Wall clock time and date at job start Mon Mar 30 2020 03:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.46956 * 2 1 4 4 C 1.53009 * 115.55108 * 325.67225 * 3 2 1 5 5 C 1.52993 * 117.52069 * 111.36968 * 3 2 1 6 6 C 1.52999 * 117.50328 * 180.02562 * 3 2 1 7 7 H 1.09001 * 117.49518 * 359.97438 * 6 3 2 8 8 N 1.46896 * 117.50409 * 144.99385 * 6 3 2 9 9 C 1.46899 * 111.00338 * 204.99864 * 8 6 3 10 10 C 1.50698 * 109.46987 * 179.97438 * 9 8 6 11 11 O 1.21293 * 120.00006 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99538 * 179.97438 * 10 9 8 13 13 C 1.37104 * 119.99773 * 179.72591 * 12 10 9 14 14 H 1.08002 * 119.99671 * 0.27660 * 13 12 10 15 15 C 1.38950 * 120.00030 * 180.27703 * 13 12 10 16 16 N 1.31414 * 119.99926 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 119.99969 * 180.02562 * 15 13 12 18 18 H 1.48505 * 109.47234 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47403 * 120.00325 * 17 15 13 20 20 H 1.48503 * 109.47163 * 240.00122 * 17 15 13 21 21 H 1.09007 * 109.47292 * 299.99657 * 1 2 3 22 22 H 1.08994 * 109.47577 * 60.00112 * 1 2 3 23 23 H 1.09001 * 109.47022 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47614 * 240.00303 * 2 1 3 25 25 H 1.08994 * 109.47577 * 119.99888 * 2 1 3 26 26 H 1.09001 * 109.46624 * 274.33353 * 4 3 2 27 27 H 1.09007 * 109.46667 * 34.32798 * 4 3 2 28 28 H 1.08996 * 109.47168 * 154.32725 * 4 3 2 29 29 H 1.09004 * 117.49767 * 359.97438 * 5 3 2 30 30 H 1.08996 * 117.50388 * 214.96886 * 5 3 2 31 31 H 1.00898 * 110.99977 * 328.96106 * 8 6 3 32 32 H 1.09003 * 109.46477 * 60.00383 * 9 8 6 33 33 H 1.08993 * 109.47002 * 300.00709 * 9 8 6 34 34 H 0.97001 * 120.00485 * 0.02562 * 12 10 9 35 35 H 0.96999 * 119.99863 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.1851 2.4447 -0.7785 5 6 2.7417 1.9443 1.2635 6 6 3.5549 1.6564 -0.0006 7 1 4.1883 0.7693 -0.0006 8 7 4.0772 2.8080 -0.7481 9 6 5.4681 2.5802 -1.1621 10 6 5.9681 3.7798 -1.9249 11 8 5.2377 4.7312 -2.1055 12 7 7.2272 3.7959 -2.4055 13 6 7.6803 4.8849 -3.1043 14 1 7.0297 5.7317 -3.2658 15 6 8.9764 4.8991 -3.6048 16 7 9.7678 3.8685 -3.4087 17 14 9.5940 6.3832 -4.5563 18 1 8.5170 7.4025 -4.6374 19 1 10.7714 6.9622 -3.8610 20 1 9.9847 5.9651 -5.9267 21 1 -0.3634 0.5138 0.8901 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 1.4776 2.4332 -1.8284 27 1 0.1337 2.1704 -0.6911 28 1 1.3349 3.4442 -0.3704 29 1 2.8398 1.2467 2.0954 30 1 2.5945 2.9882 1.5402 31 1 3.4929 3.0180 -1.5435 32 1 5.5172 1.6979 -1.8003 33 1 6.0890 2.4254 -0.2797 34 1 7.8114 3.0352 -2.2607 35 1 10.6728 3.8786 -3.7578 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397462987.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:26 Heat of formation + Delta-G solvation = -44.958621 kcal Electronic energy + Delta-G solvation = -15322.529500 eV Core-core repulsion = 12740.896309 eV Total energy + Delta-G solvation = -2581.633191 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.37262 -39.56995 -36.11185 -35.10777 -33.29257 -32.32877 -29.06119 -28.19809 -25.85015 -24.59316 -22.02988 -21.18141 -19.98583 -19.57384 -17.76240 -16.98043 -16.62687 -16.37003 -15.76435 -15.68078 -15.35292 -14.67840 -14.38727 -13.86635 -13.84276 -13.53891 -13.13530 -13.03556 -12.91528 -12.82520 -12.44080 -12.42011 -12.11797 -11.99428 -11.68204 -11.53727 -11.26393 -10.55354 -10.31000 -10.03630 -9.15388 -8.48363 -5.97492 1.35996 1.41433 1.55956 2.01852 2.28008 2.81238 2.84639 3.18595 3.46745 3.83382 3.92392 4.13693 4.21432 4.27092 4.44847 4.47494 4.51936 4.63800 4.77356 4.84900 4.94268 4.99686 5.06280 5.12508 5.23105 5.35403 5.38596 5.39701 5.58490 5.91007 6.13639 6.35477 6.57934 7.10438 7.53245 8.08464 8.69313 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.066996 B = 0.004484 C = 0.004378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 417.834805 B = 6243.398259 C = 6393.493373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.084 4.084 3 C -0.126 4.126 4 C -0.122 4.122 5 C -0.159 4.159 6 C 0.007 3.993 7 H 0.110 0.890 8 N -0.653 5.653 9 C 0.067 3.933 10 C 0.437 3.563 11 O -0.624 6.624 12 N -0.571 5.571 13 C -0.336 4.336 14 H 0.078 0.922 15 C -0.012 4.012 16 N -0.920 5.920 17 Si 0.995 3.005 18 H -0.274 1.274 19 H -0.270 1.270 20 H -0.269 1.269 21 H 0.056 0.944 22 H 0.058 0.942 23 H 0.063 0.937 24 H 0.063 0.937 25 H 0.072 0.928 26 H 0.048 0.952 27 H 0.085 0.915 28 H 0.046 0.954 29 H 0.111 0.889 30 H 0.082 0.918 31 H 0.344 0.656 32 H 0.068 0.932 33 H 0.104 0.896 34 H 0.397 0.603 35 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.564 -9.999 6.431 17.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.121 4.121 3 C -0.128 4.128 4 C -0.179 4.179 5 C -0.197 4.197 6 C -0.103 4.103 7 H 0.128 0.872 8 N -0.285 5.285 9 C -0.065 4.065 10 C 0.224 3.776 11 O -0.511 6.511 12 N -0.208 5.208 13 C -0.465 4.465 14 H 0.096 0.904 15 C -0.212 4.212 16 N -0.561 5.561 17 Si 0.818 3.182 18 H -0.198 1.198 19 H -0.195 1.195 20 H -0.194 1.194 21 H 0.075 0.925 22 H 0.077 0.923 23 H 0.082 0.918 24 H 0.082 0.918 25 H 0.091 0.909 26 H 0.067 0.933 27 H 0.103 0.897 28 H 0.066 0.934 29 H 0.129 0.871 30 H 0.101 0.899 31 H 0.164 0.836 32 H 0.086 0.914 33 H 0.122 0.878 34 H 0.231 0.769 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -12.660 -9.041 6.799 16.977 hybrid contribution 0.828 -0.103 -1.096 1.378 sum -11.831 -9.144 5.703 16.004 Atomic orbital electron populations 1.21812 0.94693 1.02051 1.02092 1.21083 0.96733 0.92037 1.02272 1.21983 0.92384 0.97407 1.00991 1.21390 1.00269 0.97351 0.98859 1.23437 1.02825 1.01909 0.91552 1.22670 0.93462 0.93269 1.00920 0.87214 1.59818 1.01574 1.37536 1.29585 1.21569 0.91399 0.94126 0.99396 1.20851 0.82555 0.90303 0.83887 1.90487 1.57438 1.39424 1.63764 1.41924 1.11768 1.18439 1.48709 1.19721 0.97811 0.97560 1.31419 0.90361 1.26062 0.95462 1.01227 0.98462 1.69679 1.08678 1.31211 1.46502 0.84851 0.78030 0.77382 0.77938 1.19828 1.19535 1.19432 0.92475 0.92313 0.91786 0.91818 0.90897 0.93256 0.89672 0.93445 0.87116 0.89915 0.83550 0.91421 0.87837 0.76909 0.91223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 8.92 71.98 0.64 -1.46 16 2 C -0.08 -1.39 6.12 30.59 0.19 -1.20 16 3 C -0.13 -2.71 2.47 -52.18 -0.13 -2.84 16 4 C -0.12 -2.74 8.43 71.99 0.61 -2.14 16 5 C -0.16 -3.64 9.75 30.61 0.30 -3.34 16 6 C 0.01 0.18 5.96 44.93 0.27 0.45 16 7 H 0.11 2.53 7.90 -2.39 -0.02 2.51 16 8 N -0.65 -22.30 6.18 -495.52 -3.06 -25.37 16 9 C 0.07 2.44 6.02 85.56 0.52 2.96 16 10 C 0.44 21.53 7.82 87.66 0.69 22.22 16 11 O -0.62 -35.83 15.78 -3.07 -0.05 -35.88 16 12 N -0.57 -30.02 5.29 -306.98 -1.62 -31.64 16 13 C -0.34 -19.43 9.68 84.04 0.81 -18.62 16 14 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 15 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 16 N -0.92 -50.06 13.05 21.66 0.28 -49.78 16 17 Si 0.99 43.34 29.55 68.60 2.03 45.36 16 18 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 19 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 20 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 21 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 22 H 0.06 0.84 6.45 -2.39 -0.02 0.83 16 23 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 24 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.07 1.07 7.90 -2.39 -0.02 1.06 16 26 H 0.05 1.18 7.58 -2.39 -0.02 1.16 16 27 H 0.08 1.55 5.58 -2.38 -0.01 1.54 16 28 H 0.05 1.22 7.90 -2.39 -0.02 1.20 16 29 H 0.11 2.05 8.05 -2.38 -0.02 2.03 16 30 H 0.08 2.17 8.05 -2.39 -0.02 2.15 16 31 H 0.34 12.39 6.89 -89.70 -0.62 11.77 16 32 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.10 3.42 8.14 -2.39 -0.02 3.40 16 34 H 0.40 19.72 7.90 -92.71 -0.73 18.99 16 35 H 0.28 14.09 8.31 -92.71 -0.77 13.32 16 Total: -1.00 -66.08 292.22 1.67 -64.41 By element: Atomic # 1 Polarization: 37.32 SS G_CDS: -0.26 Total: 37.06 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: 4.35 Total: -4.18 kcal Atomic # 7 Polarization: -102.38 SS G_CDS: -4.40 Total: -106.79 kcal Atomic # 8 Polarization: -35.83 SS G_CDS: -0.05 Total: -35.88 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.36 kcal Total: -66.08 1.67 -64.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397462987.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.456 kcal (2) G-P(sol) polarization free energy of solvation -66.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds