10 27 27 H 1.08998 * 108.88359 * 333.37124 * 13 12 10 28 28 H 1.09001 * 108.81672 * 79.13908 * 14 13 12 29 29 H 1.09002 * 108.81404 * 197.53339 * 14 13 12 30 30 H 1.08996 * 109.18360 * 197.65706 * 15 14 13 31 31 H 1.08995 * 108.68331 * 79.15464 * 15 14 13 32 32 H 1.09002 * 109.62953 * 334.12706 * 16 15 14 33 33 H 1.09005 * 109.62746 * 213.74130 * 16 15 14 34 34 H 0.96992 * 120.00384 * 359.97438 * 20 19 17 35 35 H 0.97008 * 119.99184 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8916 2.3964 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0580 -3.6569 0.0017 11 1 2.9529 -3.5468 0.6142 12 6 2.4822 -3.9900 -1.4434 13 6 3.6266 -4.9656 -1.3928 14 6 3.1581 -6.4297 -1.4970 15 6 1.8928 -6.7171 -0.6625 16 6 1.9313 -6.0495 0.6854 17 6 1.2125 -4.6887 0.5835 18 1 0.3220 -4.8052 -0.0343 19 6 0.7942 -4.2530 1.9642 20 7 -0.0448 -5.0206 2.6876 21 8 1.2126 -3.2119 2.4243 22 1 -0.4850 0.8400 -0.0004 23 1 0.3556 -2.3881 0.0005 24 1 1.6435 -4.4366 -1.9774 25 1 2.7998 -3.0791 -1.9510 26 1 4.3073 -4.7538 -2.2172 27 1 4.1620 -4.8328 -0.4527 28 1 2.9499 -6.6587 -2.5421 29 1 3.9595 -7.0809 -1.1479 30 1 1.7943 -7.7933 -0.5204 31 1 1.0232 -6.3548 -1.2108 32 1 2.9670 -5.8948 0.9880 33 1 1.4254 -6.6769 1.4193 34 1 -0.3797 -5.8531 2.3195 35 1 -0.3138 -4.7403 3.5765 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307627336.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:12 Heat of formation + Delta-G solvation = -63.772304 kcal Electronic energy + Delta-G solvation = -16666.606641 eV Core-core repulsion = 14084.157627 eV Total energy + Delta-G solvation = -2582.449014 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.33051 -38.70546 -36.08474 -34.56613 -33.53240 -32.76291 -30.49424 -26.41701 -26.11677 -23.99319 -22.54392 -20.85085 -20.06224 -19.14555 -18.30476 -17.43326 -16.95058 -15.98985 -15.95681 -15.38917 -15.12256 -14.84287 -14.64875 -14.01758 -13.83448 -13.21152 -13.09965 -12.93468 -12.84662 -12.40343 -12.12780 -12.03893 -11.80212 -11.50404 -11.31175 -11.21398 -11.05762 -10.86272 -10.47900 -10.42292 -8.84566 -7.86627 -5.09508 1.42233 1.45092 1.53874 1.92678 2.59547 2.76482 3.46636 3.69032 3.87459 4.02580 4.19933 4.30946 4.34715 4.43872 4.51518 4.51713 4.78262 4.90639 5.04808 5.11975 5.15440 5.18213 5.37687 5.42662 5.47176 5.53233 5.59224 5.63312 5.71619 6.09336 6.35984 6.68759 7.41176 7.64260 8.19353 8.41034 9.38227 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.027954 B = 0.009557 C = 0.007680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.401144 B = 2929.069158 C = 3645.195294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.086 4.086 3 Si 0.965 3.035 4 H -0.270 1.270 5 H -0.290 1.290 6 H -0.300 1.300 7 C -0.208 4.208 8 H 0.063 0.937 9 N -0.721 5.721 10 C 0.188 3.812 11 H 0.020 0.980 12 C -0.121 4.121 13 C -0.115 4.115 14 C -0.111 4.111 15 C -0.115 4.115 16 C -0.095 4.095 17 C -0.099 4.099 18 H 0.100 0.900 19 C 0.503 3.497 20 N -0.843 5.843 21 O -0.567 6.567 22 H 0.245 0.755 23 H 0.366 0.634 24 H 0.065 0.935 25 H 0.035 0.965 26 H 0.058 0.942 27 H 0.048 0.952 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.090 0.910 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.093 0.907 34 H 0.415 0.585 35 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.450 -19.357 -0.485 19.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.626 5.626 2 C -0.277 4.277 3 Si 0.795 3.205 4 H -0.194 1.194 5 H -0.218 1.218 6 H -0.228 1.228 7 C -0.341 4.341 8 H 0.081 0.919 9 N -0.360 5.360 10 C 0.080 3.920 11 H 0.038 0.962 12 C -0.161 4.161 13 C -0.153 4.153 14 C -0.148 4.148 15 C -0.153 4.153 16 C -0.133 4.133 17 C -0.121 4.121 18 H 0.118 0.882 19 C 0.288 3.712 20 N -0.408 5.408 21 O -0.444 6.444 22 H 0.054 0.946 23 H 0.197 0.803 24 H 0.083 0.917 25 H 0.054 0.946 26 H 0.077 0.923 27 H 0.067 0.933 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.109 0.891 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.112 0.888 34 H 0.246 0.754 35 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 2.997 -18.557 -0.351 18.801 hybrid contribution -0.373 1.392 0.362 1.486 sum 2.624 -17.165 0.012 17.365 Atomic orbital electron populations 1.69817 1.06352 1.25161 1.61283 1.25416 0.96393 1.00620 1.05260 0.85171 0.78174 0.80656 0.76489 1.19439 1.21758 1.22784 1.19474 0.90770 0.85647 1.38175 0.91905 1.42488 1.04707 1.00831 1.87927 1.19159 0.93743 0.84901 0.94207 0.96237 1.21816 0.98791 0.98026 0.97512 1.21285 0.97312 0.95432 1.01261 1.21927 0.98010 0.94409 1.00486 1.21370 0.98319 1.01275 0.94314 1.21313 1.00639 0.91783 0.99563 1.20585 1.01082 0.97855 0.92585 0.88210 1.21147 0.78473 0.83086 0.88497 1.43681 1.50134 1.26477 1.20553 1.90859 1.56097 1.25033 1.72391 0.94625 0.80317 0.91652 0.94576 0.92347 0.93338 0.91444 0.91045 0.89134 0.91996 0.91842 0.88815 0.75398 0.76936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -64.14 13.06 21.65 0.28 -63.85 16 2 C -0.09 -5.39 5.50 84.86 0.47 -4.92 16 3 Si 0.96 50.53 29.55 68.60 2.03 52.56 16 4 H -0.27 -13.38 7.11 99.48 0.71 -12.67 16 5 H -0.29 -14.85 7.11 99.48 0.71 -14.14 16 6 H -0.30 -15.86 7.11 99.48 0.71 -15.16 16 7 C -0.21 -12.66 9.71 84.04 0.82 -11.84 16 8 H 0.06 3.78 7.83 -2.91 -0.02 3.76 16 9 N -0.72 -39.13 3.51 -331.85 -1.17 -40.30 16 10 C 0.19 7.81 1.32 43.13 0.06 7.87 16 11 H 0.02 0.92 7.28 -2.38 -0.02 0.90 16 12 C -0.12 -4.30 5.19 30.20 0.16 -4.14 16 13 C -0.11 -3.10 5.31 30.14 0.16 -2.94 16 14 C -0.11 -2.12 5.85 31.39 0.18 -1.93 16 15 C -0.12 -2.00 5.34 30.21 0.16 -1.83 16 16 C -0.09 -2.01 4.94 30.20 0.15 -1.86 16 17 C -0.10 -3.14 1.58 -13.40 -0.02 -3.17 16 18 H 0.10 2.97 7.48 -2.38 -0.02 2.95 16 19 C 0.50 18.43 7.00 87.66 0.61 19.05 16 20 N -0.84 -20.32 8.58 -173.54 -1.49 -21.81 16 21 O -0.57 -28.98 15.73 -3.01 -0.05 -29.03 16 22 H 0.24 15.64 8.31 -92.71 -0.77 14.87 16 23 H 0.37 21.34 7.62 -92.71 -0.71 20.63 16 24 H 0.06 2.12 6.99 -2.39 -0.02 2.11 16 25 H 0.04 1.51 7.92 -2.39 -0.02 1.49 16 26 H 0.06 1.49 8.14 -2.39 -0.02 1.48 16 27 H 0.05 1.40 6.63 -2.39 -0.02 1.38 16 28 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.07 1.14 8.14 -2.39 -0.02 1.13 16 30 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.06 1.14 6.65 -2.39 -0.02 1.12 16 32 H 0.06 1.50 6.98 -2.39 -0.02 1.48 16 33 H 0.09 1.43 7.12 -2.38 -0.02 1.42 16 34 H 0.41 6.29 8.19 -92.71 -0.76 5.53 16 35 H 0.40 9.18 8.93 -92.70 -0.83 8.36 16 Total: -1.00 -80.52 274.00 1.17 -79.35 By element: Atomic # 1 Polarization: 29.99 SS G_CDS: -1.18 Total: 28.81 kcal Atomic # 6 Polarization: -8.47 SS G_CDS: 2.74 Total: -5.73 kcal Atomic # 7 Polarization: -123.59 SS G_CDS: -2.37 Total: -125.96 kcal Atomic # 8 Polarization: -28.98 SS G_CDS: -0.05 Total: -29.03 kcal Atomic # 14 Polarization: 50.53 SS G_CDS: 2.03 Total: 52.56 kcal Total: -80.52 1.17 -79.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307627336.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.577 kcal (2) G-P(sol) polarization free energy of solvation -80.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds