Wall clock time and date at job start Mon Mar 30 2020 03:29:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.52999 * 109.47441 * 2 1
4 4 C 1.50700 * 109.47304 * 239.99709 * 2 1 3
5 5 H 1.07997 * 120.00434 * 241.34505 * 4 2 1
6 6 C 1.37883 * 119.99889 * 61.34735 * 4 2 1
7 7 N 1.31517 * 120.00045 * 193.97601 * 6 4 2
8 8 Si 1.86797 * 119.99709 * 13.98058 * 6 4 2
9 9 H 1.48499 * 109.47543 * 84.54937 * 8 6 4
10 10 H 1.48501 * 109.47187 * 204.54753 * 8 6 4
11 11 H 1.48500 * 109.47515 * 324.54343 * 8 6 4
12 12 C 1.53005 * 109.47113 * 119.99860 * 2 1 3
13 13 N 1.46500 * 109.47013 * 299.99922 * 12 2 1
14 14 C 1.34768 * 119.99888 * 179.97438 * 13 12 2
15 15 O 1.21289 * 120.00368 * 0.02562 * 14 13 12
16 16 C 1.50704 * 120.00284 * 180.02562 * 14 13 12
17 17 H 1.08997 * 112.78691 * 48.69353 * 16 14 13
18 18 C 1.53510 * 113.47059 * 277.88540 * 16 14 13
19 19 C 1.53507 * 83.57768 * 271.25461 * 18 16 14
20 20 N 1.47472 * 113.47840 * 179.50680 * 16 14 13
21 21 H 1.09000 * 109.46818 * 309.36950 * 1 2 3
22 22 H 1.09004 * 109.46621 * 69.36440 * 1 2 3
23 23 H 1.08997 * 109.46874 * 189.36826 * 1 2 3
24 24 H 1.09001 * 109.47239 * 180.02562 * 3 2 1
25 25 H 1.08999 * 109.47123 * 299.99960 * 3 2 1
26 26 H 1.08994 * 109.47281 * 59.99819 * 3 2 1
27 27 H 0.97001 * 119.99703 * 179.97438 * 7 6 4
28 28 H 1.09001 * 109.47131 * 179.97438 * 12 2 1
29 29 H 1.09002 * 109.46850 * 60.00150 * 12 2 1
30 30 H 0.97000 * 120.00233 * 0.02562 * 13 12 2
31 31 H 1.09007 * 114.16874 * 157.60571 * 18 16 14
32 32 H 1.09005 * 114.35007 * 24.91649 * 18 16 14
33 33 H 1.09000 * 113.48114 * 219.21472 * 19 18 16
34 34 H 1.08993 * 113.47810 * 88.74604 * 19 18 16
35 35 H 1.00898 * 111.00155 * 336.05789 * 20 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 6 2.0324 -0.7105 -1.2304
5 1 2.6352 -1.6010 -1.1315
6 6 1.7224 -0.2234 -2.4826
7 7 1.9158 -0.9727 -3.5460
8 14 1.0277 1.5006 -2.6684
9 1 2.1418 2.4816 -2.7084
10 1 0.2471 1.5865 -3.9288
11 1 0.1418 1.8043 -1.5160
12 6 2.0400 -0.7212 1.2493
13 7 1.5517 -0.0306 2.4454
14 6 1.8768 -0.4913 3.6695
15 8 2.5741 -1.4774 3.7809
16 6 1.3741 0.2188 4.9000
17 1 0.3043 0.4242 4.8614
18 6 2.2179 1.4410 5.2883
19 6 3.0263 0.4122 6.0910
20 7 1.8059 -0.4130 6.1606
21 1 -0.3633 0.6519 0.7945
22 1 -0.3633 0.3622 -0.9618
23 1 -0.3633 -1.0139 0.1673
24 1 3.1301 1.4424 -0.0005
25 1 1.6768 1.9563 -0.8900
26 1 1.6768 1.9563 0.8899
27 1 1.6974 -0.6301 -4.4268
28 1 3.1300 -0.7216 1.2491
29 1 1.6767 -1.7489 1.2493
30 1 0.9937 0.7579 2.3564
31 1 1.6900 2.1710 5.9020
32 1 2.7653 1.8907 4.4599
33 1 3.3568 0.7814 7.0619
34 1 3.8308 -0.0499 5.5190
35 1 2.0208 -1.3889 6.0209
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000315450457.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:29:37
Heat of formation + Delta-G solvation = 6.203213 kcal
Electronic energy + Delta-G solvation = -16208.349547 eV
Core-core repulsion = 13628.934900 eV
Total energy + Delta-G solvation = -2579.414648 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 226.142 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-40.76867 -38.09760 -36.52858 -33.44338 -31.56739 -27.94787 -27.34485 -26.44707
-25.48632 -24.68224 -21.58259 -19.57170 -19.02072 -17.62671 -16.47033 -16.13962
-15.67264 -15.14861 -14.84666 -14.44193 -13.67267 -13.30563 -13.05030 -12.88901
-12.63430 -12.28044 -12.09703 -12.07483 -11.42892 -11.36219 -10.82558 -10.50184
-10.39259 -10.22702 -10.12745 -10.08339 -9.23662 -9.01075 -8.73233 -8.66146
-8.50097 -6.19125 -4.16858 2.68648 3.20113 3.26958 3.35230 3.43194
4.08259 4.30776 4.31210 4.79018 4.95497 5.11378 5.23937 5.36691
5.59067 5.61716 5.69459 5.77567 5.90990 5.98186 5.99082 6.29361
6.39920 6.45459 6.55982 6.62495 6.67606 6.88504 7.03948 7.15169
7.36603 7.66510 7.77932 8.36152 8.43768 8.85868 9.44419 10.93931
Molecular weight = 226.14amu
Principal moments of inertia in cm(-1)
A = 0.053202 B = 0.006586 C = 0.006262
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 526.165892 B = 4250.417512 C = 4470.012415
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C 0.029 3.971
3 C -0.148 4.148
4 C -0.515 4.515
5 H 0.076 0.924
6 C 0.076 3.924
7 N -0.890 5.890
8 Si 0.885 3.115
9 H -0.286 1.286
10 H -0.305 1.305
11 H -0.249 1.249
12 C 0.140 3.860
13 N -0.712 5.712
14 C 0.499 3.501
15 O -0.549 6.549
16 C 0.004 3.996
17 H 0.115 0.885
18 C -0.131 4.131
19 C -0.002 4.002
20 N -0.607 5.607
21 H 0.022 0.978
22 H 0.057 0.943
23 H 0.047 0.953
24 H 0.053 0.947
25 H 0.042 0.958
26 H 0.029 0.971
27 H 0.265 0.735
28 H 0.062 0.938
29 H 0.064 0.936
30 H 0.399 0.601
31 H 0.101 0.899
32 H 0.079 0.921
33 H 0.085 0.915
34 H 0.073 0.927
35 H 0.334 0.666
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.903 6.867 14.186 15.876
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C 0.027 3.973
3 C -0.205 4.205
4 C -0.553 4.553
5 H 0.094 0.906
6 C -0.127 4.127
7 N -0.527 5.527
8 Si 0.718 3.282
9 H -0.213 1.213
10 H -0.233 1.233
11 H -0.175 1.175
12 C 0.018 3.982
13 N -0.362 5.362
14 C 0.282 3.718
15 O -0.428 6.428
16 C -0.111 4.111
17 H 0.133 0.867
18 C -0.169 4.169
19 C -0.132 4.132
20 N -0.234 5.234
21 H 0.041 0.959
22 H 0.076 0.924
23 H 0.066 0.934
24 H 0.072 0.928
25 H 0.060 0.940
26 H 0.048 0.952
27 H 0.075 0.925
28 H 0.081 0.919
29 H 0.082 0.918
30 H 0.234 0.766
31 H 0.119 0.881
32 H 0.098 0.902
33 H 0.103 0.897
34 H 0.091 0.909
35 H 0.150 0.850
Dipole moment (debyes) X Y Z Total
from point charges -1.912 6.390 14.705 16.147
hybrid contribution -0.031 0.899 -1.170 1.476
sum -1.943 7.290 13.534 15.495
Atomic orbital electron populations
1.22304 0.97792 0.99874 1.00044 1.18722 0.92554 0.92269 0.93720
1.22363 1.01195 0.98287 0.98638 1.20705 1.34207 1.12373 0.87985
0.90569 1.24977 0.94635 0.97324 0.95771 1.69951 1.48025 1.35922
0.98756 0.87290 0.79347 0.85497 0.76059 1.21333 1.23326 1.17514
1.21564 0.98642 0.95900 0.82103 1.46267 1.52311 1.31602 1.06023
1.20772 0.80784 0.84919 0.85318 1.90691 1.38679 1.26747 1.86686
1.23100 1.02402 0.96242 0.89338 0.86724 1.23127 0.97783 0.95559
1.00414 1.23567 0.93964 0.94752 1.00936 1.67521 1.19979 1.09410
1.26477 0.95906 0.92446 0.93380 0.92788 0.93964 0.95156 0.92501
0.91918 0.91775 0.76627 0.88095 0.90197 0.89689 0.90900 0.85024
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.84 7.53 37.16 0.28 -2.56 16
2 C 0.03 0.61 0.50 -155.66 -0.08 0.53 16
3 C -0.15 -2.90 7.52 37.16 0.28 -2.62 16
4 C -0.51 -13.64 8.62 -34.44 -0.30 -13.94 16
5 H 0.08 2.23 7.99 -52.49 -0.42 1.81 16
6 C 0.08 2.08 5.32 -17.82 -0.09 1.99 16
7 N -0.89 -26.37 13.96 55.43 0.77 -25.60 16
8 Si 0.89 20.76 22.79 -169.99 -3.87 16.89 16
9 H -0.29 -6.67 7.10 56.52 0.40 -6.27 16
10 H -0.30 -7.33 7.11 56.52 0.40 -6.93 16
11 H -0.25 -5.28 4.65 56.52 0.26 -5.02 16
12 C 0.14 2.74 4.49 -4.04 -0.02 2.72 16
13 N -0.71 -11.13 5.00 -60.29 -0.30 -11.43 16
14 C 0.50 7.75 6.98 -10.99 -0.08 7.67 16
15 O -0.55 -10.51 15.37 5.55 0.09 -10.42 16
16 C 0.00 0.05 4.84 -72.59 -0.35 -0.30 16
17 H 0.11 1.20 8.14 -51.93 -0.42 0.77 16
18 C -0.13 -1.30 8.05 -26.20 -0.21 -1.51 16
19 C 0.00 -0.02 8.18 -7.55 -0.06 -0.08 16
20 N -0.61 -7.53 8.64 -116.72 -1.01 -8.54 16
21 H 0.02 0.37 7.13 -51.93 -0.37 0.00 16
22 H 0.06 1.22 4.30 -51.93 -0.22 1.00 16
23 H 0.05 0.95 8.12 -51.93 -0.42 0.53 16
24 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16
25 H 0.04 0.88 2.25 -51.93 -0.12 0.77 16
26 H 0.03 0.48 6.86 -51.93 -0.36 0.13 16
27 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16
28 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16
29 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16
30 H 0.40 5.36 6.26 -40.82 -0.26 5.11 16
31 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16
32 H 0.08 0.78 8.11 -51.93 -0.42 0.36 16
33 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16
34 H 0.07 0.91 7.65 -51.93 -0.40 0.51 16
35 H 0.33 4.52 7.72 -39.29 -0.30 4.22 16
LS Contribution 270.20 15.07 4.07 4.07
Total: -1.00 -29.91 270.20 -5.98 -35.89
By element:
Atomic # 1 Polarization: 12.35 SS G_CDS: -5.09 Total: 7.25 kcal
Atomic # 6 Polarization: -7.47 SS G_CDS: -0.63 Total: -8.10 kcal
Atomic # 7 Polarization: -45.04 SS G_CDS: -0.54 Total: -45.57 kcal
Atomic # 8 Polarization: -10.51 SS G_CDS: 0.09 Total: -10.42 kcal
Atomic # 14 Polarization: 20.76 SS G_CDS: -3.87 Total: 16.89 kcal
Total LS contribution 4.07 Total: 4.07 kcal
Total: -29.91 -5.98 -35.89 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000315450457.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 42.092 kcal
(2) G-P(sol) polarization free energy of solvation -29.911 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.181 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.978 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.889 kcal
(6) G-S(sol) free energy of system = (1) + (5) 6.203 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds