Wall clock time and date at job start Mon Mar 30 2020 03:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47441 * 2 1 4 4 C 1.50700 * 109.47304 * 239.99709 * 2 1 3 5 5 H 1.07997 * 120.00434 * 241.34505 * 4 2 1 6 6 C 1.37883 * 119.99889 * 61.34735 * 4 2 1 7 7 N 1.31517 * 120.00045 * 193.97601 * 6 4 2 8 8 Si 1.86797 * 119.99709 * 13.98058 * 6 4 2 9 9 H 1.48499 * 109.47543 * 84.54937 * 8 6 4 10 10 H 1.48501 * 109.47187 * 204.54753 * 8 6 4 11 11 H 1.48500 * 109.47515 * 324.54343 * 8 6 4 12 12 C 1.53005 * 109.47113 * 119.99860 * 2 1 3 13 13 N 1.46500 * 109.47013 * 299.99922 * 12 2 1 14 14 C 1.34768 * 119.99888 * 179.97438 * 13 12 2 15 15 O 1.21289 * 120.00368 * 0.02562 * 14 13 12 16 16 C 1.50704 * 120.00284 * 180.02562 * 14 13 12 17 17 H 1.08997 * 112.78691 * 48.69353 * 16 14 13 18 18 C 1.53510 * 113.47059 * 277.88540 * 16 14 13 19 19 C 1.53507 * 83.57768 * 271.25461 * 18 16 14 20 20 N 1.47472 * 113.47840 * 179.50680 * 16 14 13 21 21 H 1.09000 * 109.46818 * 309.36950 * 1 2 3 22 22 H 1.09004 * 109.46621 * 69.36440 * 1 2 3 23 23 H 1.08997 * 109.46874 * 189.36826 * 1 2 3 24 24 H 1.09001 * 109.47239 * 180.02562 * 3 2 1 25 25 H 1.08999 * 109.47123 * 299.99960 * 3 2 1 26 26 H 1.08994 * 109.47281 * 59.99819 * 3 2 1 27 27 H 0.97001 * 119.99703 * 179.97438 * 7 6 4 28 28 H 1.09001 * 109.47131 * 179.97438 * 12 2 1 29 29 H 1.09002 * 109.46850 * 60.00150 * 12 2 1 30 30 H 0.97000 * 120.00233 * 0.02562 * 13 12 2 31 31 H 1.09007 * 114.16874 * 157.60571 * 18 16 14 32 32 H 1.09005 * 114.35007 * 24.91649 * 18 16 14 33 33 H 1.09000 * 113.48114 * 219.21472 * 19 18 16 34 34 H 1.08993 * 113.47810 * 88.74604 * 19 18 16 35 35 H 1.00898 * 111.00155 * 336.05789 * 20 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6352 -1.6010 -1.1315 6 6 1.7224 -0.2234 -2.4826 7 7 1.9158 -0.9727 -3.5460 8 14 1.0277 1.5006 -2.6684 9 1 2.1418 2.4816 -2.7084 10 1 0.2471 1.5865 -3.9288 11 1 0.1418 1.8043 -1.5160 12 6 2.0400 -0.7212 1.2493 13 7 1.5517 -0.0306 2.4454 14 6 1.8768 -0.4913 3.6695 15 8 2.5741 -1.4774 3.7809 16 6 1.3741 0.2188 4.9000 17 1 0.3043 0.4242 4.8614 18 6 2.2179 1.4410 5.2883 19 6 3.0263 0.4122 6.0910 20 7 1.8059 -0.4130 6.1606 21 1 -0.3633 0.6519 0.7945 22 1 -0.3633 0.3622 -0.9618 23 1 -0.3633 -1.0139 0.1673 24 1 3.1301 1.4424 -0.0005 25 1 1.6768 1.9563 -0.8900 26 1 1.6768 1.9563 0.8899 27 1 1.6974 -0.6301 -4.4268 28 1 3.1300 -0.7216 1.2491 29 1 1.6767 -1.7489 1.2493 30 1 0.9937 0.7579 2.3564 31 1 1.6900 2.1710 5.9020 32 1 2.7653 1.8907 4.4599 33 1 3.3568 0.7814 7.0619 34 1 3.8308 -0.0499 5.5190 35 1 2.0208 -1.3889 6.0209 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000315450457.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:37 Heat of formation + Delta-G solvation = 6.203213 kcal Electronic energy + Delta-G solvation = -16208.349547 eV Core-core repulsion = 13628.934900 eV Total energy + Delta-G solvation = -2579.414648 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.76867 -38.09760 -36.52858 -33.44338 -31.56739 -27.94787 -27.34485 -26.44707 -25.48632 -24.68224 -21.58259 -19.57170 -19.02072 -17.62671 -16.47033 -16.13962 -15.67264 -15.14861 -14.84666 -14.44193 -13.67267 -13.30563 -13.05030 -12.88901 -12.63430 -12.28044 -12.09703 -12.07483 -11.42892 -11.36219 -10.82558 -10.50184 -10.39259 -10.22702 -10.12745 -10.08339 -9.23662 -9.01075 -8.73233 -8.66146 -8.50097 -6.19125 -4.16858 2.68648 3.20113 3.26958 3.35230 3.43194 4.08259 4.30776 4.31210 4.79018 4.95497 5.11378 5.23937 5.36691 5.59067 5.61716 5.69459 5.77567 5.90990 5.98186 5.99082 6.29361 6.39920 6.45459 6.55982 6.62495 6.67606 6.88504 7.03948 7.15169 7.36603 7.66510 7.77932 8.36152 8.43768 8.85868 9.44419 10.93931 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.053202 B = 0.006586 C = 0.006262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.165892 B = 4250.417512 C = 4470.012415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.029 3.971 3 C -0.148 4.148 4 C -0.515 4.515 5 H 0.076 0.924 6 C 0.076 3.924 7 N -0.890 5.890 8 Si 0.885 3.115 9 H -0.286 1.286 10 H -0.305 1.305 11 H -0.249 1.249 12 C 0.140 3.860 13 N -0.712 5.712 14 C 0.499 3.501 15 O -0.549 6.549 16 C 0.004 3.996 17 H 0.115 0.885 18 C -0.131 4.131 19 C -0.002 4.002 20 N -0.607 5.607 21 H 0.022 0.978 22 H 0.057 0.943 23 H 0.047 0.953 24 H 0.053 0.947 25 H 0.042 0.958 26 H 0.029 0.971 27 H 0.265 0.735 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.399 0.601 31 H 0.101 0.899 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.073 0.927 35 H 0.334 0.666 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.903 6.867 14.186 15.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.027 3.973 3 C -0.205 4.205 4 C -0.553 4.553 5 H 0.094 0.906 6 C -0.127 4.127 7 N -0.527 5.527 8 Si 0.718 3.282 9 H -0.213 1.213 10 H -0.233 1.233 11 H -0.175 1.175 12 C 0.018 3.982 13 N -0.362 5.362 14 C 0.282 3.718 15 O -0.428 6.428 16 C -0.111 4.111 17 H 0.133 0.867 18 C -0.169 4.169 19 C -0.132 4.132 20 N -0.234 5.234 21 H 0.041 0.959 22 H 0.076 0.924 23 H 0.066 0.934 24 H 0.072 0.928 25 H 0.060 0.940 26 H 0.048 0.952 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.234 0.766 31 H 0.119 0.881 32 H 0.098 0.902 33 H 0.103 0.897 34 H 0.091 0.909 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -1.912 6.390 14.705 16.147 hybrid contribution -0.031 0.899 -1.170 1.476 sum -1.943 7.290 13.534 15.495 Atomic orbital electron populations 1.22304 0.97792 0.99874 1.00044 1.18722 0.92554 0.92269 0.93720 1.22363 1.01195 0.98287 0.98638 1.20705 1.34207 1.12373 0.87985 0.90569 1.24977 0.94635 0.97324 0.95771 1.69951 1.48025 1.35922 0.98756 0.87290 0.79347 0.85497 0.76059 1.21333 1.23326 1.17514 1.21564 0.98642 0.95900 0.82103 1.46267 1.52311 1.31602 1.06023 1.20772 0.80784 0.84919 0.85318 1.90691 1.38679 1.26747 1.86686 1.23100 1.02402 0.96242 0.89338 0.86724 1.23127 0.97783 0.95559 1.00414 1.23567 0.93964 0.94752 1.00936 1.67521 1.19979 1.09410 1.26477 0.95906 0.92446 0.93380 0.92788 0.93964 0.95156 0.92501 0.91918 0.91775 0.76627 0.88095 0.90197 0.89689 0.90900 0.85024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 7.53 37.16 0.28 -2.56 16 2 C 0.03 0.61 0.50 -155.66 -0.08 0.53 16 3 C -0.15 -2.90 7.52 37.16 0.28 -2.62 16 4 C -0.51 -13.64 8.62 -34.44 -0.30 -13.94 16 5 H 0.08 2.23 7.99 -52.49 -0.42 1.81 16 6 C 0.08 2.08 5.32 -17.82 -0.09 1.99 16 7 N -0.89 -26.37 13.96 55.43 0.77 -25.60 16 8 Si 0.89 20.76 22.79 -169.99 -3.87 16.89 16 9 H -0.29 -6.67 7.10 56.52 0.40 -6.27 16 10 H -0.30 -7.33 7.11 56.52 0.40 -6.93 16 11 H -0.25 -5.28 4.65 56.52 0.26 -5.02 16 12 C 0.14 2.74 4.49 -4.04 -0.02 2.72 16 13 N -0.71 -11.13 5.00 -60.29 -0.30 -11.43 16 14 C 0.50 7.75 6.98 -10.99 -0.08 7.67 16 15 O -0.55 -10.51 15.37 5.55 0.09 -10.42 16 16 C 0.00 0.05 4.84 -72.59 -0.35 -0.30 16 17 H 0.11 1.20 8.14 -51.93 -0.42 0.77 16 18 C -0.13 -1.30 8.05 -26.20 -0.21 -1.51 16 19 C 0.00 -0.02 8.18 -7.55 -0.06 -0.08 16 20 N -0.61 -7.53 8.64 -116.72 -1.01 -8.54 16 21 H 0.02 0.37 7.13 -51.93 -0.37 0.00 16 22 H 0.06 1.22 4.30 -51.93 -0.22 1.00 16 23 H 0.05 0.95 8.12 -51.93 -0.42 0.53 16 24 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 25 H 0.04 0.88 2.25 -51.93 -0.12 0.77 16 26 H 0.03 0.48 6.86 -51.93 -0.36 0.13 16 27 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 28 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 29 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 30 H 0.40 5.36 6.26 -40.82 -0.26 5.11 16 31 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.08 0.78 8.11 -51.93 -0.42 0.36 16 33 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.91 7.65 -51.93 -0.40 0.51 16 35 H 0.33 4.52 7.72 -39.29 -0.30 4.22 16 LS Contribution 270.20 15.07 4.07 4.07 Total: -1.00 -29.91 270.20 -5.98 -35.89 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -5.09 Total: 7.25 kcal Atomic # 6 Polarization: -7.47 SS G_CDS: -0.63 Total: -8.10 kcal Atomic # 7 Polarization: -45.04 SS G_CDS: -0.54 Total: -45.57 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.09 Total: -10.42 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -3.87 Total: 16.89 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -29.91 -5.98 -35.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315450457.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.092 kcal (2) G-P(sol) polarization free energy of solvation -29.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds