Wall clock time and date at job start Mon Mar 30 2020 02:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86791 * 120.00405 * 2 1 4 4 H 1.48504 * 109.47281 * 264.78069 * 3 2 1 5 5 H 1.48502 * 109.47150 * 24.77838 * 3 2 1 6 6 H 1.48501 * 109.47644 * 144.77815 * 3 2 1 7 7 C 1.37885 * 119.99632 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00437 * 5.77296 * 7 2 1 9 9 C 1.50702 * 119.99810 * 185.77317 * 7 2 1 10 10 H 1.08998 * 109.53411 * 335.27533 * 9 7 2 11 11 C 1.53128 * 109.50169 * 95.36534 * 9 7 2 12 12 C 1.53114 * 109.16014 * 177.59626 * 11 9 7 13 13 C 1.53038 * 109.27917 * 302.34891 * 12 11 9 14 14 N 1.46842 * 109.52465 * 59.17873 * 13 12 11 15 15 C 1.46904 * 111.00118 * 174.16104 * 14 13 12 16 16 C 1.52994 * 109.47352 * 294.21251 * 15 14 13 17 17 C 1.50699 * 109.47324 * 179.97438 * 16 15 14 18 18 N 1.34776 * 119.99959 * 179.97438 * 17 16 15 19 19 O 1.21285 * 119.99940 * 359.97438 * 17 16 15 20 20 C 1.46853 * 111.19742 * 298.25892 * 14 13 12 21 21 H 0.97002 * 120.00188 * 0.02562 * 1 2 3 22 22 H 1.09003 * 109.51990 * 297.50140 * 11 9 7 23 23 H 1.08999 * 109.51857 * 57.62489 * 11 9 7 24 24 H 1.09000 * 109.50465 * 62.28963 * 12 11 9 25 25 H 1.09001 * 109.50015 * 182.36942 * 12 11 9 26 26 H 1.09010 * 109.45781 * 299.16390 * 13 12 11 27 27 H 1.08999 * 109.46609 * 179.19770 * 13 12 11 28 28 H 1.08997 * 109.47016 * 174.20503 * 15 14 13 29 29 H 1.09007 * 109.46594 * 54.21152 * 15 14 13 30 30 H 1.09004 * 109.47050 * 59.99441 * 16 15 14 31 31 H 1.09003 * 109.46783 * 300.00141 * 16 15 14 32 32 H 0.97003 * 120.00182 * 0.02562 * 18 17 16 33 33 H 0.97005 * 119.99887 * 179.72145 * 18 17 16 34 34 H 1.09000 * 109.45978 * 181.76115 * 20 14 13 35 35 H 1.09002 * 109.46082 * 301.73588 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.6070 1.9826 -1.3943 5 1 1.3959 2.6819 0.5868 6 1 3.4872 1.4744 0.8075 7 6 2.0045 -1.1942 0.0005 8 1 1.4686 -2.1271 -0.0931 9 6 3.5057 -1.1975 0.1318 10 1 3.9042 -0.2449 -0.2174 11 6 3.8901 -1.4050 1.5995 12 6 5.4156 -1.4672 1.7155 13 6 5.9442 -2.5967 0.8286 14 7 5.5510 -2.3516 -0.5648 15 6 6.1576 -3.3414 -1.4650 16 6 7.6768 -3.1606 -1.4725 17 6 8.2991 -4.1764 -2.3954 18 7 9.6362 -4.2058 -2.5618 19 8 7.5966 -4.9676 -2.9884 20 6 4.0897 -2.3349 -0.7091 21 1 -0.4850 0.8400 -0.0004 22 1 3.5129 -0.5741 2.1958 23 1 3.4580 -2.3382 1.9606 24 1 5.8441 -0.5189 1.3912 25 1 5.6942 -1.6568 2.7521 26 1 5.5259 -3.5465 1.1623 27 1 7.0313 -2.6345 0.8979 28 1 5.7699 -3.2007 -2.4739 29 1 5.9129 -4.3456 -1.1185 30 1 8.0644 -3.3013 -0.4634 31 1 7.9214 -2.1564 -1.8188 32 1 10.1981 -3.5733 -2.0872 33 1 10.0371 -4.8623 -3.1528 34 1 3.8299 -2.1824 -1.7566 35 1 3.6802 -3.2857 -0.3680 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397627138.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:50 Heat of formation + Delta-G solvation = -54.468784 kcal Electronic energy + Delta-G solvation = -15896.826641 eV Core-core repulsion = 13314.781058 eV Total energy + Delta-G solvation = -2582.045583 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.66129 -38.25826 -34.17401 -33.78881 -32.28900 -30.35951 -29.84466 -25.02286 -24.48300 -21.92897 -21.27449 -20.02327 -18.76531 -17.42937 -17.03818 -16.65456 -15.64372 -15.15774 -14.36788 -14.18687 -13.74876 -13.63763 -13.04649 -12.76391 -12.65782 -12.47006 -11.90401 -11.59085 -11.14128 -10.95967 -10.79986 -10.63732 -10.18042 -10.04223 -9.86667 -9.77836 -9.49708 -9.25727 -8.90707 -8.46034 -7.79411 -6.03958 -4.02998 2.54965 3.34180 3.36619 3.41834 3.45804 4.41943 4.47398 4.84490 5.04878 5.20589 5.26449 5.51128 5.57326 5.63038 5.86962 5.98980 6.05328 6.16326 6.22474 6.37297 6.44259 6.53927 6.59221 6.73010 6.86146 6.94372 7.14115 7.33676 7.50425 7.62132 7.64668 7.90655 8.13706 8.57373 9.01428 9.59933 11.09419 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.041335 B = 0.006128 C = 0.005934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.222483 B = 4567.907285 C = 4717.764629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.072 3.928 3 Si 0.879 3.121 4 H -0.276 1.276 5 H -0.292 1.292 6 H -0.263 1.263 7 C -0.512 4.512 8 H 0.071 0.929 9 C 0.020 3.980 10 H 0.039 0.961 11 C -0.113 4.113 12 C -0.120 4.120 13 C 0.058 3.942 14 N -0.545 5.545 15 C 0.069 3.931 16 C -0.139 4.139 17 C 0.517 3.483 18 N -0.861 5.861 19 O -0.544 6.544 20 C 0.073 3.927 21 H 0.263 0.737 22 H 0.051 0.949 23 H 0.049 0.951 24 H 0.061 0.939 25 H 0.052 0.948 26 H 0.027 0.973 27 H 0.061 0.939 28 H 0.080 0.920 29 H 0.036 0.964 30 H 0.093 0.907 31 H 0.102 0.898 32 H 0.401 0.599 33 H 0.398 0.602 34 H 0.068 0.932 35 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.076 -4.119 -0.378 19.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.130 4.130 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.219 1.219 6 H -0.188 1.188 7 C -0.551 4.551 8 H 0.089 0.911 9 C 0.001 3.999 10 H 0.057 0.943 11 C -0.151 4.151 12 C -0.158 4.158 13 C -0.070 4.070 14 N -0.269 5.269 15 C -0.059 4.059 16 C -0.180 4.180 17 C 0.302 3.698 18 N -0.425 5.425 19 O -0.420 6.420 20 C -0.054 4.054 21 H 0.073 0.927 22 H 0.070 0.930 23 H 0.068 0.932 24 H 0.080 0.920 25 H 0.070 0.930 26 H 0.045 0.955 27 H 0.080 0.920 28 H 0.098 0.902 29 H 0.054 0.946 30 H 0.111 0.889 31 H 0.121 0.879 32 H 0.229 0.771 33 H 0.228 0.772 34 H 0.087 0.913 35 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 18.439 -3.967 -0.807 18.878 hybrid contribution 0.592 0.147 0.238 0.654 sum 19.031 -3.820 -0.570 19.419 Atomic orbital electron populations 1.69918 1.06382 1.26952 1.50740 1.25054 0.94654 0.99023 0.94263 0.86818 0.80152 0.83462 0.78853 1.20195 1.21864 1.18787 1.20976 0.89254 0.94555 1.50274 0.91114 1.19163 0.95824 0.94343 0.90582 0.94256 1.21868 0.91976 1.00834 1.00411 1.21679 0.98542 0.98312 0.97256 1.22064 0.98749 0.97348 0.88820 1.62051 1.11791 1.47858 1.05233 1.21754 0.91574 0.94097 0.98493 1.21692 0.97714 0.99085 0.99462 1.20860 0.82217 0.84726 0.81947 1.43929 1.07957 1.39614 1.50966 1.90757 1.61524 1.41349 1.48365 1.22262 0.83031 0.99038 1.01056 0.92714 0.92981 0.93220 0.92018 0.92978 0.95467 0.92050 0.90189 0.94558 0.88897 0.87932 0.77100 0.77160 0.91333 0.95680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.70 13.96 55.43 0.77 -26.93 16 2 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 3 Si 0.88 21.77 27.01 -169.99 -4.59 17.17 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.26 -6.23 6.78 56.52 0.38 -5.85 16 7 C -0.51 -14.38 8.86 -34.44 -0.31 -14.69 16 8 H 0.07 2.16 8.06 -52.49 -0.42 1.74 16 9 C 0.02 0.48 1.95 -91.69 -0.18 0.30 16 10 H 0.04 0.96 5.25 -51.93 -0.27 0.69 16 11 C -0.11 -2.38 5.27 -26.61 -0.14 -2.52 16 12 C -0.12 -2.03 6.09 -26.65 -0.16 -2.20 16 13 C 0.06 0.91 5.29 -3.84 -0.02 0.89 16 14 N -0.54 -9.46 4.66 -234.67 -1.09 -10.55 16 15 C 0.07 1.06 4.25 -3.82 -0.02 1.04 16 16 C -0.14 -1.56 5.63 -27.89 -0.16 -1.71 16 17 C 0.52 6.07 8.10 -10.99 -0.09 5.98 16 18 N -0.86 -6.15 8.87 31.22 0.28 -5.87 16 19 O -0.54 -8.93 16.82 5.55 0.09 -8.83 16 20 C 0.07 1.53 4.72 -3.84 -0.02 1.51 16 21 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 22 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 23 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 24 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 25 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.03 0.44 8.14 -51.92 -0.42 0.01 16 27 H 0.06 0.78 6.21 -51.93 -0.32 0.46 16 28 H 0.08 1.31 7.95 -51.93 -0.41 0.89 16 29 H 0.04 0.59 8.08 -51.92 -0.42 0.17 16 30 H 0.09 0.88 6.43 -51.93 -0.33 0.55 16 31 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.40 1.62 8.83 -40.82 -0.36 1.26 16 33 H 0.40 2.48 8.93 -40.82 -0.36 2.11 16 34 H 0.07 1.46 8.02 -51.93 -0.42 1.05 16 35 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 281.00 15.07 4.23 4.23 Total: -1.00 -33.07 281.00 -6.93 -39.99 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -5.44 Total: 0.22 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: -1.18 Total: -9.43 kcal Atomic # 7 Polarization: -43.31 SS G_CDS: -0.04 Total: -43.36 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: 0.09 Total: -8.83 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.59 Total: 17.17 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -33.07 -6.93 -39.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397627138.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.474 kcal (2) G-P(sol) polarization free energy of solvation -33.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds