Wall clock time and date at job start Mon Mar 30 2020 03:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47441 * 2 1 4 4 C 1.50700 * 109.47304 * 239.99709 * 2 1 3 5 5 H 1.07997 * 120.00434 * 241.34505 * 4 2 1 6 6 C 1.37883 * 119.99889 * 61.34735 * 4 2 1 7 7 N 1.31517 * 120.00045 * 193.97601 * 6 4 2 8 8 Si 1.86797 * 119.99709 * 13.98058 * 6 4 2 9 9 H 1.48499 * 109.47543 * 84.54937 * 8 6 4 10 10 H 1.48501 * 109.47187 * 204.54753 * 8 6 4 11 11 H 1.48500 * 109.47515 * 324.54343 * 8 6 4 12 12 C 1.53005 * 109.47113 * 119.99860 * 2 1 3 13 13 N 1.46500 * 109.47013 * 299.99922 * 12 2 1 14 14 C 1.34768 * 119.99888 * 179.97438 * 13 12 2 15 15 O 1.21289 * 120.00368 * 0.02562 * 14 13 12 16 16 C 1.50704 * 120.00284 * 180.02562 * 14 13 12 17 17 H 1.08997 * 112.78691 * 48.69353 * 16 14 13 18 18 C 1.53510 * 113.47059 * 277.88540 * 16 14 13 19 19 C 1.53507 * 83.57768 * 271.25461 * 18 16 14 20 20 N 1.47472 * 113.47840 * 179.50680 * 16 14 13 21 21 H 1.09000 * 109.46818 * 309.36950 * 1 2 3 22 22 H 1.09004 * 109.46621 * 69.36440 * 1 2 3 23 23 H 1.08997 * 109.46874 * 189.36826 * 1 2 3 24 24 H 1.09001 * 109.47239 * 180.02562 * 3 2 1 25 25 H 1.08999 * 109.47123 * 299.99960 * 3 2 1 26 26 H 1.08994 * 109.47281 * 59.99819 * 3 2 1 27 27 H 0.97001 * 119.99703 * 179.97438 * 7 6 4 28 28 H 1.09001 * 109.47131 * 179.97438 * 12 2 1 29 29 H 1.09002 * 109.46850 * 60.00150 * 12 2 1 30 30 H 0.97000 * 120.00233 * 0.02562 * 13 12 2 31 31 H 1.09007 * 114.16874 * 157.60571 * 18 16 14 32 32 H 1.09005 * 114.35007 * 24.91649 * 18 16 14 33 33 H 1.09000 * 113.48114 * 219.21472 * 19 18 16 34 34 H 1.08993 * 113.47810 * 88.74604 * 19 18 16 35 35 H 1.00898 * 111.00155 * 336.05789 * 20 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6352 -1.6010 -1.1315 6 6 1.7224 -0.2234 -2.4826 7 7 1.9158 -0.9727 -3.5460 8 14 1.0277 1.5006 -2.6684 9 1 2.1418 2.4816 -2.7084 10 1 0.2471 1.5865 -3.9288 11 1 0.1418 1.8043 -1.5160 12 6 2.0400 -0.7212 1.2493 13 7 1.5517 -0.0306 2.4454 14 6 1.8768 -0.4913 3.6695 15 8 2.5741 -1.4774 3.7809 16 6 1.3741 0.2188 4.9000 17 1 0.3043 0.4242 4.8614 18 6 2.2179 1.4410 5.2883 19 6 3.0263 0.4122 6.0910 20 7 1.8059 -0.4130 6.1606 21 1 -0.3633 0.6519 0.7945 22 1 -0.3633 0.3622 -0.9618 23 1 -0.3633 -1.0139 0.1673 24 1 3.1301 1.4424 -0.0005 25 1 1.6768 1.9563 -0.8900 26 1 1.6768 1.9563 0.8899 27 1 1.6974 -0.6301 -4.4268 28 1 3.1300 -0.7216 1.2491 29 1 1.6767 -1.7489 1.2493 30 1 0.9937 0.7579 2.3564 31 1 1.6900 2.1710 5.9020 32 1 2.7653 1.8907 4.4599 33 1 3.3568 0.7814 7.0619 34 1 3.8308 -0.0499 5.5190 35 1 2.0208 -1.3889 6.0209 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000315450457.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:37 Heat of formation + Delta-G solvation = -19.174802 kcal Electronic energy + Delta-G solvation = -16209.450021 eV Core-core repulsion = 13628.934900 eV Total energy + Delta-G solvation = -2580.515121 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.86574 -39.40498 -38.02453 -35.06761 -33.47615 -29.02883 -28.36480 -28.01530 -27.17965 -26.28776 -22.75715 -21.03783 -20.39214 -18.74249 -18.07857 -17.49338 -17.10101 -16.73847 -16.14895 -15.74638 -14.94617 -14.84927 -14.67394 -14.36589 -14.09180 -13.94219 -13.75530 -12.97595 -12.84545 -12.40666 -12.26548 -12.17376 -11.96304 -11.77676 -11.67441 -11.34290 -11.06539 -10.63081 -10.42230 -10.07529 -10.05296 -8.31234 -6.33468 1.36647 1.37764 1.47905 1.51343 2.17182 2.34345 3.05008 3.17022 3.44060 3.74336 4.04046 4.07830 4.29763 4.38109 4.40493 4.52453 4.74223 4.76698 4.80993 4.85113 4.87611 4.91390 4.92600 5.05412 5.14216 5.16531 5.39527 5.51194 5.70495 5.78586 6.02177 6.28315 6.54717 6.71225 7.18884 7.31654 8.86067 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.053202 B = 0.006586 C = 0.006262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.165892 B = 4250.417512 C = 4470.012415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.028 3.972 3 C -0.147 4.147 4 C -0.520 4.520 5 H 0.025 0.975 6 C 0.016 3.984 7 N -0.947 5.947 8 Si 0.946 3.054 9 H -0.281 1.281 10 H -0.316 1.316 11 H -0.201 1.201 12 C 0.156 3.844 13 N -0.699 5.699 14 C 0.498 3.502 15 O -0.591 6.591 16 C 0.007 3.993 17 H 0.141 0.859 18 C -0.114 4.114 19 C -0.008 4.008 20 N -0.611 5.611 21 H 0.069 0.931 22 H 0.045 0.955 23 H 0.039 0.961 24 H 0.046 0.954 25 H 0.035 0.965 26 H 0.077 0.923 27 H 0.265 0.735 28 H 0.042 0.958 29 H 0.038 0.962 30 H 0.415 0.585 31 H 0.129 0.871 32 H 0.084 0.916 33 H 0.103 0.897 34 H 0.051 0.949 35 H 0.324 0.676 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.610 10.176 16.540 19.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.026 3.974 3 C -0.204 4.204 4 C -0.559 4.559 5 H 0.043 0.957 6 C -0.182 4.182 7 N -0.586 5.586 8 Si 0.775 3.225 9 H -0.208 1.208 10 H -0.246 1.246 11 H -0.124 1.124 12 C 0.032 3.968 13 N -0.351 5.351 14 C 0.283 3.717 15 O -0.472 6.472 16 C -0.108 4.108 17 H 0.159 0.841 18 C -0.152 4.152 19 C -0.139 4.139 20 N -0.236 5.236 21 H 0.088 0.912 22 H 0.064 0.936 23 H 0.058 0.942 24 H 0.065 0.935 25 H 0.053 0.947 26 H 0.096 0.904 27 H 0.073 0.927 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.253 0.747 31 H 0.147 0.853 32 H 0.103 0.897 33 H 0.121 0.879 34 H 0.069 0.931 35 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -3.637 9.731 17.111 20.018 hybrid contribution 0.587 -0.283 -1.840 1.952 sum -3.050 9.449 15.271 18.215 Atomic orbital electron populations 1.22231 0.95970 1.00649 1.01071 1.18656 0.93849 0.93230 0.91623 1.22294 1.00987 0.96620 1.00496 1.21041 1.33017 1.11087 0.90708 0.95682 1.25899 0.95357 1.01775 0.95159 1.70121 1.50664 1.38394 0.99458 0.86317 0.79451 0.79671 0.77074 1.20841 1.24560 1.12448 1.21052 0.97330 0.94973 0.83438 1.45985 1.52461 1.31822 1.04841 1.21521 0.79678 0.84340 0.86118 1.90682 1.40478 1.28784 1.87281 1.23159 1.03957 0.96736 0.86910 0.84128 1.23193 0.96703 0.94868 1.00388 1.23636 0.93249 0.95001 1.02002 1.67574 1.20746 1.08921 1.26388 0.91214 0.93587 0.94215 0.93511 0.94660 0.90385 0.92663 0.93965 0.94306 0.74702 0.85272 0.89709 0.87894 0.93058 0.86115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.18 7.53 71.98 0.54 -4.64 16 2 C 0.03 1.13 0.50 -52.93 -0.03 1.11 16 3 C -0.15 -5.23 7.52 71.98 0.54 -4.69 16 4 C -0.52 -28.45 8.62 25.60 0.22 -28.23 16 5 H 0.02 1.57 7.99 -2.91 -0.02 1.54 16 6 C 0.02 0.87 5.32 84.66 0.45 1.32 16 7 N -0.95 -58.57 13.96 21.45 0.30 -58.27 16 8 Si 0.95 41.88 22.79 68.60 1.56 43.45 16 9 H -0.28 -12.18 7.10 99.48 0.71 -11.48 16 10 H -0.32 -14.52 7.11 99.48 0.71 -13.82 16 11 H -0.20 -7.37 4.65 99.48 0.46 -6.91 16 12 C 0.16 6.05 4.49 86.38 0.39 6.44 16 13 N -0.70 -19.95 5.00 -463.05 -2.32 -22.27 16 14 C 0.50 14.50 6.98 87.66 0.61 15.11 16 15 O -0.59 -22.61 15.37 -3.06 -0.05 -22.66 16 16 C 0.01 0.15 4.84 41.44 0.20 0.35 16 17 H 0.14 2.21 8.14 -2.39 -0.02 2.19 16 18 C -0.11 -1.76 8.05 30.94 0.25 -1.51 16 19 C -0.01 -0.17 8.18 83.57 0.68 0.52 16 20 N -0.61 -13.67 8.64 -523.18 -4.52 -18.19 16 21 H 0.07 1.89 7.13 -2.39 -0.02 1.88 16 22 H 0.05 1.78 4.30 -2.38 -0.01 1.77 16 23 H 0.04 1.49 8.12 -2.39 -0.02 1.47 16 24 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 25 H 0.04 1.32 2.25 -2.39 -0.01 1.31 16 26 H 0.08 2.03 6.86 -2.39 -0.02 2.01 16 27 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 28 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.41 9.03 6.26 -92.71 -0.58 8.45 16 31 H 0.13 1.36 8.14 -2.38 -0.02 1.34 16 32 H 0.08 1.28 8.11 -2.38 -0.02 1.26 16 33 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.05 1.23 7.65 -2.39 -0.02 1.21 16 35 H 0.32 8.45 7.72 -89.70 -0.69 7.76 16 Total: -1.00 -69.20 270.20 -1.57 -70.78 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: -0.41 Total: 21.37 kcal Atomic # 6 Polarization: -18.08 SS G_CDS: 3.86 Total: -14.21 kcal Atomic # 7 Polarization: -92.18 SS G_CDS: -6.54 Total: -98.72 kcal Atomic # 8 Polarization: -22.61 SS G_CDS: -0.05 Total: -22.66 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 1.56 Total: 43.45 kcal Total: -69.20 -1.57 -70.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315450457.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.603 kcal (2) G-P(sol) polarization free energy of solvation -69.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds