Wall clock time and date at job start Mon Mar 30 2020 03:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52991 * 109.47178 * 2 1 4 4 N 1.46902 * 109.46994 * 240.00187 * 2 1 3 5 5 C 1.50694 * 109.47055 * 120.00246 * 2 1 3 6 6 O 1.21278 * 120.00054 * 266.06704 * 5 2 1 7 7 N 1.34780 * 120.00218 * 85.78870 * 5 2 1 8 8 C 1.46497 * 119.99835 * 184.96327 * 7 5 2 9 9 C 1.53001 * 109.46871 * 184.88851 * 8 7 5 10 10 C 1.50701 * 115.55307 * 304.60356 * 9 8 7 11 11 H 1.08002 * 119.99979 * 144.86911 * 10 9 8 12 12 C 1.37873 * 119.99825 * 324.87388 * 10 9 8 13 13 N 1.31519 * 120.00146 * 3.24182 * 12 10 9 14 14 Si 1.86802 * 119.99920 * 183.24714 * 12 10 9 15 15 H 1.48494 * 109.46889 * 359.97438 * 14 12 10 16 16 H 1.48504 * 109.47151 * 119.99770 * 14 12 10 17 17 H 1.48502 * 109.46773 * 239.99731 * 14 12 10 18 18 C 1.53005 * 117.50124 * 158.93316 * 9 8 7 19 19 C 1.53005 * 117.49943 * 90.27546 * 9 8 7 20 20 H 1.08998 * 109.47219 * 300.00080 * 1 2 3 21 21 H 1.08999 * 109.47299 * 59.99832 * 1 2 3 22 22 H 1.09002 * 109.46961 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47214 * 180.02562 * 3 2 1 24 24 H 1.09009 * 109.47232 * 300.00277 * 3 2 1 25 25 H 1.08998 * 109.47111 * 59.99853 * 3 2 1 26 26 H 1.00902 * 111.00241 * 59.99614 * 4 2 1 27 27 H 1.00899 * 111.00099 * 183.95886 * 4 2 1 28 28 H 0.96994 * 120.00047 * 4.96806 * 7 5 2 29 29 H 1.08998 * 109.47516 * 304.88753 * 8 7 5 30 30 H 1.09000 * 109.47457 * 64.89288 * 8 7 5 31 31 H 0.96993 * 120.00044 * 185.00242 * 13 12 10 32 32 H 1.09000 * 117.49644 * 359.97438 * 18 9 8 33 33 H 1.08995 * 117.50230 * 145.02211 * 18 9 8 34 34 H 1.09007 * 117.50109 * 214.98326 * 19 9 8 35 35 H 1.09001 * 117.49719 * 359.97381 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0323 -0.7104 1.2304 6 8 2.3024 -0.0769 2.2287 7 7 2.1762 -2.0505 1.2233 8 6 2.5597 -2.7525 2.4506 9 6 2.7717 -4.2365 2.1443 10 6 1.6068 -4.9392 1.4961 11 1 1.7827 -5.7150 0.7655 12 6 0.3165 -4.5918 1.8355 13 7 0.1011 -3.6042 2.6770 14 14 -1.1259 -5.5239 1.1005 15 1 -0.6192 -6.5811 0.1892 16 1 -1.9193 -6.1473 2.1900 17 1 -1.9857 -4.5836 0.3376 18 6 3.6293 -5.0440 3.1207 19 6 4.1788 -4.6802 1.7391 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 3.1300 1.4424 -0.0005 24 1 1.6766 1.9563 -0.8900 25 1 1.6767 1.9562 0.8900 26 1 1.6961 -0.2350 -2.0386 27 1 3.0262 -0.7626 -1.1910 28 1 2.0258 -2.5501 0.4057 29 1 3.4845 -2.3261 2.8393 30 1 1.7694 -2.6442 3.1934 31 1 -0.8015 -3.4065 2.9720 32 1 4.0429 -4.5179 3.9811 33 1 3.3512 -6.0835 3.2940 34 1 4.2620 -5.4807 1.0039 35 1 4.9534 -3.9149 1.6904 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404199025.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:15 Heat of formation + Delta-G solvation = -40.826093 kcal Electronic energy + Delta-G solvation = -16535.338626 eV Core-core repulsion = 13953.884634 eV Total energy + Delta-G solvation = -2581.453991 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.85361 -38.57983 -36.82185 -34.64917 -34.06858 -30.35417 -28.31352 -27.89712 -27.28243 -23.59506 -22.91629 -21.09363 -20.17929 -18.47888 -17.77883 -16.95904 -16.68719 -16.20816 -15.82826 -15.34314 -14.95288 -14.82332 -14.24006 -14.01150 -13.55813 -13.29867 -13.09926 -12.92389 -12.91181 -12.85286 -12.54908 -12.25997 -12.25144 -12.03429 -11.51428 -10.90109 -10.71021 -10.54316 -10.11894 -9.69703 -9.55657 -7.91839 -6.17361 1.43417 1.48394 1.57461 1.87082 2.44051 2.62784 3.10237 3.47522 3.64522 3.84983 4.09408 4.18489 4.28883 4.54675 4.67346 4.75966 4.78185 4.81123 4.81963 4.94633 4.96067 5.14384 5.16299 5.27225 5.33399 5.53399 5.62074 5.94110 6.00641 6.10809 6.40106 6.61910 6.81616 7.09862 7.47739 7.62748 8.94657 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.022702 B = 0.011050 C = 0.008701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.080701 B = 2533.250706 C = 3217.246503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.107 3.893 3 C -0.157 4.157 4 N -0.833 5.833 5 C 0.503 3.497 6 O -0.612 6.612 7 N -0.664 5.664 8 C 0.171 3.829 9 C 0.009 3.991 10 C -0.501 4.501 11 H 0.057 0.943 12 C 0.037 3.963 13 N -0.891 5.891 14 Si 0.950 3.050 15 H -0.268 1.268 16 H -0.287 1.287 17 H -0.281 1.281 18 C -0.201 4.201 19 C -0.187 4.187 20 H 0.051 0.949 21 H 0.096 0.904 22 H 0.046 0.954 23 H 0.053 0.947 24 H 0.092 0.908 25 H 0.053 0.947 26 H 0.362 0.638 27 H 0.349 0.651 28 H 0.410 0.590 29 H 0.012 0.988 30 H 0.079 0.921 31 H 0.257 0.743 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.763 5.654 -8.517 10.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.011 3.989 3 C -0.216 4.216 4 N -0.368 5.368 5 C 0.288 3.712 6 O -0.496 6.496 7 N -0.309 5.309 8 C 0.047 3.953 9 C 0.008 3.992 10 C -0.538 4.538 11 H 0.075 0.925 12 C -0.165 4.165 13 N -0.529 5.529 14 Si 0.777 3.223 15 H -0.193 1.193 16 H -0.214 1.214 17 H -0.207 1.207 18 C -0.239 4.239 19 C -0.224 4.224 20 H 0.070 0.930 21 H 0.115 0.885 22 H 0.066 0.934 23 H 0.072 0.928 24 H 0.111 0.889 25 H 0.072 0.928 26 H 0.178 0.822 27 H 0.162 0.838 28 H 0.246 0.754 29 H 0.030 0.970 30 H 0.097 0.903 31 H 0.066 0.934 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.103 0.897 35 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.357 5.556 -7.514 9.443 hybrid contribution -0.308 0.005 -0.266 0.407 sum 1.048 5.561 -7.780 9.620 Atomic orbital electron populations 1.21685 0.91628 1.02284 1.02988 1.20849 0.97019 0.92636 0.88390 1.22330 1.01156 0.94832 1.03309 1.58720 1.16965 1.57718 1.03372 1.21004 0.77421 0.82874 0.89857 1.90577 1.54352 1.67446 1.37179 1.45606 1.65595 1.06079 1.13666 1.20810 0.96667 0.89876 0.87985 1.19283 0.89605 0.91346 0.98937 1.20715 0.89850 1.19454 1.23813 0.92470 1.25575 1.00765 0.94816 0.95326 1.70057 1.21043 1.28278 1.33480 0.85628 0.79731 0.78773 0.78196 1.19251 1.21375 1.20742 1.22974 1.07506 1.00810 0.92628 1.22925 0.98435 1.03262 0.97776 0.93007 0.88545 0.93446 0.92813 0.88892 0.92810 0.82163 0.83779 0.75362 0.97021 0.90331 0.93356 0.90774 0.90264 0.89690 0.90045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.84 8.75 71.98 0.63 -3.21 16 2 C 0.11 3.29 1.16 2.78 0.00 3.29 16 3 C -0.16 -4.07 8.31 71.98 0.60 -3.47 16 4 N -0.83 -20.67 8.03 -154.53 -1.24 -21.92 16 5 C 0.50 21.38 6.62 87.65 0.58 21.96 16 6 O -0.61 -30.54 16.09 -3.02 -0.05 -30.59 16 7 N -0.66 -29.61 5.13 -463.07 -2.38 -31.99 16 8 C 0.17 8.48 4.62 86.38 0.40 8.88 16 9 C 0.01 0.43 2.06 -52.92 -0.11 0.32 16 10 C -0.50 -25.59 8.35 25.60 0.21 -25.38 16 11 H 0.06 2.91 7.82 -2.91 -0.02 2.89 16 12 C 0.04 1.87 5.33 84.65 0.45 2.33 16 13 N -0.89 -48.29 10.16 21.45 0.22 -48.07 16 14 Si 0.95 41.49 29.54 68.60 2.03 43.51 16 15 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 16 H -0.29 -12.63 7.11 99.48 0.71 -11.93 16 17 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 18 C -0.20 -8.77 9.96 30.62 0.30 -8.46 16 19 C -0.19 -7.65 9.93 30.62 0.30 -7.35 16 20 H 0.05 1.65 8.14 -2.39 -0.02 1.64 16 21 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 22 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 23 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 24 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16 25 H 0.05 1.59 7.87 -2.39 -0.02 1.58 16 26 H 0.36 6.54 9.00 -89.69 -0.81 5.74 16 27 H 0.35 8.19 8.98 -89.69 -0.81 7.38 16 28 H 0.41 17.93 7.24 -92.71 -0.67 17.26 16 29 H 0.01 0.58 8.06 -2.39 -0.02 0.56 16 30 H 0.08 4.49 5.85 -2.39 -0.01 4.48 16 31 H 0.26 13.60 8.32 -92.71 -0.77 12.82 16 32 H 0.07 3.08 8.14 -2.39 -0.02 3.07 16 33 H 0.08 3.43 8.14 -2.39 -0.02 3.41 16 34 H 0.08 3.32 8.14 -2.38 -0.02 3.30 16 35 H 0.08 3.10 8.14 -2.39 -0.02 3.08 16 Total: -1.00 -60.97 291.75 0.77 -60.20 By element: Atomic # 1 Polarization: 41.13 SS G_CDS: -1.18 Total: 39.94 kcal Atomic # 6 Polarization: -14.46 SS G_CDS: 3.38 Total: -11.09 kcal Atomic # 7 Polarization: -98.58 SS G_CDS: -3.40 Total: -101.98 kcal Atomic # 8 Polarization: -30.54 SS G_CDS: -0.05 Total: -30.59 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.51 kcal Total: -60.97 0.77 -60.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404199025.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.373 kcal (2) G-P(sol) polarization free energy of solvation -60.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds