Wall clock time and date at job start Mon Mar 30 2020 03:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09008 * 115.55015 * 330.72583 * 3 2 1 5 5 C 1.52999 * 117.49930 * 116.38826 * 3 2 1 6 6 C 1.52998 * 117.50563 * 185.01522 * 3 2 1 7 7 H 1.09005 * 117.49444 * 359.97438 * 6 3 2 8 8 C 1.52995 * 117.50174 * 145.02237 * 6 3 2 9 9 N 1.46908 * 109.46835 * 185.00376 * 8 6 3 10 10 C 1.46904 * 110.99525 * 180.02562 * 9 8 6 11 11 C 1.50705 * 109.46675 * 179.97438 * 10 9 8 12 12 O 1.21287 * 119.99871 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99731 * 179.97438 * 11 10 9 14 14 C 1.37096 * 120.00088 * 179.97438 * 13 11 10 15 15 H 1.08005 * 119.99840 * 0.02562 * 14 13 11 16 16 C 1.38949 * 120.00238 * 179.97438 * 14 13 11 17 17 N 1.31411 * 119.99873 * 180.02562 * 16 14 13 18 18 Si 1.86801 * 119.99834 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.47370 * 89.99738 * 18 16 14 20 20 H 1.48506 * 109.46776 * 209.99735 * 18 16 14 21 21 H 1.48501 * 109.47171 * 329.99574 * 18 16 14 22 22 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 23 23 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 25 25 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 26 26 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 27 27 H 1.09001 * 117.50106 * 214.97956 * 5 3 2 28 28 H 1.09000 * 117.49781 * 359.97438 * 5 3 2 29 29 H 1.09005 * 109.47206 * 304.99757 * 8 6 3 30 30 H 1.08998 * 109.47399 * 65.00563 * 8 6 3 31 31 H 1.00899 * 110.99596 * 303.94548 * 9 8 6 32 32 H 1.08998 * 109.46834 * 299.99306 * 10 9 8 33 33 H 1.08999 * 109.47090 * 59.99840 * 10 9 8 34 34 H 0.97005 * 119.99932 * 0.02562 * 13 11 10 35 35 H 0.97007 * 119.99458 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3879 2.1717 -0.4809 5 6 2.8442 1.9074 1.2157 6 6 3.5501 1.6580 -0.1186 7 1 4.1803 0.7720 -0.1963 8 6 4.0297 2.8806 -0.9035 9 7 5.4948 2.8513 -1.0082 10 6 5.9923 4.0132 -1.7569 11 6 7.4955 3.9491 -1.8428 12 8 8.0934 3.0262 -1.3312 13 7 8.1754 4.9169 -2.4891 14 6 9.5429 4.8590 -2.5669 15 1 10.0754 4.0376 -2.1107 16 6 10.2437 5.8565 -3.2337 17 7 11.5545 5.8006 -3.3086 18 14 9.3226 7.2768 -4.0234 19 1 9.1777 8.3804 -3.0405 20 1 10.0804 7.7624 -5.2047 21 1 7.9777 6.8167 -4.4530 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 2.7216 2.9426 1.5343 28 1 3.0095 1.1858 2.0157 29 1 3.5938 2.8650 -1.9024 30 1 3.7206 3.7887 -0.3861 31 1 5.9215 2.8000 -0.0953 32 1 5.5699 4.0059 -2.7616 33 1 5.6967 4.9290 -1.2450 34 1 7.6971 5.6549 -2.8986 35 1 12.0437 6.4968 -3.7744 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395812435.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:53 Heat of formation + Delta-G solvation = -45.334768 kcal Electronic energy + Delta-G solvation = -14902.928531 eV Core-core repulsion = 12321.279029 eV Total energy + Delta-G solvation = -2581.649502 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.34502 -39.22632 -36.43471 -35.74287 -33.76146 -32.90676 -29.46982 -26.82724 -24.76818 -24.47377 -21.68521 -21.38249 -21.12474 -20.21191 -17.88885 -17.18376 -16.66557 -16.02594 -15.96491 -15.47356 -15.07769 -14.81765 -14.72228 -14.54750 -14.00437 -13.74754 -13.28905 -13.04339 -12.89274 -12.79203 -12.42165 -12.21971 -12.08402 -11.98036 -11.82293 -11.52297 -10.78788 -10.65409 -10.42341 -10.26103 -9.33500 -8.42049 -6.03330 1.30542 1.35600 1.44998 1.94132 2.22968 2.64860 2.91590 3.14282 3.37483 3.79685 3.98009 4.07729 4.16575 4.33001 4.38498 4.43825 4.48460 4.53411 4.63167 4.78725 4.85865 4.89153 5.00623 5.19075 5.25267 5.29307 5.35948 5.52070 5.54665 5.90199 6.06851 6.38009 6.59045 6.86843 7.38427 7.95088 8.75711 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.067163 B = 0.004005 C = 0.003880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 416.794289 B = 6988.861882 C = 7215.542646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.097 4.097 3 C -0.134 4.134 4 H 0.112 0.888 5 C -0.176 4.176 6 C -0.160 4.160 7 H 0.095 0.905 8 C 0.095 3.905 9 N -0.688 5.688 10 C 0.062 3.938 11 C 0.447 3.553 12 O -0.616 6.616 13 N -0.590 5.590 14 C -0.331 4.331 15 H 0.054 0.946 16 C -0.016 4.016 17 N -0.935 5.935 18 Si 0.967 3.033 19 H -0.256 1.256 20 H -0.275 1.275 21 H -0.231 1.231 22 H 0.057 0.943 23 H 0.059 0.941 24 H 0.057 0.943 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.098 0.902 28 H 0.095 0.905 29 H 0.081 0.919 30 H 0.043 0.957 31 H 0.344 0.656 32 H 0.114 0.886 33 H 0.078 0.922 34 H 0.390 0.610 35 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.287 -2.051 4.065 24.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.134 4.134 3 C -0.153 4.153 4 H 0.130 0.870 5 C -0.212 4.212 6 C -0.179 4.179 7 H 0.113 0.887 8 C -0.033 4.033 9 N -0.320 5.320 10 C -0.071 4.071 11 C 0.235 3.765 12 O -0.500 6.500 13 N -0.232 5.232 14 C -0.460 4.460 15 H 0.072 0.928 16 C -0.214 4.214 17 N -0.575 5.575 18 Si 0.787 3.213 19 H -0.180 1.180 20 H -0.200 1.200 21 H -0.154 1.154 22 H 0.076 0.924 23 H 0.078 0.922 24 H 0.076 0.924 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.117 0.883 28 H 0.113 0.887 29 H 0.099 0.901 30 H 0.061 0.939 31 H 0.162 0.838 32 H 0.132 0.868 33 H 0.096 0.904 34 H 0.226 0.774 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -23.696 -3.004 3.791 24.184 hybrid contribution 0.458 1.307 0.204 1.400 sum -23.237 -1.697 3.996 23.639 Atomic orbital electron populations 1.21725 0.94480 1.02028 1.02111 1.21148 0.96736 0.93699 1.01851 1.22516 0.92293 0.98645 1.01825 0.86991 1.23294 1.03893 1.02653 0.91404 1.22318 0.95484 0.99836 1.00262 0.88705 1.21560 0.86004 0.95538 1.00218 1.60068 1.06508 1.41852 1.23615 1.21635 0.89607 0.93905 1.01907 1.21005 0.90902 0.82845 0.81731 1.90540 1.71735 1.36528 1.51206 1.42025 1.06099 1.23905 1.51143 1.19020 0.81831 1.09981 1.35181 0.92772 1.26148 0.96433 1.01347 0.97494 1.69811 1.08171 1.36130 1.43401 0.85338 0.79608 0.77716 0.78686 1.18035 1.19970 1.15417 0.92414 0.92194 0.92380 0.92024 0.92007 0.88344 0.88675 0.90091 0.93892 0.83778 0.86833 0.90428 0.77383 0.91093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.87 71.98 0.71 -1.05 16 2 C -0.10 -1.46 6.22 30.59 0.19 -1.27 16 3 C -0.13 -2.20 5.46 -10.79 -0.06 -2.26 16 4 H 0.11 1.63 8.07 -2.38 -0.02 1.62 16 5 C -0.18 -3.05 9.82 30.59 0.30 -2.75 16 6 C -0.16 -3.37 5.67 -10.80 -0.06 -3.43 16 7 H 0.09 2.37 8.14 -2.38 -0.02 2.35 16 8 C 0.10 2.13 5.97 86.30 0.51 2.64 16 9 N -0.69 -21.32 6.13 -517.90 -3.17 -24.49 16 10 C 0.06 1.94 6.17 85.56 0.53 2.47 16 11 C 0.45 20.73 7.82 87.66 0.69 21.42 16 12 O -0.62 -35.15 15.78 -3.05 -0.05 -35.20 16 13 N -0.59 -28.30 5.09 -306.98 -1.56 -29.87 16 14 C -0.33 -19.70 10.16 84.04 0.85 -18.85 16 15 H 0.05 3.84 7.39 -2.91 -0.02 3.82 16 16 C -0.02 -0.88 5.50 84.93 0.47 -0.41 16 17 N -0.93 -56.88 13.96 21.66 0.30 -56.58 16 18 Si 0.97 38.94 27.74 68.60 1.90 40.84 16 19 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 20 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 21 H -0.23 -7.82 6.52 99.48 0.65 -7.17 16 22 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 23 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 24 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 25 H 0.06 0.94 7.87 -2.39 -0.02 0.92 16 26 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.10 1.57 8.03 -2.39 -0.02 1.55 16 28 H 0.09 1.60 8.03 -2.39 -0.02 1.58 16 29 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 30 H 0.04 0.84 7.87 -2.39 -0.02 0.82 16 31 H 0.34 11.45 8.43 -89.69 -0.76 10.70 16 32 H 0.11 3.03 8.14 -2.39 -0.02 3.01 16 33 H 0.08 1.97 8.14 -2.39 -0.02 1.96 16 34 H 0.39 15.38 5.76 -92.70 -0.53 14.85 16 35 H 0.28 15.50 8.31 -92.70 -0.77 14.73 16 Total: -1.00 -74.09 296.98 1.28 -72.81 By element: Atomic # 1 Polarization: 36.25 SS G_CDS: -0.27 Total: 35.98 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: 4.13 Total: -3.49 kcal Atomic # 7 Polarization: -106.50 SS G_CDS: -4.43 Total: -110.94 kcal Atomic # 8 Polarization: -35.15 SS G_CDS: -0.05 Total: -35.20 kcal Atomic # 14 Polarization: 38.94 SS G_CDS: 1.90 Total: 40.84 kcal Total: -74.09 1.28 -72.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395812435.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.471 kcal (2) G-P(sol) polarization free energy of solvation -74.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds