Wall clock time and date at job start Mon Mar 30 2020 03:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86805 * 119.99897 * 2 1 4 4 H 1.48491 * 109.47436 * 270.00521 * 3 2 1 5 5 H 1.48507 * 109.46845 * 30.00106 * 3 2 1 6 6 H 1.48498 * 109.46991 * 149.99770 * 3 2 1 7 7 C 1.37873 * 120.00512 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99649 * 359.97438 * 7 2 1 9 9 C 1.50694 * 120.00475 * 179.97438 * 7 2 1 10 10 N 1.46899 * 109.47589 * 179.97438 * 9 7 2 11 11 C 1.46760 * 110.99710 * 66.04512 * 10 9 7 12 12 C 1.53188 * 109.90077 * 174.77008 * 11 10 9 13 13 C 1.52887 * 108.88531 * 58.73221 * 12 11 10 14 14 H 1.09007 * 109.46563 * 61.15918 * 13 12 11 15 15 O 1.42784 * 110.65601 * 181.88145 * 13 12 11 16 16 C 1.43185 * 113.19585 * 179.30927 * 15 13 12 17 17 C 1.53007 * 109.69623 * 301.81909 * 16 15 13 18 18 N 1.47169 * 109.68360 * 55.79944 * 17 16 15 19 19 C 1.46785 * 110.27357 * 301.94591 * 18 17 16 20 20 H 1.09005 * 109.44230 * 299.92507 * 19 18 17 21 21 C 1.47001 * 111.01059 * 301.42434 * 10 9 7 22 22 H 0.96998 * 120.00319 * 359.97438 * 1 2 3 23 23 H 1.09003 * 109.46807 * 60.00164 * 9 7 2 24 24 H 1.08998 * 109.47586 * 300.00221 * 9 7 2 25 25 H 1.08992 * 109.39835 * 54.64090 * 11 10 9 26 26 H 1.08997 * 109.40218 * 294.89640 * 11 10 9 27 27 H 1.09000 * 109.56307 * 298.91198 * 12 11 10 28 28 H 1.08997 * 109.66634 * 178.61186 * 12 11 10 29 29 H 1.08998 * 109.43787 * 61.83876 * 16 15 13 30 30 H 1.08999 * 109.43616 * 181.75704 * 16 15 13 31 31 H 1.08999 * 109.39614 * 295.75144 * 17 16 15 32 32 H 1.08999 * 109.46284 * 175.88477 * 17 16 15 33 33 H 1.00901 * 111.00049 * 178.50657 * 18 17 16 34 34 H 1.09002 * 109.61836 * 65.83118 * 21 10 9 35 35 H 1.09006 * 109.43937 * 305.61266 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1939 -0.0011 10 7 4.0013 -2.5789 -0.0010 11 6 3.6517 -3.2604 -1.2528 12 6 4.2840 -4.6554 -1.2813 13 6 3.7805 -5.4516 -0.0770 14 1 2.6971 -5.5554 -0.1374 15 8 4.3813 -6.7464 -0.0424 16 6 3.9587 -7.5345 1.0758 17 6 4.2880 -6.8011 2.3776 18 7 3.6732 -5.4640 2.3624 19 6 4.1505 -4.6978 1.2050 20 1 5.2337 -4.5901 1.2629 21 6 3.5029 -3.3141 1.1704 22 1 -0.4850 0.8400 0.0004 23 1 3.8751 -0.6803 0.8889 24 1 3.8746 -0.6799 -0.8911 25 1 4.0208 -2.6784 -2.0972 26 1 2.5680 -3.3527 -1.3244 27 1 5.3691 -4.5654 -1.2316 28 1 4.0018 -5.1674 -2.2012 29 1 2.8831 -7.7010 1.0164 30 1 4.4757 -8.4939 1.0594 31 1 5.3692 -6.7021 2.4737 32 1 3.8998 -7.3693 3.2228 33 1 3.8578 -4.9714 3.2234 34 1 2.4202 -3.4199 1.1026 35 1 3.7607 -2.7681 2.0780 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404037943.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:47 Heat of formation + Delta-G solvation = -61.481381 kcal Electronic energy + Delta-G solvation = -16529.536320 eV Core-core repulsion = 13947.186648 eV Total energy + Delta-G solvation = -2582.349672 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.15650 -38.60200 -35.82481 -34.98163 -33.34094 -31.34054 -29.39780 -27.66311 -25.47654 -24.02048 -23.28524 -21.57564 -20.99548 -18.96955 -17.58772 -17.56174 -16.70320 -16.24522 -16.11671 -15.75628 -15.45916 -15.15340 -14.59790 -14.35634 -14.26790 -14.03284 -13.39841 -13.04451 -12.85522 -12.45504 -12.37425 -12.29863 -11.93289 -11.90636 -11.73046 -11.52106 -11.35117 -10.79526 -10.61414 -9.51302 -9.07006 -8.31509 -6.37582 1.36843 1.38152 1.50093 2.34126 2.69292 2.85420 3.03581 3.46360 3.64882 3.91098 3.99015 4.08105 4.23726 4.27708 4.40931 4.43369 4.54658 4.71972 4.74407 4.78730 4.88934 4.92683 4.98090 5.04606 5.06667 5.13011 5.26142 5.49106 5.84157 6.05655 6.14966 6.25347 6.32279 6.40316 6.68997 7.29460 8.84839 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.046225 B = 0.007091 C = 0.006813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.591700 B = 3947.490069 C = 4108.988280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.011 3.989 3 Si 0.951 3.049 4 H -0.265 1.265 5 H -0.285 1.285 6 H -0.244 1.244 7 C -0.552 4.552 8 H 0.033 0.967 9 C 0.161 3.839 10 N -0.531 5.531 11 C 0.064 3.936 12 C -0.096 4.096 13 C 0.100 3.900 14 H 0.040 0.960 15 O -0.393 6.393 16 C 0.053 3.947 17 C 0.024 3.976 18 N -0.695 5.695 19 C 0.072 3.928 20 H 0.052 0.948 21 C 0.081 3.919 22 H 0.266 0.734 23 H 0.033 0.967 24 H 0.036 0.964 25 H 0.083 0.917 26 H 0.013 0.987 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.051 0.949 30 H 0.126 0.874 31 H 0.044 0.956 32 H 0.110 0.890 33 H 0.353 0.647 34 H 0.017 0.983 35 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.107 -11.523 2.760 16.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.187 4.187 3 Si 0.774 3.226 4 H -0.190 1.190 5 H -0.211 1.211 6 H -0.168 1.168 7 C -0.591 4.591 8 H 0.051 0.949 9 C 0.034 3.966 10 N -0.254 5.254 11 C -0.064 4.064 12 C -0.135 4.135 13 C 0.042 3.958 14 H 0.058 0.942 15 O -0.312 6.312 16 C -0.023 4.023 17 C -0.105 4.105 18 N -0.328 5.328 19 C -0.038 4.038 20 H 0.069 0.931 21 C -0.048 4.048 22 H 0.075 0.925 23 H 0.051 0.949 24 H 0.054 0.946 25 H 0.101 0.899 26 H 0.031 0.969 27 H 0.102 0.898 28 H 0.106 0.894 29 H 0.069 0.931 30 H 0.144 0.856 31 H 0.062 0.938 32 H 0.128 0.872 33 H 0.173 0.827 34 H 0.035 0.965 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 11.033 -11.691 2.348 16.246 hybrid contribution -0.721 1.187 0.486 1.472 sum 10.312 -10.504 2.835 14.990 Atomic orbital electron populations 1.70084 1.08439 1.28212 1.52079 1.25942 0.95520 1.03523 0.93747 0.85657 0.79518 0.78127 0.79316 1.19026 1.21122 1.16753 1.21898 0.92738 0.93196 1.51264 0.94922 1.20059 0.91835 0.87318 0.97393 1.62307 1.58113 1.02909 1.02078 1.21905 0.97277 0.94270 0.92953 1.21502 1.01833 0.93146 0.96977 1.22036 0.95771 0.83009 0.95023 0.94221 1.87939 1.69136 1.26429 1.47693 1.22913 1.00230 0.94717 0.84438 1.22681 0.97807 0.90147 0.99865 1.60573 1.62112 1.04540 1.05624 1.21895 0.97428 0.92622 0.91874 0.93053 1.21661 0.96563 0.92577 0.94022 0.92502 0.94876 0.94628 0.89901 0.96885 0.89847 0.89389 0.93093 0.85616 0.93800 0.87230 0.82746 0.96474 0.91457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.22 13.96 21.44 0.30 -58.92 16 2 C 0.01 0.62 5.47 84.65 0.46 1.08 16 3 Si 0.95 43.46 27.47 68.60 1.88 45.35 16 4 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 5 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 6 H -0.24 -10.31 6.54 99.48 0.65 -9.66 16 7 C -0.55 -31.33 8.29 25.60 0.21 -31.12 16 8 H 0.03 2.09 6.12 -2.91 -0.02 2.07 16 9 C 0.16 7.61 4.19 85.56 0.36 7.96 16 10 N -0.53 -21.93 4.84 -900.91 -4.36 -26.29 16 11 C 0.06 2.47 5.14 86.39 0.44 2.92 16 12 C -0.10 -3.03 5.81 30.62 0.18 -2.86 16 13 C 0.10 3.28 2.65 30.64 0.08 3.36 16 14 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 15 O -0.39 -11.59 10.55 -148.98 -1.57 -13.16 16 16 C 0.05 1.20 6.98 71.98 0.50 1.70 16 17 C 0.02 0.51 6.74 86.25 0.58 1.09 16 18 N -0.69 -19.23 6.63 -491.05 -3.26 -22.49 16 19 C 0.07 2.35 2.55 44.96 0.11 2.47 16 20 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 21 C 0.08 3.21 4.66 86.22 0.40 3.61 16 22 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 23 H 0.03 1.55 7.20 -2.39 -0.02 1.53 16 24 H 0.04 1.62 7.49 -2.39 -0.02 1.61 16 25 H 0.08 2.99 8.07 -2.39 -0.02 2.97 16 26 H 0.01 0.58 7.00 -2.39 -0.02 0.56 16 27 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 28 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 29 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.13 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.35 8.68 8.85 -89.69 -0.79 7.88 16 34 H 0.02 0.81 6.61 -2.39 -0.02 0.80 16 35 H 0.07 2.62 8.13 -2.38 -0.02 2.60 16 Total: -1.00 -66.12 269.61 -3.45 -69.57 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: 0.22 Total: 15.72 kcal Atomic # 6 Polarization: -13.11 SS G_CDS: 3.34 Total: -9.77 kcal Atomic # 7 Polarization: -100.39 SS G_CDS: -7.32 Total: -107.71 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: -1.57 Total: -13.16 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 1.88 Total: 45.35 kcal Total: -66.12 -3.45 -69.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404037943.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.087 kcal (2) G-P(sol) polarization free energy of solvation -66.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds