Wall clock time and date at job start Mon Mar 30 2020 03:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47230 * 2 1 4 4 C 1.50706 * 109.47383 * 240.00069 * 2 1 3 5 5 H 1.07999 * 120.00377 * 237.00873 * 4 2 1 6 6 C 1.37880 * 120.00003 * 56.99993 * 4 2 1 7 7 N 1.31522 * 119.99781 * 5.54942 * 6 4 2 8 8 Si 1.86793 * 120.00117 * 185.54487 * 6 4 2 9 9 H 1.48500 * 109.47205 * 85.00533 * 8 6 4 10 10 H 1.48501 * 109.47179 * 205.00583 * 8 6 4 11 11 H 1.48501 * 109.47220 * 325.00322 * 8 6 4 12 12 C 1.53004 * 109.47273 * 120.00000 * 2 1 3 13 13 N 1.46496 * 109.47090 * 299.99982 * 12 2 1 14 14 C 1.34774 * 120.00087 * 180.02562 * 13 12 2 15 15 O 1.21281 * 119.99930 * 359.97438 * 14 13 12 16 16 C 1.50701 * 120.00280 * 180.02562 * 14 13 12 17 17 H 1.08998 * 112.74146 * 311.26777 * 16 14 13 18 18 C 1.53633 * 113.56951 * 82.03702 * 16 14 13 19 19 C 1.53514 * 83.53100 * 140.77000 * 18 16 14 20 20 N 1.47470 * 113.47660 * 180.49290 * 16 14 13 21 21 H 1.08993 * 109.47070 * 293.93013 * 1 2 3 22 22 H 1.08994 * 109.47327 * 53.93502 * 1 2 3 23 23 H 1.09004 * 109.46846 * 173.93434 * 1 2 3 24 24 H 1.09000 * 109.47676 * 180.02562 * 3 2 1 25 25 H 1.09007 * 109.46828 * 300.00152 * 3 2 1 26 26 H 1.09000 * 109.47048 * 59.99560 * 3 2 1 27 27 H 0.96999 * 119.99661 * 179.97438 * 7 6 4 28 28 H 1.09007 * 109.46811 * 179.97438 * 12 2 1 29 29 H 1.08998 * 109.46890 * 60.00683 * 12 2 1 30 30 H 0.97005 * 119.99536 * 0.02562 * 13 12 2 31 31 H 1.09001 * 114.16832 * 27.14091 * 18 16 14 32 32 H 1.08997 * 114.20557 * 254.40290 * 18 16 14 33 33 H 1.08999 * 113.47663 * 219.22724 * 19 18 16 34 34 H 1.09001 * 113.47704 * 88.82681 * 19 18 16 35 35 H 1.00895 * 111.00591 * 329.84955 * 20 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6926 -1.5595 -1.1322 6 6 1.6491 -0.2765 -2.4819 7 7 0.9350 0.8208 -2.6072 8 14 2.1441 -1.2471 -3.9991 9 1 1.1619 -2.3362 -4.2323 10 1 2.1708 -0.3439 -5.1776 11 1 3.4932 -1.8328 -3.7938 12 6 2.0400 -0.7213 1.2493 13 7 1.5517 -0.0307 2.4454 14 6 1.8778 -0.4908 3.6695 15 8 2.5750 -1.4769 3.7808 16 6 1.3750 0.2192 4.9000 17 1 1.5381 1.2962 4.8612 18 6 -0.0601 -0.1674 5.2891 19 6 0.4948 -0.1006 6.7189 20 7 1.8269 -0.3984 6.1606 21 1 -0.3633 0.4168 0.9393 22 1 -0.3634 0.6049 -0.8307 23 1 -0.3633 -1.0220 -0.1086 24 1 3.1300 1.4426 -0.0005 25 1 1.6766 1.9563 -0.8900 26 1 1.6766 1.9563 0.8899 27 1 0.6657 1.1263 -3.4875 28 1 3.1301 -0.7216 1.2490 29 1 1.6768 -1.7489 1.2492 30 1 0.9937 0.7578 2.3563 31 1 -0.3547 -1.1674 4.9709 32 1 -0.8052 0.5954 5.0634 33 1 0.1116 -0.8858 7.3705 34 1 0.4232 0.8907 7.1666 35 1 1.9582 -1.3926 6.0494 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000315450455.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:34 Heat of formation + Delta-G solvation = -9.694002 kcal Electronic energy + Delta-G solvation = -16028.219755 eV Core-core repulsion = 13448.115753 eV Total energy + Delta-G solvation = -2580.104003 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.49946 -38.12725 -36.25052 -33.32150 -30.94495 -27.57807 -27.13300 -25.76263 -25.46394 -24.45111 -21.20509 -20.05185 -18.84570 -17.68245 -15.97729 -15.60450 -15.26821 -14.82600 -14.47028 -14.05316 -13.55777 -13.14113 -13.01721 -12.86943 -12.54912 -12.21643 -11.65321 -11.42598 -11.19993 -11.05530 -10.87989 -10.71667 -10.41237 -10.23275 -9.66048 -9.57262 -9.25240 -8.82867 -8.77650 -8.48812 -8.34194 -6.04831 -4.13720 2.87070 3.27657 3.34206 3.37466 3.61552 4.06358 4.26009 4.38705 4.70178 5.08031 5.22403 5.30429 5.41545 5.48139 5.57609 5.79168 5.96019 6.19658 6.28946 6.47678 6.73972 6.78352 6.89337 6.97606 6.98369 7.16428 7.31903 7.52657 7.67602 7.96403 7.99248 8.11347 8.35336 8.61577 8.86528 9.51850 10.97241 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.058551 B = 0.005811 C = 0.005600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.100245 B = 4817.196802 C = 4999.034954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.056 3.944 3 C -0.131 4.131 4 C -0.508 4.508 5 H 0.057 0.943 6 C 0.067 3.933 7 N -0.885 5.885 8 Si 0.893 3.107 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.275 1.275 12 C 0.131 3.869 13 N -0.710 5.710 14 C 0.502 3.498 15 O -0.549 6.549 16 C 0.020 3.980 17 H 0.127 0.873 18 C -0.176 4.176 19 C 0.012 3.988 20 N -0.631 5.631 21 H 0.006 0.994 22 H 0.082 0.918 23 H 0.029 0.971 24 H 0.027 0.973 25 H 0.086 0.914 26 H 0.006 0.994 27 H 0.260 0.740 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.399 0.601 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.099 0.901 35 H 0.350 0.650 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.908 1.515 11.876 12.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.055 3.945 3 C -0.188 4.188 4 C -0.547 4.547 5 H 0.075 0.925 6 C -0.134 4.134 7 N -0.524 5.524 8 Si 0.721 3.279 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.200 1.200 12 C 0.008 3.992 13 N -0.361 5.361 14 C 0.287 3.713 15 O -0.428 6.428 16 C -0.094 4.094 17 H 0.144 0.856 18 C -0.215 4.215 19 C -0.118 4.118 20 N -0.261 5.261 21 H 0.025 0.975 22 H 0.100 0.900 23 H 0.048 0.952 24 H 0.046 0.954 25 H 0.104 0.896 26 H 0.025 0.975 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.234 0.766 31 H 0.109 0.891 32 H 0.101 0.899 33 H 0.091 0.909 34 H 0.117 0.883 35 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -2.876 1.424 12.158 12.575 hybrid contribution -0.740 -0.725 -1.442 1.775 sum -3.617 0.699 10.717 11.332 Atomic orbital electron populations 1.21805 0.97726 1.00138 0.98978 1.18363 0.92770 0.92796 0.90582 1.21853 0.98664 0.98283 1.00042 1.20964 1.29399 1.14371 0.89934 0.92452 1.24877 0.94956 0.94767 0.98814 1.69826 1.37834 1.21382 1.23318 0.86590 0.79055 0.79908 0.82340 1.20625 1.21305 1.19954 1.21733 0.98214 0.95782 0.83423 1.46289 1.52140 1.31690 1.05933 1.20514 0.80816 0.84981 0.85030 1.90671 1.38471 1.26894 1.86722 1.23264 0.94434 1.01492 0.90231 0.85578 1.24331 0.96699 1.03381 0.97087 1.23447 0.89829 1.02903 0.95669 1.65645 1.29735 1.19575 1.11126 0.97473 0.89968 0.95212 0.95403 0.89556 0.97546 0.92987 0.92648 0.92735 0.76585 0.89139 0.89910 0.90928 0.88285 0.83227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.85 8.03 37.16 0.30 -2.55 16 2 C 0.06 1.28 0.50 -155.66 -0.08 1.20 16 3 C -0.13 -2.92 8.11 37.16 0.30 -2.62 16 4 C -0.51 -13.26 8.01 -34.44 -0.28 -13.54 16 5 H 0.06 1.52 7.75 -52.49 -0.41 1.11 16 6 C 0.07 1.76 5.13 -17.82 -0.09 1.67 16 7 N -0.89 -23.44 9.45 55.43 0.52 -22.92 16 8 Si 0.89 20.65 29.54 -169.99 -5.02 15.63 16 9 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 11 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 12 C 0.13 2.77 4.50 -4.04 -0.02 2.75 16 13 N -0.71 -12.42 4.90 -60.29 -0.30 -12.72 16 14 C 0.50 8.62 7.38 -10.99 -0.08 8.54 16 15 O -0.55 -11.47 16.01 5.56 0.09 -11.38 16 16 C 0.02 0.25 4.50 -72.54 -0.33 -0.07 16 17 H 0.13 1.43 8.14 -51.93 -0.42 1.01 16 18 C -0.18 -1.81 7.97 -26.14 -0.21 -2.02 16 19 C 0.01 0.11 8.61 -7.56 -0.07 0.05 16 20 N -0.63 -8.19 8.58 -116.55 -1.00 -9.19 16 21 H 0.01 0.12 6.71 -51.93 -0.35 -0.23 16 22 H 0.08 2.00 6.25 -51.93 -0.32 1.68 16 23 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.09 2.13 6.10 -51.92 -0.32 1.82 16 26 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 27 H 0.26 6.66 8.31 -40.82 -0.34 6.32 16 28 H 0.06 1.25 8.14 -51.92 -0.42 0.82 16 29 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.40 6.23 6.16 -40.82 -0.25 5.98 16 31 H 0.09 1.00 8.12 -51.93 -0.42 0.58 16 32 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.35 4.86 7.83 -39.29 -0.31 4.55 16 LS Contribution 281.78 15.07 4.25 4.25 Total: -1.00 -28.46 281.78 -7.25 -35.71 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -5.25 Total: 7.22 kcal Atomic # 6 Polarization: -6.04 SS G_CDS: -0.55 Total: -6.59 kcal Atomic # 7 Polarization: -44.06 SS G_CDS: -0.77 Total: -44.84 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.09 Total: -11.38 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -28.46 -7.25 -35.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315450455.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.015 kcal (2) G-P(sol) polarization free energy of solvation -28.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds