Wall clock time and date at job start Mon Mar 30 2020 03:29:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.52998 * 109.47230 * 2 1
4 4 C 1.50706 * 109.47383 * 240.00069 * 2 1 3
5 5 H 1.07999 * 120.00377 * 237.00873 * 4 2 1
6 6 C 1.37880 * 120.00003 * 56.99993 * 4 2 1
7 7 N 1.31522 * 119.99781 * 5.54942 * 6 4 2
8 8 Si 1.86793 * 120.00117 * 185.54487 * 6 4 2
9 9 H 1.48500 * 109.47205 * 85.00533 * 8 6 4
10 10 H 1.48501 * 109.47179 * 205.00583 * 8 6 4
11 11 H 1.48501 * 109.47220 * 325.00322 * 8 6 4
12 12 C 1.53004 * 109.47273 * 120.00000 * 2 1 3
13 13 N 1.46496 * 109.47090 * 299.99982 * 12 2 1
14 14 C 1.34774 * 120.00087 * 180.02562 * 13 12 2
15 15 O 1.21281 * 119.99930 * 359.97438 * 14 13 12
16 16 C 1.50701 * 120.00280 * 180.02562 * 14 13 12
17 17 H 1.08998 * 112.74146 * 311.26777 * 16 14 13
18 18 C 1.53633 * 113.56951 * 82.03702 * 16 14 13
19 19 C 1.53514 * 83.53100 * 140.77000 * 18 16 14
20 20 N 1.47470 * 113.47660 * 180.49290 * 16 14 13
21 21 H 1.08993 * 109.47070 * 293.93013 * 1 2 3
22 22 H 1.08994 * 109.47327 * 53.93502 * 1 2 3
23 23 H 1.09004 * 109.46846 * 173.93434 * 1 2 3
24 24 H 1.09000 * 109.47676 * 180.02562 * 3 2 1
25 25 H 1.09007 * 109.46828 * 300.00152 * 3 2 1
26 26 H 1.09000 * 109.47048 * 59.99560 * 3 2 1
27 27 H 0.96999 * 119.99661 * 179.97438 * 7 6 4
28 28 H 1.09007 * 109.46811 * 179.97438 * 12 2 1
29 29 H 1.08998 * 109.46890 * 60.00683 * 12 2 1
30 30 H 0.97005 * 119.99536 * 0.02562 * 13 12 2
31 31 H 1.09001 * 114.16832 * 27.14091 * 18 16 14
32 32 H 1.08997 * 114.20557 * 254.40290 * 18 16 14
33 33 H 1.08999 * 113.47663 * 219.22724 * 19 18 16
34 34 H 1.09001 * 113.47704 * 88.82681 * 19 18 16
35 35 H 1.00895 * 111.00591 * 329.84955 * 20 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0324 -0.7104 -1.2305
5 1 2.6926 -1.5595 -1.1322
6 6 1.6491 -0.2765 -2.4819
7 7 0.9350 0.8208 -2.6072
8 14 2.1441 -1.2471 -3.9991
9 1 1.1619 -2.3362 -4.2323
10 1 2.1708 -0.3439 -5.1776
11 1 3.4932 -1.8328 -3.7938
12 6 2.0400 -0.7213 1.2493
13 7 1.5517 -0.0307 2.4454
14 6 1.8778 -0.4908 3.6695
15 8 2.5750 -1.4769 3.7808
16 6 1.3750 0.2192 4.9000
17 1 1.5381 1.2962 4.8612
18 6 -0.0601 -0.1674 5.2891
19 6 0.4948 -0.1006 6.7189
20 7 1.8269 -0.3984 6.1606
21 1 -0.3633 0.4168 0.9393
22 1 -0.3634 0.6049 -0.8307
23 1 -0.3633 -1.0220 -0.1086
24 1 3.1300 1.4426 -0.0005
25 1 1.6766 1.9563 -0.8900
26 1 1.6766 1.9563 0.8899
27 1 0.6657 1.1263 -3.4875
28 1 3.1301 -0.7216 1.2490
29 1 1.6768 -1.7489 1.2492
30 1 0.9937 0.7578 2.3563
31 1 -0.3547 -1.1674 4.9709
32 1 -0.8052 0.5954 5.0634
33 1 0.1116 -0.8858 7.3705
34 1 0.4232 0.8907 7.1666
35 1 1.9582 -1.3926 6.0494
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000315450455.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:29:34
Heat of formation + Delta-G solvation = -30.861257 kcal
Electronic energy + Delta-G solvation = -16029.137636 eV
Core-core repulsion = 13448.115753 eV
Total energy + Delta-G solvation = -2581.021884 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 226.142 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-41.63535 -39.44277 -37.93808 -35.03150 -32.78510 -28.78727 -28.05481 -27.57508
-27.34504 -26.00702 -22.31074 -21.19463 -20.61821 -19.00785 -17.79614 -17.00118
-16.64620 -16.51191 -15.67071 -15.53004 -14.87533 -14.61135 -14.37806 -14.11705
-13.91928 -13.77449 -13.23611 -13.09411 -12.71868 -12.61786 -12.55558 -12.24817
-12.14971 -11.83133 -11.49618 -11.29564 -10.80196 -10.66195 -10.40184 -10.00103
-9.67900 -8.04121 -6.18591 1.42193 1.44913 1.52331 1.54839 2.24813
2.48085 3.12566 3.19920 3.38540 3.73333 4.00145 4.40579 4.47626
4.50308 4.62287 4.69916 4.70955 4.85068 4.93487 4.98441 5.04421
5.10186 5.17562 5.19651 5.33881 5.56130 5.66067 5.67316 6.13133
6.16310 6.20011 6.41867 6.62199 6.85017 7.24779 7.48804 8.95345
Molecular weight = 226.14amu
Principal moments of inertia in cm(-1)
A = 0.058551 B = 0.005811 C = 0.005600
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 478.100245 B = 4817.196802 C = 4999.034954
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.118 4.118
2 C 0.051 3.949
3 C -0.121 4.121
4 C -0.532 4.532
5 H 0.042 0.958
6 C 0.030 3.970
7 N -0.898 5.898
8 Si 0.944 3.056
9 H -0.278 1.278
10 H -0.282 1.282
11 H -0.277 1.277
12 C 0.147 3.853
13 N -0.703 5.703
14 C 0.500 3.500
15 O -0.591 6.591
16 C 0.021 3.979
17 H 0.149 0.851
18 C -0.166 4.166
19 C 0.019 3.981
20 N -0.651 5.651
21 H 0.041 0.959
22 H 0.060 0.940
23 H 0.017 0.983
24 H 0.016 0.984
25 H 0.063 0.937
26 H 0.039 0.961
27 H 0.261 0.739
28 H 0.035 0.965
29 H 0.038 0.962
30 H 0.411 0.589
31 H 0.079 0.921
32 H 0.108 0.892
33 H 0.086 0.914
34 H 0.119 0.881
35 H 0.341 0.659
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.968 2.438 13.140 14.258
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.176 4.176
2 C 0.050 3.950
3 C -0.179 4.179
4 C -0.570 4.570
5 H 0.061 0.939
6 C -0.170 4.170
7 N -0.536 5.536
8 Si 0.771 3.229
9 H -0.204 1.204
10 H -0.208 1.208
11 H -0.202 1.202
12 C 0.023 3.977
13 N -0.354 5.354
14 C 0.287 3.713
15 O -0.472 6.472
16 C -0.092 4.092
17 H 0.167 0.833
18 C -0.204 4.204
19 C -0.110 4.110
20 N -0.281 5.281
21 H 0.059 0.941
22 H 0.079 0.921
23 H 0.036 0.964
24 H 0.035 0.965
25 H 0.082 0.918
26 H 0.057 0.943
27 H 0.070 0.930
28 H 0.053 0.947
29 H 0.056 0.944
30 H 0.248 0.752
31 H 0.098 0.902
32 H 0.126 0.874
33 H 0.105 0.895
34 H 0.137 0.863
35 H 0.158 0.842
Dipole moment (debyes) X Y Z Total
from point charges -3.960 2.377 13.437 14.209
hybrid contribution -0.394 -1.020 -1.793 2.100
sum -4.353 1.358 11.644 12.505
Atomic orbital electron populations
1.21641 0.96854 0.99210 0.99873 1.18365 0.93396 0.93025 0.90207
1.21695 0.97882 0.97816 1.00481 1.21254 1.29618 1.14456 0.91717
0.93932 1.25433 0.95150 0.95545 1.00850 1.69923 1.38102 1.21882
1.23696 0.85796 0.78492 0.78855 0.79793 1.20380 1.20799 1.20245
1.21262 0.96867 0.95123 0.84419 1.46098 1.52311 1.31852 1.05154
1.21350 0.79673 0.84425 0.85869 1.90652 1.40292 1.28928 1.87336
1.23439 0.96188 1.01941 0.87662 0.83312 1.24280 0.95457 1.03490
0.97221 1.23564 0.87519 1.04481 0.95453 1.65698 1.32150 1.18959
1.11281 0.94059 0.92104 0.96351 0.96473 0.91848 0.94252 0.92992
0.94654 0.94388 0.75154 0.90241 0.87392 0.89523 0.86259 0.84240
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -5.11 8.03 71.98 0.58 -4.53 16
2 C 0.05 2.32 0.50 -52.93 -0.03 2.29 16
3 C -0.12 -5.31 8.11 71.98 0.58 -4.73 16
4 C -0.53 -28.13 8.01 25.60 0.21 -27.93 16
5 H 0.04 2.31 7.75 -2.91 -0.02 2.29 16
6 C 0.03 1.59 5.13 84.65 0.43 2.03 16
7 N -0.90 -47.51 9.45 21.45 0.20 -47.31 16
8 Si 0.94 42.51 29.54 68.60 2.03 44.54 16
9 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16
10 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16
11 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16
12 C 0.15 6.25 4.50 86.38 0.39 6.64 16
13 N -0.70 -23.59 4.90 -463.06 -2.27 -25.86 16
14 C 0.50 16.59 7.38 87.66 0.65 17.24 16
15 O -0.59 -24.80 16.01 -3.03 -0.05 -24.85 16
16 C 0.02 0.49 4.50 41.48 0.19 0.68 16
17 H 0.15 2.80 8.14 -2.39 -0.02 2.78 16
18 C -0.17 -2.85 7.97 30.98 0.25 -2.60 16
19 C 0.02 0.30 8.61 83.57 0.72 1.02 16
20 N -0.65 -15.60 8.58 -522.66 -4.48 -20.09 16
21 H 0.04 1.46 6.71 -2.39 -0.02 1.44 16
22 H 0.06 2.92 6.25 -2.39 -0.01 2.90 16
23 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16
24 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16
25 H 0.06 3.10 6.10 -2.38 -0.01 3.09 16
26 H 0.04 1.42 6.86 -2.39 -0.02 1.40 16
27 H 0.26 13.29 8.31 -92.71 -0.77 12.52 16
28 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16
29 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16
30 H 0.41 11.69 6.16 -92.70 -0.57 11.11 16
31 H 0.08 1.57 8.12 -2.39 -0.02 1.55 16
32 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16
33 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16
34 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16
35 H 0.34 9.17 7.83 -89.70 -0.70 8.47 16
Total: -1.00 -61.64 281.78 -0.79 -62.44
By element:
Atomic # 1 Polarization: 21.20 SS G_CDS: -0.18 Total: 21.02 kcal
Atomic # 6 Polarization: -13.85 SS G_CDS: 3.96 Total: -9.89 kcal
Atomic # 7 Polarization: -86.70 SS G_CDS: -6.55 Total: -93.25 kcal
Atomic # 8 Polarization: -24.80 SS G_CDS: -0.05 Total: -24.85 kcal
Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.54 kcal
Total: -61.64 -0.79 -62.44 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000315450455.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 31.576 kcal
(2) G-P(sol) polarization free energy of solvation -61.644 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.068 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.794 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.437 kcal
(6) G-S(sol) free energy of system = (1) + (5) -30.861 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds