Wall clock time and date at job start Mon Mar 30 2020 02:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00404 * 2 1 4 4 H 1.48500 * 109.47454 * 240.00105 * 3 2 1 5 5 H 1.48496 * 109.47112 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46926 * 119.99896 * 3 2 1 7 7 C 1.37885 * 119.99697 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99816 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99908 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.46946 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46891 * 180.02562 * 10 9 7 12 12 N 1.46906 * 109.47053 * 179.97438 * 11 10 9 13 13 C 1.46895 * 110.99789 * 179.97438 * 12 11 10 14 14 C 1.53004 * 109.47035 * 179.97438 * 13 12 11 15 15 H 1.08998 * 110.85805 * 308.79482 * 14 13 12 16 16 C 1.54477 * 110.97214 * 185.00175 * 14 13 12 17 17 N 1.46761 * 105.47160 * 216.46756 * 16 14 13 18 18 C 1.34416 * 111.30466 * 17.01353 * 17 16 14 19 19 O 1.21281 * 124.94448 * 179.55560 * 18 17 16 20 20 C 1.51281 * 110.11700 * 359.59208 * 18 17 16 21 21 H 0.97007 * 119.99539 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.46980 * 60.00263 * 9 7 2 23 23 H 1.08996 * 109.46805 * 300.00243 * 9 7 2 24 24 H 1.09001 * 109.47372 * 60.00128 * 10 9 7 25 25 H 1.09004 * 109.47108 * 299.99872 * 10 9 7 26 26 H 1.08992 * 109.47056 * 59.99654 * 11 10 9 27 27 H 1.09004 * 109.47006 * 299.99770 * 11 10 9 28 28 H 1.00902 * 111.00068 * 56.04103 * 12 11 10 29 29 H 1.08996 * 109.47424 * 299.99656 * 13 12 11 30 30 H 1.09002 * 109.47411 * 60.00282 * 13 12 11 31 31 H 1.09005 * 110.24144 * 335.46331 * 16 14 13 32 32 H 1.08994 * 110.24674 * 97.46251 * 16 14 13 33 33 H 0.96998 * 124.34759 * 197.03685 * 17 16 14 34 34 H 1.08990 * 110.49229 * 225.06861 * 20 18 17 35 35 H 1.09006 * 110.48292 * 102.42205 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2450 -3.6622 -0.0005 11 6 1.4799 -4.9871 -0.0012 12 7 2.4345 -6.1038 -0.0018 13 6 1.7341 -7.3950 -0.0018 14 6 2.7589 -8.5311 -0.0031 15 1 3.4921 -8.3915 -0.7975 16 6 2.0622 -9.9041 -0.1289 17 7 2.8444 -10.8185 0.7112 18 6 3.6291 -10.1434 1.5686 19 8 4.3714 -10.6541 2.3805 20 6 3.4510 -8.6537 1.3743 21 1 -0.4850 0.8401 0.0004 22 1 0.6239 -2.5567 -0.8903 23 1 0.6246 -2.5570 0.8896 24 1 2.8717 -3.6045 0.8895 25 1 2.8717 -3.6044 -0.8906 26 1 0.8536 -5.0445 -0.8913 27 1 0.8530 -5.0451 0.8886 28 1 3.0695 -6.0372 0.7795 29 1 1.1096 -7.4697 0.8884 30 1 1.1088 -7.4693 -0.8916 31 1 1.0367 -9.8414 0.2353 32 1 2.0751 -10.2400 -1.1657 33 1 2.8010 -11.7859 0.6547 34 1 4.4186 -8.1522 1.3610 35 1 2.8164 -8.2399 2.1581 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398349924.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:34 Heat of formation + Delta-G solvation = -59.093523 kcal Electronic energy + Delta-G solvation = -14927.592019 eV Core-core repulsion = 12345.345892 eV Total energy + Delta-G solvation = -2582.246127 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.53975 -37.37011 -35.95580 -33.71206 -32.17645 -30.44272 -28.28605 -26.50917 -24.29158 -22.21768 -21.04734 -20.74162 -19.97453 -17.62079 -16.86316 -16.27495 -15.38513 -15.22482 -14.71036 -14.34435 -14.13569 -13.86666 -13.59908 -13.48022 -12.90810 -12.32000 -12.00703 -11.70170 -11.42394 -11.32743 -11.16471 -10.81113 -10.58852 -10.52524 -10.06565 -9.70731 -9.42849 -9.34583 -9.07270 -8.34226 -8.27463 -5.99482 -4.01619 2.36109 3.07241 3.34310 3.38422 3.41202 4.00670 4.11397 4.30320 4.47133 4.68879 4.86150 5.10553 5.19581 5.20990 5.36375 5.43938 5.47362 5.67584 5.77028 5.85590 5.95471 6.28578 6.48969 6.68224 6.69914 6.72526 7.12014 7.25644 7.53597 7.68028 7.82770 7.98200 8.00742 8.43943 9.05430 9.62416 11.11944 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.066544 B = 0.003601 C = 0.003485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 420.673934 B = 7774.675145 C = 8033.625094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.520 4.520 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.108 4.108 11 C 0.059 3.941 12 N -0.691 5.691 13 C 0.068 3.932 14 C -0.099 4.099 15 H 0.102 0.898 16 C 0.105 3.895 17 N -0.734 5.734 18 C 0.520 3.480 19 O -0.539 6.539 20 C -0.156 4.156 21 H 0.261 0.739 22 H 0.016 0.984 23 H 0.013 0.987 24 H 0.045 0.955 25 H 0.056 0.944 26 H 0.068 0.932 27 H 0.025 0.975 28 H 0.338 0.662 29 H 0.032 0.968 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.409 0.591 34 H 0.106 0.894 35 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.239 -18.999 -0.927 19.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.558 4.558 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.146 4.146 11 C -0.070 4.070 12 N -0.322 5.322 13 C -0.062 4.062 14 C -0.118 4.118 15 H 0.121 0.879 16 C -0.020 4.020 17 N -0.390 5.390 18 C 0.307 3.693 19 O -0.416 6.416 20 C -0.197 4.197 21 H 0.070 0.930 22 H 0.034 0.966 23 H 0.032 0.968 24 H 0.064 0.936 25 H 0.075 0.925 26 H 0.086 0.914 27 H 0.043 0.957 28 H 0.156 0.844 29 H 0.050 0.950 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.101 0.899 33 H 0.247 0.753 34 H 0.124 0.876 35 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 2.554 -19.001 -1.177 19.208 hybrid contribution -0.067 0.512 0.821 0.970 sum 2.487 -18.488 -0.356 18.658 Atomic orbital electron populations 1.69957 1.06074 1.26685 1.50935 1.25031 0.94855 0.99275 0.95351 0.86649 0.79572 0.83086 0.78647 1.20207 1.21325 1.20247 1.21228 0.93043 0.91075 1.50503 0.92698 1.19061 0.94011 0.91378 0.97109 1.21632 0.99212 0.92952 1.00791 1.22142 0.94075 0.90732 1.00018 1.60555 1.20466 1.01241 1.49923 1.21913 0.94578 0.88671 1.01079 1.22243 0.98565 0.93501 0.97541 0.87943 1.22125 0.95228 0.89163 0.95503 1.46244 1.44218 1.09534 1.38984 1.20988 0.78535 0.90355 0.79429 1.90756 1.38879 1.75306 1.36638 1.22494 1.04318 0.93953 0.98898 0.92976 0.96569 0.96823 0.93614 0.92499 0.91356 0.95661 0.84425 0.94979 0.90365 0.90798 0.89927 0.75312 0.87552 0.87818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.96 13.29 55.43 0.74 -26.23 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 7 C -0.52 -14.75 9.11 -34.44 -0.31 -15.06 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 10 C -0.11 -2.17 5.41 -26.73 -0.14 -2.31 16 11 C 0.06 0.94 5.69 -3.82 -0.02 0.92 16 12 N -0.69 -8.82 6.50 -113.78 -0.74 -9.56 16 13 C 0.07 0.64 5.03 -3.82 -0.02 0.62 16 14 C -0.10 -0.77 3.36 -88.98 -0.30 -1.07 16 15 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 16 C 0.10 0.64 7.35 -3.12 -0.02 0.61 16 17 N -0.73 -5.73 6.24 -59.21 -0.37 -6.10 16 18 C 0.52 5.75 8.43 -10.86 -0.09 5.66 16 19 O -0.54 -8.32 18.03 5.56 0.10 -8.22 16 20 C -0.16 -1.39 5.88 -26.74 -0.16 -1.55 16 21 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 22 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 23 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 26 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 27 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.34 4.07 8.22 -39.29 -0.32 3.75 16 29 H 0.03 0.30 7.93 -51.93 -0.41 -0.11 16 30 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.40 7.89 -51.93 -0.41 -0.01 16 32 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.41 2.56 8.96 -40.82 -0.37 2.19 16 34 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.10 0.89 7.76 -51.93 -0.40 0.49 16 LS Contribution 293.84 15.07 4.43 4.43 Total: -1.00 -32.80 293.84 -7.85 -40.66 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -5.68 Total: -1.39 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: -1.31 Total: -10.24 kcal Atomic # 7 Polarization: -41.51 SS G_CDS: -0.37 Total: -41.88 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: 0.10 Total: -8.22 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -32.80 -7.85 -40.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398349924.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.435 kcal (2) G-P(sol) polarization free energy of solvation -32.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds