Wall clock time and date at job start Mon Mar 30 2020 03:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52991 * 109.47178 * 2 1 4 4 N 1.46902 * 109.46994 * 240.00187 * 2 1 3 5 5 C 1.50694 * 109.47055 * 120.00246 * 2 1 3 6 6 O 1.21278 * 120.00054 * 266.06704 * 5 2 1 7 7 N 1.34780 * 120.00218 * 85.78870 * 5 2 1 8 8 C 1.46497 * 119.99835 * 184.96327 * 7 5 2 9 9 C 1.53001 * 109.46871 * 184.88851 * 8 7 5 10 10 C 1.50701 * 115.55307 * 304.60356 * 9 8 7 11 11 H 1.08002 * 119.99979 * 144.86911 * 10 9 8 12 12 C 1.37873 * 119.99825 * 324.87388 * 10 9 8 13 13 N 1.31519 * 120.00146 * 3.24182 * 12 10 9 14 14 Si 1.86802 * 119.99920 * 183.24714 * 12 10 9 15 15 H 1.48494 * 109.46889 * 359.97438 * 14 12 10 16 16 H 1.48504 * 109.47151 * 119.99770 * 14 12 10 17 17 H 1.48502 * 109.46773 * 239.99731 * 14 12 10 18 18 C 1.53005 * 117.50124 * 158.93316 * 9 8 7 19 19 C 1.53005 * 117.49943 * 90.27546 * 9 8 7 20 20 H 1.08998 * 109.47219 * 300.00080 * 1 2 3 21 21 H 1.08999 * 109.47299 * 59.99832 * 1 2 3 22 22 H 1.09002 * 109.46961 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47214 * 180.02562 * 3 2 1 24 24 H 1.09009 * 109.47232 * 300.00277 * 3 2 1 25 25 H 1.08998 * 109.47111 * 59.99853 * 3 2 1 26 26 H 1.00902 * 111.00241 * 59.99614 * 4 2 1 27 27 H 1.00899 * 111.00099 * 183.95886 * 4 2 1 28 28 H 0.96994 * 120.00047 * 4.96806 * 7 5 2 29 29 H 1.08998 * 109.47516 * 304.88753 * 8 7 5 30 30 H 1.09000 * 109.47457 * 64.89288 * 8 7 5 31 31 H 0.96993 * 120.00044 * 185.00242 * 13 12 10 32 32 H 1.09000 * 117.49644 * 359.97438 * 18 9 8 33 33 H 1.08995 * 117.50230 * 145.02211 * 18 9 8 34 34 H 1.09007 * 117.50109 * 214.98326 * 19 9 8 35 35 H 1.09001 * 117.49719 * 359.97381 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0323 -0.7104 1.2304 6 8 2.3024 -0.0769 2.2287 7 7 2.1762 -2.0505 1.2233 8 6 2.5597 -2.7525 2.4506 9 6 2.7717 -4.2365 2.1443 10 6 1.6068 -4.9392 1.4961 11 1 1.7827 -5.7150 0.7655 12 6 0.3165 -4.5918 1.8355 13 7 0.1011 -3.6042 2.6770 14 14 -1.1259 -5.5239 1.1005 15 1 -0.6192 -6.5811 0.1892 16 1 -1.9193 -6.1473 2.1900 17 1 -1.9857 -4.5836 0.3376 18 6 3.6293 -5.0440 3.1207 19 6 4.1788 -4.6802 1.7391 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 3.1300 1.4424 -0.0005 24 1 1.6766 1.9563 -0.8900 25 1 1.6767 1.9562 0.8900 26 1 1.6961 -0.2350 -2.0386 27 1 3.0262 -0.7626 -1.1910 28 1 2.0258 -2.5501 0.4057 29 1 3.4845 -2.3261 2.8393 30 1 1.7694 -2.6442 3.1934 31 1 -0.8015 -3.4065 2.9720 32 1 4.0429 -4.5179 3.9811 33 1 3.3512 -6.0835 3.2940 34 1 4.2620 -5.4807 1.0039 35 1 4.9534 -3.9149 1.6904 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404199025.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:15 Heat of formation + Delta-G solvation = -20.839642 kcal Electronic energy + Delta-G solvation = -16534.471948 eV Core-core repulsion = 13953.884634 eV Total energy + Delta-G solvation = -2580.587314 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.22251 -36.79839 -35.37054 -32.85724 -32.11562 -29.17941 -27.04751 -26.12100 -25.34962 -22.05532 -21.17164 -19.20669 -18.55936 -16.87177 -16.07558 -15.47016 -14.81529 -14.59140 -14.16315 -13.90727 -13.34916 -13.13640 -12.69248 -12.53006 -12.04537 -11.67668 -11.61215 -11.52127 -11.31636 -11.08724 -10.98517 -10.66758 -10.47797 -10.21428 -9.66334 -9.05056 -8.84217 -8.82379 -8.53123 -8.23077 -7.70279 -5.96136 -4.15856 3.24041 3.33602 3.36853 3.53592 4.22527 4.34086 4.63488 4.97619 5.15004 5.34199 5.49682 5.64109 5.77631 5.93931 6.05594 6.07334 6.19716 6.29176 6.36095 6.55069 6.60346 6.66156 6.77529 6.93236 7.14325 7.19412 7.29426 7.55556 7.62929 7.79131 8.02343 8.35709 8.73162 8.90616 9.34571 9.47625 10.92595 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.022702 B = 0.011050 C = 0.008701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.080701 B = 2533.250706 C = 3217.246503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.097 3.903 3 C -0.163 4.163 4 N -0.833 5.833 5 C 0.512 3.488 6 O -0.574 6.574 7 N -0.665 5.665 8 C 0.160 3.840 9 C 0.037 3.963 10 C -0.492 4.492 11 H 0.061 0.939 12 C 0.074 3.926 13 N -0.869 5.869 14 Si 0.894 3.106 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.283 1.283 18 C -0.200 4.200 19 C -0.212 4.212 20 H 0.063 0.937 21 H 0.056 0.944 22 H 0.073 0.927 23 H 0.053 0.947 24 H 0.054 0.946 25 H 0.071 0.929 26 H 0.342 0.658 27 H 0.343 0.657 28 H 0.409 0.591 29 H 0.019 0.981 30 H 0.114 0.886 31 H 0.261 0.739 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.667 5.492 -6.588 8.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.002 3.998 3 C -0.223 4.223 4 N -0.364 5.364 5 C 0.296 3.704 6 O -0.455 6.455 7 N -0.311 5.311 8 C 0.037 3.963 9 C 0.037 3.963 10 C -0.529 4.529 11 H 0.079 0.921 12 C -0.129 4.129 13 N -0.506 5.506 14 Si 0.721 3.279 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.209 1.209 18 C -0.239 4.239 19 C -0.249 4.249 20 H 0.082 0.918 21 H 0.075 0.925 22 H 0.092 0.908 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.090 0.910 26 H 0.155 0.845 27 H 0.156 0.844 28 H 0.245 0.755 29 H 0.037 0.963 30 H 0.131 0.869 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.254 5.399 -5.550 7.844 hybrid contribution -0.316 0.062 -0.883 0.940 sum 0.938 5.461 -6.432 8.490 Atomic orbital electron populations 1.21701 0.92034 1.03607 1.01594 1.20997 0.96958 0.92034 0.89839 1.22369 1.01191 0.96417 1.02343 1.58825 1.16397 1.57711 1.03516 1.20009 0.78645 0.83305 0.88471 1.90607 1.52930 1.66851 1.35112 1.45649 1.65455 1.05569 1.14461 1.21151 0.98391 0.89086 0.87699 1.19244 0.88450 0.91650 0.97001 1.20555 0.89034 1.19498 1.23833 0.92073 1.24987 0.98770 0.94182 0.94996 1.69884 1.21084 1.27212 1.32388 0.86507 0.82439 0.79866 0.79050 1.19769 1.21029 1.20883 1.22947 1.08053 1.01080 0.91805 1.22935 1.00180 1.03284 0.98485 0.91827 0.92484 0.90836 0.92745 0.92688 0.91020 0.84499 0.84425 0.75512 0.96280 0.86859 0.92863 0.91536 0.90243 0.90647 0.91458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.07 8.75 37.16 0.33 -1.75 16 2 C 0.10 1.58 1.16 -132.76 -0.15 1.42 16 3 C -0.16 -2.31 8.31 37.15 0.31 -2.00 16 4 N -0.83 -11.36 8.03 -0.20 0.00 -11.37 16 5 C 0.51 10.86 6.62 -10.99 -0.07 10.79 16 6 O -0.57 -14.04 16.09 5.56 0.09 -13.95 16 7 N -0.67 -14.75 5.13 -60.30 -0.31 -15.06 16 8 C 0.16 3.90 4.62 -4.04 -0.02 3.88 16 9 C 0.04 0.89 2.06 -155.65 -0.32 0.57 16 10 C -0.49 -12.65 8.35 -34.44 -0.29 -12.94 16 11 H 0.06 1.58 7.82 -52.49 -0.41 1.17 16 12 C 0.07 1.91 5.33 -17.82 -0.10 1.82 16 13 N -0.87 -23.14 10.16 55.43 0.56 -22.58 16 14 Si 0.89 20.27 29.54 -169.99 -5.02 15.25 16 15 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 16 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 18 C -0.20 -4.46 9.96 -26.69 -0.27 -4.72 16 19 C -0.21 -4.51 9.93 -26.69 -0.27 -4.77 16 20 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 21 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 22 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 23 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.05 0.62 8.14 -51.92 -0.42 0.19 16 25 H 0.07 1.11 7.87 -51.93 -0.41 0.70 16 26 H 0.34 3.72 9.00 -39.29 -0.35 3.36 16 27 H 0.34 4.43 8.98 -39.29 -0.35 4.08 16 28 H 0.41 8.99 7.24 -40.82 -0.30 8.70 16 29 H 0.02 0.46 8.06 -51.93 -0.42 0.05 16 30 H 0.11 3.12 5.85 -51.93 -0.30 2.82 16 31 H 0.26 6.77 8.32 -40.82 -0.34 6.43 16 32 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 33 H 0.08 1.75 8.14 -51.93 -0.42 1.33 16 34 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 35 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 291.75 15.07 4.40 4.40 Total: -1.00 -28.24 291.75 -6.61 -34.85 By element: Atomic # 1 Polarization: 21.63 SS G_CDS: -5.48 Total: 16.15 kcal Atomic # 6 Polarization: -6.85 SS G_CDS: -0.84 Total: -7.69 kcal Atomic # 7 Polarization: -49.26 SS G_CDS: 0.25 Total: -49.00 kcal Atomic # 8 Polarization: -14.04 SS G_CDS: 0.09 Total: -13.95 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -28.24 -6.61 -34.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404199025.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.012 kcal (2) G-P(sol) polarization free energy of solvation -28.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds