Wall clock time and date at job start Mon Mar 30 2020 03:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47230 * 2 1 4 4 C 1.50706 * 109.47383 * 240.00069 * 2 1 3 5 5 H 1.07999 * 120.00377 * 237.00873 * 4 2 1 6 6 C 1.37880 * 120.00003 * 56.99993 * 4 2 1 7 7 N 1.31522 * 119.99781 * 5.54942 * 6 4 2 8 8 Si 1.86793 * 120.00117 * 185.54487 * 6 4 2 9 9 H 1.48500 * 109.47205 * 85.00533 * 8 6 4 10 10 H 1.48501 * 109.47179 * 205.00583 * 8 6 4 11 11 H 1.48501 * 109.47220 * 325.00322 * 8 6 4 12 12 C 1.53004 * 109.47273 * 120.00000 * 2 1 3 13 13 N 1.46496 * 109.47090 * 299.99982 * 12 2 1 14 14 C 1.34774 * 120.00087 * 180.02562 * 13 12 2 15 15 O 1.21281 * 119.99930 * 359.97438 * 14 13 12 16 16 C 1.50701 * 120.00280 * 180.02562 * 14 13 12 17 17 H 1.08998 * 112.74146 * 311.26777 * 16 14 13 18 18 C 1.53633 * 113.56951 * 82.03702 * 16 14 13 19 19 C 1.53514 * 83.53100 * 140.77000 * 18 16 14 20 20 N 1.47470 * 113.47660 * 180.49290 * 16 14 13 21 21 H 1.08993 * 109.47070 * 293.93013 * 1 2 3 22 22 H 1.08994 * 109.47327 * 53.93502 * 1 2 3 23 23 H 1.09004 * 109.46846 * 173.93434 * 1 2 3 24 24 H 1.09000 * 109.47676 * 180.02562 * 3 2 1 25 25 H 1.09007 * 109.46828 * 300.00152 * 3 2 1 26 26 H 1.09000 * 109.47048 * 59.99560 * 3 2 1 27 27 H 0.96999 * 119.99661 * 179.97438 * 7 6 4 28 28 H 1.09007 * 109.46811 * 179.97438 * 12 2 1 29 29 H 1.08998 * 109.46890 * 60.00683 * 12 2 1 30 30 H 0.97005 * 119.99536 * 0.02562 * 13 12 2 31 31 H 1.09001 * 114.16832 * 27.14091 * 18 16 14 32 32 H 1.08997 * 114.20557 * 254.40290 * 18 16 14 33 33 H 1.08999 * 113.47663 * 219.22724 * 19 18 16 34 34 H 1.09001 * 113.47704 * 88.82681 * 19 18 16 35 35 H 1.00895 * 111.00591 * 329.84955 * 20 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6926 -1.5595 -1.1322 6 6 1.6491 -0.2765 -2.4819 7 7 0.9350 0.8208 -2.6072 8 14 2.1441 -1.2471 -3.9991 9 1 1.1619 -2.3362 -4.2323 10 1 2.1708 -0.3439 -5.1776 11 1 3.4932 -1.8328 -3.7938 12 6 2.0400 -0.7213 1.2493 13 7 1.5517 -0.0307 2.4454 14 6 1.8778 -0.4908 3.6695 15 8 2.5750 -1.4769 3.7808 16 6 1.3750 0.2192 4.9000 17 1 1.5381 1.2962 4.8612 18 6 -0.0601 -0.1674 5.2891 19 6 0.4948 -0.1006 6.7189 20 7 1.8269 -0.3984 6.1606 21 1 -0.3633 0.4168 0.9393 22 1 -0.3634 0.6049 -0.8307 23 1 -0.3633 -1.0220 -0.1086 24 1 3.1300 1.4426 -0.0005 25 1 1.6766 1.9563 -0.8900 26 1 1.6766 1.9563 0.8899 27 1 0.6657 1.1263 -3.4875 28 1 3.1301 -0.7216 1.2490 29 1 1.6768 -1.7489 1.2492 30 1 0.9937 0.7578 2.3563 31 1 -0.3547 -1.1674 4.9709 32 1 -0.8052 0.5954 5.0634 33 1 0.1116 -0.8858 7.3705 34 1 0.4232 0.8907 7.1666 35 1 1.9582 -1.3926 6.0494 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000315450455.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:34 Heat of formation + Delta-G solvation = -30.861257 kcal Electronic energy + Delta-G solvation = -16029.137636 eV Core-core repulsion = 13448.115753 eV Total energy + Delta-G solvation = -2581.021884 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.63535 -39.44277 -37.93808 -35.03150 -32.78510 -28.78727 -28.05481 -27.57508 -27.34504 -26.00702 -22.31074 -21.19463 -20.61821 -19.00785 -17.79614 -17.00118 -16.64620 -16.51191 -15.67071 -15.53004 -14.87533 -14.61135 -14.37806 -14.11705 -13.91928 -13.77449 -13.23611 -13.09411 -12.71868 -12.61786 -12.55558 -12.24817 -12.14971 -11.83133 -11.49618 -11.29564 -10.80196 -10.66195 -10.40184 -10.00103 -9.67900 -8.04121 -6.18591 1.42193 1.44913 1.52331 1.54839 2.24813 2.48085 3.12566 3.19920 3.38540 3.73333 4.00145 4.40579 4.47626 4.50308 4.62287 4.69916 4.70955 4.85068 4.93487 4.98441 5.04421 5.10186 5.17562 5.19651 5.33881 5.56130 5.66067 5.67316 6.13133 6.16310 6.20011 6.41867 6.62199 6.85017 7.24779 7.48804 8.95345 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.058551 B = 0.005811 C = 0.005600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.100245 B = 4817.196802 C = 4999.034954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.051 3.949 3 C -0.121 4.121 4 C -0.532 4.532 5 H 0.042 0.958 6 C 0.030 3.970 7 N -0.898 5.898 8 Si 0.944 3.056 9 H -0.278 1.278 10 H -0.282 1.282 11 H -0.277 1.277 12 C 0.147 3.853 13 N -0.703 5.703 14 C 0.500 3.500 15 O -0.591 6.591 16 C 0.021 3.979 17 H 0.149 0.851 18 C -0.166 4.166 19 C 0.019 3.981 20 N -0.651 5.651 21 H 0.041 0.959 22 H 0.060 0.940 23 H 0.017 0.983 24 H 0.016 0.984 25 H 0.063 0.937 26 H 0.039 0.961 27 H 0.261 0.739 28 H 0.035 0.965 29 H 0.038 0.962 30 H 0.411 0.589 31 H 0.079 0.921 32 H 0.108 0.892 33 H 0.086 0.914 34 H 0.119 0.881 35 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.968 2.438 13.140 14.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.050 3.950 3 C -0.179 4.179 4 C -0.570 4.570 5 H 0.061 0.939 6 C -0.170 4.170 7 N -0.536 5.536 8 Si 0.771 3.229 9 H -0.204 1.204 10 H -0.208 1.208 11 H -0.202 1.202 12 C 0.023 3.977 13 N -0.354 5.354 14 C 0.287 3.713 15 O -0.472 6.472 16 C -0.092 4.092 17 H 0.167 0.833 18 C -0.204 4.204 19 C -0.110 4.110 20 N -0.281 5.281 21 H 0.059 0.941 22 H 0.079 0.921 23 H 0.036 0.964 24 H 0.035 0.965 25 H 0.082 0.918 26 H 0.057 0.943 27 H 0.070 0.930 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.248 0.752 31 H 0.098 0.902 32 H 0.126 0.874 33 H 0.105 0.895 34 H 0.137 0.863 35 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -3.960 2.377 13.437 14.209 hybrid contribution -0.394 -1.020 -1.793 2.100 sum -4.353 1.358 11.644 12.505 Atomic orbital electron populations 1.21641 0.96854 0.99210 0.99873 1.18365 0.93396 0.93025 0.90207 1.21695 0.97882 0.97816 1.00481 1.21254 1.29618 1.14456 0.91717 0.93932 1.25433 0.95150 0.95545 1.00850 1.69923 1.38102 1.21882 1.23696 0.85796 0.78492 0.78855 0.79793 1.20380 1.20799 1.20245 1.21262 0.96867 0.95123 0.84419 1.46098 1.52311 1.31852 1.05154 1.21350 0.79673 0.84425 0.85869 1.90652 1.40292 1.28928 1.87336 1.23439 0.96188 1.01941 0.87662 0.83312 1.24280 0.95457 1.03490 0.97221 1.23564 0.87519 1.04481 0.95453 1.65698 1.32150 1.18959 1.11281 0.94059 0.92104 0.96351 0.96473 0.91848 0.94252 0.92992 0.94654 0.94388 0.75154 0.90241 0.87392 0.89523 0.86259 0.84240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.11 8.03 71.98 0.58 -4.53 16 2 C 0.05 2.32 0.50 -52.93 -0.03 2.29 16 3 C -0.12 -5.31 8.11 71.98 0.58 -4.73 16 4 C -0.53 -28.13 8.01 25.60 0.21 -27.93 16 5 H 0.04 2.31 7.75 -2.91 -0.02 2.29 16 6 C 0.03 1.59 5.13 84.65 0.43 2.03 16 7 N -0.90 -47.51 9.45 21.45 0.20 -47.31 16 8 Si 0.94 42.51 29.54 68.60 2.03 44.54 16 9 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 10 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 11 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 12 C 0.15 6.25 4.50 86.38 0.39 6.64 16 13 N -0.70 -23.59 4.90 -463.06 -2.27 -25.86 16 14 C 0.50 16.59 7.38 87.66 0.65 17.24 16 15 O -0.59 -24.80 16.01 -3.03 -0.05 -24.85 16 16 C 0.02 0.49 4.50 41.48 0.19 0.68 16 17 H 0.15 2.80 8.14 -2.39 -0.02 2.78 16 18 C -0.17 -2.85 7.97 30.98 0.25 -2.60 16 19 C 0.02 0.30 8.61 83.57 0.72 1.02 16 20 N -0.65 -15.60 8.58 -522.66 -4.48 -20.09 16 21 H 0.04 1.46 6.71 -2.39 -0.02 1.44 16 22 H 0.06 2.92 6.25 -2.39 -0.01 2.90 16 23 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 24 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.06 3.10 6.10 -2.38 -0.01 3.09 16 26 H 0.04 1.42 6.86 -2.39 -0.02 1.40 16 27 H 0.26 13.29 8.31 -92.71 -0.77 12.52 16 28 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 29 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.41 11.69 6.16 -92.70 -0.57 11.11 16 31 H 0.08 1.57 8.12 -2.39 -0.02 1.55 16 32 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.34 9.17 7.83 -89.70 -0.70 8.47 16 Total: -1.00 -61.64 281.78 -0.79 -62.44 By element: Atomic # 1 Polarization: 21.20 SS G_CDS: -0.18 Total: 21.02 kcal Atomic # 6 Polarization: -13.85 SS G_CDS: 3.96 Total: -9.89 kcal Atomic # 7 Polarization: -86.70 SS G_CDS: -6.55 Total: -93.25 kcal Atomic # 8 Polarization: -24.80 SS G_CDS: -0.05 Total: -24.85 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.54 kcal Total: -61.64 -0.79 -62.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315450455.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.576 kcal (2) G-P(sol) polarization free energy of solvation -61.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds