Wall clock time and date at job start Mon Mar 30 2020 02:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00404 * 2 1 4 4 H 1.48500 * 109.47454 * 240.00105 * 3 2 1 5 5 H 1.48496 * 109.47112 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46926 * 119.99896 * 3 2 1 7 7 C 1.37885 * 119.99697 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99816 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99908 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.46946 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46891 * 180.02562 * 10 9 7 12 12 N 1.46906 * 109.47053 * 179.97438 * 11 10 9 13 13 C 1.46895 * 110.99789 * 179.97438 * 12 11 10 14 14 C 1.53004 * 109.47035 * 179.97438 * 13 12 11 15 15 H 1.08998 * 110.85805 * 308.79482 * 14 13 12 16 16 C 1.54477 * 110.97214 * 185.00175 * 14 13 12 17 17 N 1.46761 * 105.47160 * 216.46756 * 16 14 13 18 18 C 1.34416 * 111.30466 * 17.01353 * 17 16 14 19 19 O 1.21281 * 124.94448 * 179.55560 * 18 17 16 20 20 C 1.51281 * 110.11700 * 359.59208 * 18 17 16 21 21 H 0.97007 * 119.99539 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.46980 * 60.00263 * 9 7 2 23 23 H 1.08996 * 109.46805 * 300.00243 * 9 7 2 24 24 H 1.09001 * 109.47372 * 60.00128 * 10 9 7 25 25 H 1.09004 * 109.47108 * 299.99872 * 10 9 7 26 26 H 1.08992 * 109.47056 * 59.99654 * 11 10 9 27 27 H 1.09004 * 109.47006 * 299.99770 * 11 10 9 28 28 H 1.00902 * 111.00068 * 56.04103 * 12 11 10 29 29 H 1.08996 * 109.47424 * 299.99656 * 13 12 11 30 30 H 1.09002 * 109.47411 * 60.00282 * 13 12 11 31 31 H 1.09005 * 110.24144 * 335.46331 * 16 14 13 32 32 H 1.08994 * 110.24674 * 97.46251 * 16 14 13 33 33 H 0.96998 * 124.34759 * 197.03685 * 17 16 14 34 34 H 1.08990 * 110.49229 * 225.06861 * 20 18 17 35 35 H 1.09006 * 110.48292 * 102.42205 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2450 -3.6622 -0.0005 11 6 1.4799 -4.9871 -0.0012 12 7 2.4345 -6.1038 -0.0018 13 6 1.7341 -7.3950 -0.0018 14 6 2.7589 -8.5311 -0.0031 15 1 3.4921 -8.3915 -0.7975 16 6 2.0622 -9.9041 -0.1289 17 7 2.8444 -10.8185 0.7112 18 6 3.6291 -10.1434 1.5686 19 8 4.3714 -10.6541 2.3805 20 6 3.4510 -8.6537 1.3743 21 1 -0.4850 0.8401 0.0004 22 1 0.6239 -2.5567 -0.8903 23 1 0.6246 -2.5570 0.8896 24 1 2.8717 -3.6045 0.8895 25 1 2.8717 -3.6044 -0.8906 26 1 0.8536 -5.0445 -0.8913 27 1 0.8530 -5.0451 0.8886 28 1 3.0695 -6.0372 0.7795 29 1 1.1096 -7.4697 0.8884 30 1 1.1088 -7.4693 -0.8916 31 1 1.0367 -9.8414 0.2353 32 1 2.0751 -10.2400 -1.1657 33 1 2.8010 -11.7859 0.6547 34 1 4.4186 -8.1522 1.3610 35 1 2.8164 -8.2399 2.1581 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398349924.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:34 Heat of formation + Delta-G solvation = -84.168063 kcal Electronic energy + Delta-G solvation = -14928.679333 eV Core-core repulsion = 12345.345892 eV Total energy + Delta-G solvation = -2583.333440 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.30346 -38.34090 -37.09522 -35.44861 -33.63599 -31.76264 -29.13603 -28.02205 -25.55219 -23.69270 -22.15790 -21.49977 -21.26763 -18.45935 -18.37722 -17.65374 -16.56499 -16.45700 -16.01458 -15.54771 -15.35811 -14.91096 -14.38536 -14.35298 -14.23085 -13.85232 -13.50355 -13.11159 -12.72472 -12.63593 -12.38769 -12.31093 -12.01462 -11.93448 -11.47220 -11.34403 -11.07230 -10.92469 -10.52829 -10.10065 -9.31488 -8.18569 -6.29246 1.41653 1.44529 1.52411 1.52449 2.41997 2.43769 3.14672 3.17923 3.39861 3.60253 3.96624 4.16110 4.29087 4.39108 4.49670 4.63824 4.68873 4.77607 4.78468 4.79275 5.01032 5.05298 5.16133 5.28427 5.29755 5.54966 5.79136 5.84076 5.89033 5.99132 6.10977 6.30118 6.53168 6.88109 7.22322 7.39966 8.93057 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.066544 B = 0.003601 C = 0.003485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 420.673934 B = 7774.675145 C = 8033.625094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.964 3.036 4 H -0.267 1.267 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.545 4.545 8 H 0.059 0.941 9 C 0.024 3.976 10 C -0.095 4.095 11 C 0.072 3.928 12 N -0.693 5.693 13 C 0.069 3.931 14 C -0.088 4.088 15 H 0.103 0.897 16 C 0.107 3.893 17 N -0.721 5.721 18 C 0.512 3.488 19 O -0.593 6.593 20 C -0.154 4.154 21 H 0.263 0.737 22 H -0.007 1.007 23 H -0.009 1.009 24 H 0.049 0.951 25 H 0.053 0.947 26 H 0.066 0.934 27 H 0.024 0.976 28 H 0.343 0.657 29 H 0.038 0.962 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.108 0.892 33 H 0.417 0.583 34 H 0.104 0.896 35 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.598 -19.408 -1.569 19.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.788 3.212 4 H -0.192 1.192 5 H -0.209 1.209 6 H -0.192 1.192 7 C -0.583 4.583 8 H 0.077 0.923 9 C -0.013 4.013 10 C -0.133 4.133 11 C -0.057 4.057 12 N -0.324 5.324 13 C -0.060 4.060 14 C -0.107 4.107 15 H 0.121 0.879 16 C -0.017 4.017 17 N -0.376 5.376 18 C 0.300 3.700 19 O -0.474 6.474 20 C -0.195 4.195 21 H 0.072 0.928 22 H 0.011 0.989 23 H 0.009 0.991 24 H 0.067 0.933 25 H 0.071 0.929 26 H 0.084 0.916 27 H 0.042 0.958 28 H 0.161 0.839 29 H 0.057 0.943 30 H 0.105 0.895 31 H 0.107 0.893 32 H 0.126 0.874 33 H 0.256 0.744 34 H 0.123 0.877 35 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 2.895 -19.436 -1.853 19.737 hybrid contribution -0.227 0.603 0.992 1.183 sum 2.668 -18.833 -0.861 19.040 Atomic orbital electron populations 1.70086 1.07767 1.27803 1.51760 1.25980 0.95781 1.03346 0.94774 0.85517 0.78291 0.78152 0.79194 1.19173 1.20853 1.19214 1.21709 0.93568 0.92545 1.50451 0.92279 1.18978 0.94479 0.93095 0.94795 1.21392 0.98027 0.93176 1.00697 1.21819 0.93939 0.90041 0.99899 1.60466 1.19996 1.01616 1.50354 1.21978 0.94948 0.87313 1.01808 1.22120 0.98098 0.93852 0.96669 0.87866 1.22282 0.95228 0.87594 0.96619 1.46267 1.43071 1.10307 1.37921 1.21343 0.78203 0.91367 0.79112 1.90725 1.41336 1.76306 1.39015 1.22492 1.04574 0.92565 0.99819 0.92784 0.98892 0.99094 0.93271 0.92866 0.91591 0.95794 0.83882 0.94342 0.89499 0.89291 0.87399 0.74362 0.87719 0.87408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.81 13.29 21.45 0.28 -56.53 16 2 C 0.00 -0.07 5.46 84.66 0.46 0.39 16 3 Si 0.96 44.22 29.54 68.60 2.03 46.25 16 4 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 7 C -0.54 -31.09 9.11 25.60 0.23 -30.85 16 8 H 0.06 3.24 7.74 -2.91 -0.02 3.21 16 9 C 0.02 1.26 4.97 29.85 0.15 1.41 16 10 C -0.09 -3.78 5.41 30.59 0.17 -3.62 16 11 C 0.07 2.24 5.69 86.30 0.49 2.73 16 12 N -0.69 -16.31 6.50 -513.88 -3.34 -19.65 16 13 C 0.07 1.12 5.03 86.31 0.43 1.56 16 14 C -0.09 -1.13 3.36 -9.73 -0.03 -1.16 16 15 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 16 C 0.11 0.94 7.35 86.83 0.64 1.58 16 17 N -0.72 -9.73 6.24 -459.82 -2.87 -12.60 16 18 C 0.51 10.85 8.43 87.90 0.74 11.59 16 19 O -0.59 -18.48 18.03 -3.03 -0.05 -18.53 16 20 C -0.15 -2.52 5.88 30.59 0.18 -2.34 16 21 H 0.26 15.06 8.31 -92.70 -0.77 14.29 16 22 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 23 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 24 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 25 H 0.05 2.14 8.14 -2.38 -0.02 2.12 16 26 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 27 H 0.02 0.75 8.14 -2.38 -0.02 0.73 16 28 H 0.34 7.61 8.22 -89.69 -0.74 6.87 16 29 H 0.04 0.61 7.93 -2.39 -0.02 0.59 16 30 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.09 0.61 7.89 -2.38 -0.02 0.59 16 32 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.42 4.39 8.96 -92.71 -0.83 3.56 16 34 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.11 1.68 7.76 -2.38 -0.02 1.66 16 Total: -1.00 -71.38 293.84 -0.98 -72.36 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -0.49 Total: 7.41 kcal Atomic # 6 Polarization: -22.17 SS G_CDS: 3.46 Total: -18.70 kcal Atomic # 7 Polarization: -82.85 SS G_CDS: -5.93 Total: -88.78 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: -0.05 Total: -18.53 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -71.38 -0.98 -72.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398349924.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.808 kcal (2) G-P(sol) polarization free energy of solvation -71.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds