Wall clock time and date at job start Mon Mar 30 2020 03:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09008 * 115.55015 * 330.72583 * 3 2 1 5 5 C 1.52999 * 117.49930 * 116.38826 * 3 2 1 6 6 C 1.52998 * 117.50563 * 185.01522 * 3 2 1 7 7 H 1.09005 * 117.49444 * 359.97438 * 6 3 2 8 8 C 1.52995 * 117.50174 * 145.02237 * 6 3 2 9 9 N 1.46908 * 109.46835 * 185.00376 * 8 6 3 10 10 C 1.46904 * 110.99525 * 180.02562 * 9 8 6 11 11 C 1.50705 * 109.46675 * 179.97438 * 10 9 8 12 12 O 1.21287 * 119.99871 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99731 * 179.97438 * 11 10 9 14 14 C 1.37096 * 120.00088 * 179.97438 * 13 11 10 15 15 H 1.08005 * 119.99840 * 0.02562 * 14 13 11 16 16 C 1.38949 * 120.00238 * 179.97438 * 14 13 11 17 17 N 1.31411 * 119.99873 * 180.02562 * 16 14 13 18 18 Si 1.86801 * 119.99834 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.47370 * 89.99738 * 18 16 14 20 20 H 1.48506 * 109.46776 * 209.99735 * 18 16 14 21 21 H 1.48501 * 109.47171 * 329.99574 * 18 16 14 22 22 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 23 23 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 25 25 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 26 26 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 27 27 H 1.09001 * 117.50106 * 214.97956 * 5 3 2 28 28 H 1.09000 * 117.49781 * 359.97438 * 5 3 2 29 29 H 1.09005 * 109.47206 * 304.99757 * 8 6 3 30 30 H 1.08998 * 109.47399 * 65.00563 * 8 6 3 31 31 H 1.00899 * 110.99596 * 303.94548 * 9 8 6 32 32 H 1.08998 * 109.46834 * 299.99306 * 10 9 8 33 33 H 1.08999 * 109.47090 * 59.99840 * 10 9 8 34 34 H 0.97005 * 119.99932 * 0.02562 * 13 11 10 35 35 H 0.97007 * 119.99458 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3879 2.1717 -0.4809 5 6 2.8442 1.9074 1.2157 6 6 3.5501 1.6580 -0.1186 7 1 4.1803 0.7720 -0.1963 8 6 4.0297 2.8806 -0.9035 9 7 5.4948 2.8513 -1.0082 10 6 5.9923 4.0132 -1.7569 11 6 7.4955 3.9491 -1.8428 12 8 8.0934 3.0262 -1.3312 13 7 8.1754 4.9169 -2.4891 14 6 9.5429 4.8590 -2.5669 15 1 10.0754 4.0376 -2.1107 16 6 10.2437 5.8565 -3.2337 17 7 11.5545 5.8006 -3.3086 18 14 9.3226 7.2768 -4.0234 19 1 9.1777 8.3804 -3.0405 20 1 10.0804 7.7624 -5.2047 21 1 7.9777 6.8167 -4.4530 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 2.7216 2.9426 1.5343 28 1 3.0095 1.1858 2.0157 29 1 3.5938 2.8650 -1.9024 30 1 3.7206 3.7887 -0.3861 31 1 5.9215 2.8000 -0.0953 32 1 5.5699 4.0059 -2.7616 33 1 5.6967 4.9290 -1.2450 34 1 7.6971 5.6549 -2.8986 35 1 12.0437 6.4968 -3.7744 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395812435.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:54 Heat of formation + Delta-G solvation = -21.865446 kcal Electronic energy + Delta-G solvation = -14901.910825 eV Core-core repulsion = 12321.279029 eV Total energy + Delta-G solvation = -2580.631796 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.72122 -38.14783 -35.07695 -33.84381 -32.19177 -31.62740 -28.10401 -25.17127 -23.97016 -23.14224 -20.79241 -20.48724 -19.32155 -18.29358 -16.35033 -15.60107 -15.14029 -14.98957 -14.78244 -14.33053 -13.65595 -13.53790 -13.44673 -12.97275 -12.60500 -12.29474 -12.19003 -11.98709 -11.68790 -11.47694 -11.33523 -11.16427 -11.08506 -10.58135 -10.01924 -9.95823 -9.82868 -9.55431 -8.56215 -8.17412 -8.09469 -6.29390 -3.80690 3.04254 3.07921 3.16107 3.61191 3.76835 4.07919 4.12291 4.57316 4.72672 4.80105 4.97759 4.99197 5.14138 5.21691 5.26366 5.39111 5.53587 5.56387 5.63888 5.70221 5.76716 5.82807 5.84874 5.88047 5.92906 5.96520 6.13360 6.28520 7.16332 7.60281 7.64335 8.16594 8.62018 8.96938 9.44455 9.85190 10.83836 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.067163 B = 0.004005 C = 0.003880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 416.794289 B = 6988.861882 C = 7215.542646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.094 4.094 3 C -0.148 4.148 4 H 0.102 0.898 5 C -0.180 4.180 6 C -0.143 4.143 7 H 0.115 0.885 8 C 0.090 3.910 9 N -0.667 5.667 10 C 0.048 3.952 11 C 0.451 3.549 12 O -0.564 6.564 13 N -0.591 5.591 14 C -0.305 4.305 15 H 0.120 0.880 16 C 0.041 3.959 17 N -0.882 5.882 18 Si 0.880 3.120 19 H -0.271 1.271 20 H -0.277 1.277 21 H -0.269 1.269 22 H 0.053 0.947 23 H 0.053 0.947 24 H 0.053 0.947 25 H 0.062 0.938 26 H 0.066 0.934 27 H 0.090 0.910 28 H 0.093 0.907 29 H 0.073 0.927 30 H 0.027 0.973 31 H 0.352 0.648 32 H 0.087 0.913 33 H 0.044 0.956 34 H 0.370 0.630 35 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.837 -3.912 4.762 21.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.132 4.132 3 C -0.167 4.167 4 H 0.120 0.880 5 C -0.217 4.217 6 C -0.161 4.161 7 H 0.133 0.867 8 C -0.039 4.039 9 N -0.300 5.300 10 C -0.085 4.085 11 C 0.236 3.764 12 O -0.446 6.446 13 N -0.231 5.231 14 C -0.433 4.433 15 H 0.137 0.863 16 C -0.162 4.162 17 N -0.522 5.522 18 Si 0.707 3.293 19 H -0.197 1.197 20 H -0.202 1.202 21 H -0.195 1.195 22 H 0.072 0.928 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.081 0.919 26 H 0.085 0.915 27 H 0.109 0.891 28 H 0.111 0.889 29 H 0.092 0.908 30 H 0.045 0.955 31 H 0.171 0.829 32 H 0.105 0.895 33 H 0.062 0.938 34 H 0.203 0.797 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -20.205 -4.857 4.487 21.260 hybrid contribution -0.670 2.022 -0.090 2.132 sum -20.875 -2.836 4.397 21.521 Atomic orbital electron populations 1.21746 0.95665 1.01433 1.01776 1.21117 0.95714 0.94254 1.02103 1.22440 0.93672 0.97957 1.02598 0.88020 1.23234 1.04669 1.02071 0.91734 1.22435 0.94292 1.00724 0.98658 0.86740 1.21523 0.88618 0.94453 0.99349 1.60057 1.04146 1.41839 1.23942 1.21707 0.95081 0.92007 0.99724 1.19722 0.88122 0.84468 0.84070 1.90562 1.69774 1.34615 1.49626 1.42209 1.07800 1.22719 1.50379 1.19441 0.79541 1.10666 1.33694 0.86287 1.25040 0.95497 0.98014 0.97657 1.69627 1.05660 1.34472 1.42470 0.86663 0.79751 0.82931 0.79997 1.19679 1.20174 1.19459 0.92763 0.92833 0.92738 0.91914 0.91502 0.89129 0.88899 0.90849 0.95523 0.82906 0.89494 0.93843 0.79689 0.91635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.87 37.16 0.37 -0.69 16 2 C -0.09 -0.79 6.22 -26.73 -0.17 -0.96 16 3 C -0.15 -1.38 5.46 -90.62 -0.49 -1.87 16 4 H 0.10 0.90 8.07 -51.92 -0.42 0.48 16 5 C -0.18 -1.74 9.82 -26.73 -0.26 -2.00 16 6 C -0.14 -1.60 5.67 -90.62 -0.51 -2.11 16 7 H 0.11 1.43 8.14 -51.93 -0.42 1.00 16 8 C 0.09 1.12 5.97 -3.82 -0.02 1.10 16 9 N -0.67 -10.84 6.13 -115.05 -0.70 -11.54 16 10 C 0.05 0.82 6.17 -4.97 -0.03 0.79 16 11 C 0.45 10.49 7.82 -10.98 -0.09 10.40 16 12 O -0.56 -15.52 15.78 5.55 0.09 -15.43 16 13 N -0.59 -14.36 5.09 -10.96 -0.06 -14.41 16 14 C -0.30 -8.75 10.16 -14.93 -0.15 -8.91 16 15 H 0.12 3.90 7.39 -52.48 -0.39 3.52 16 16 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 17 N -0.88 -26.04 13.96 55.50 0.77 -25.26 16 18 Si 0.88 19.55 27.74 -169.99 -4.71 14.83 16 19 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 20 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 21 H -0.27 -5.46 6.52 56.52 0.37 -5.09 16 22 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 23 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 24 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 25 H 0.06 0.51 7.87 -51.93 -0.41 0.11 16 26 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.09 0.84 8.03 -51.93 -0.42 0.43 16 28 H 0.09 0.85 8.03 -51.93 -0.42 0.43 16 29 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.03 0.31 7.87 -51.93 -0.41 -0.10 16 31 H 0.35 5.92 8.43 -39.29 -0.33 5.59 16 32 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 33 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.37 7.87 5.76 -40.82 -0.24 7.63 16 35 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 296.98 15.07 4.48 4.48 Total: -1.00 -31.95 296.98 -7.17 -39.12 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: -5.58 Total: 11.44 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: -1.46 Total: -3.22 kcal Atomic # 7 Polarization: -51.23 SS G_CDS: 0.01 Total: -51.22 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: 0.09 Total: -15.43 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -4.71 Total: 14.83 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -31.95 -7.17 -39.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395812435.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.258 kcal (2) G-P(sol) polarization free energy of solvation -31.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds