Wall clock time and date at job start Mon Mar 30 2020 02:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86788 * 120.00409 * 2 1 4 4 H 1.48504 * 109.47561 * 239.99961 * 3 2 1 5 5 H 1.48497 * 109.47419 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47360 * 120.00166 * 3 2 1 7 7 C 1.37879 * 119.99533 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00130 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99944 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.46938 * 184.82575 * 9 7 2 11 11 C 1.46592 * 111.00432 * 298.40440 * 10 9 7 12 12 C 1.53692 * 111.03400 * 179.87812 * 11 10 9 13 13 N 1.45626 * 107.51459 * 303.77137 * 12 11 10 14 14 C 1.47334 * 117.76102 * 180.68736 * 13 12 11 15 15 C 1.55285 * 103.84494 * 198.17003 * 14 13 12 16 16 H 1.08994 * 110.35227 * 264.77001 * 15 14 13 17 17 O 1.42898 * 110.43996 * 142.53067 * 15 14 13 18 18 C 1.55065 * 104.91076 * 23.62910 * 15 14 13 19 19 C 1.48867 * 108.88819 * 63.52776 * 13 12 11 20 20 H 1.09002 * 110.30758 * 51.73996 * 19 13 12 21 21 C 1.47591 * 110.99682 * 64.56022 * 10 9 7 22 22 H 0.97009 * 119.99454 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.47090 * 64.83100 * 9 7 2 24 24 H 1.09001 * 109.47205 * 304.82639 * 9 7 2 25 25 H 1.09004 * 109.16046 * 300.27827 * 11 10 9 26 26 H 1.08990 * 109.16824 * 59.47327 * 11 10 9 27 27 H 1.09003 * 109.85050 * 184.26859 * 12 11 10 28 28 H 1.09003 * 109.90977 * 63.30836 * 12 11 10 29 29 H 1.08994 * 110.80762 * 79.36087 * 14 13 12 30 30 H 1.08998 * 110.04075 * 316.60995 * 14 13 12 31 31 H 0.96698 * 114.00038 * 64.45990 * 17 15 14 32 32 H 1.09006 * 110.50597 * 244.14494 * 18 15 14 33 33 H 1.08993 * 110.51161 * 121.44639 * 18 15 14 34 34 H 1.09004 * 109.86998 * 296.87293 * 21 10 9 35 35 H 1.09000 * 109.87121 * 57.91980 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2508 -2.4992 -0.0005 10 7 2.2011 -3.6134 0.1154 11 6 3.1225 -3.6389 -1.0246 12 6 4.1190 -4.8026 -0.9025 13 7 4.8057 -4.6594 0.3737 14 6 5.8328 -5.6587 0.7162 15 6 6.0016 -5.5065 2.2523 16 1 6.8344 -4.8404 2.4780 17 8 6.2084 -6.7829 2.8606 18 6 4.6671 -4.8861 2.7409 19 6 3.8120 -4.7958 1.4737 20 1 3.2291 -5.7079 1.3460 21 6 2.9024 -3.5775 1.4135 22 1 -0.4850 0.8402 0.0004 23 1 0.6903 -2.5950 -0.9304 24 1 0.5612 -2.5205 0.8433 25 1 2.5498 -3.7532 -1.9450 26 1 3.6727 -2.6988 -1.0611 27 1 4.8408 -4.7589 -1.7181 28 1 3.5855 -5.7527 -0.9311 29 1 6.7699 -5.4422 0.2035 30 1 5.4789 -6.6588 0.4660 31 1 7.0287 -7.2185 2.5917 32 1 4.8376 -3.8935 3.1581 33 1 4.1916 -5.5341 3.4770 34 1 3.4972 -2.6671 1.4883 35 1 2.1780 -3.6156 2.2271 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000405323546.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:50 Heat of formation + Delta-G solvation = -33.802733 kcal Electronic energy + Delta-G solvation = -16375.946562 eV Core-core repulsion = 13794.797127 eV Total energy + Delta-G solvation = -2581.149436 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.75879 -37.02003 -35.00471 -32.50066 -31.88981 -29.23565 -27.70972 -26.14884 -23.64102 -22.43155 -21.26107 -20.30175 -19.25447 -17.51025 -16.38686 -15.69466 -14.99462 -14.65897 -14.46381 -14.13096 -13.92588 -13.30995 -13.08642 -12.82719 -12.35333 -11.93785 -11.67657 -11.48915 -11.07665 -10.85570 -10.84343 -10.59328 -10.47736 -10.25919 -10.04644 -9.94382 -9.78766 -9.51955 -8.40398 -8.16481 -7.10638 -5.99617 -4.08629 3.30999 3.35637 3.38630 3.93647 4.41858 4.44023 4.65466 4.82403 5.02654 5.11008 5.30316 5.45085 5.55420 5.60248 5.69146 5.79031 5.89291 6.01073 6.03957 6.11067 6.28406 6.30610 6.63746 6.78567 6.87985 7.10822 7.30020 7.45404 7.54995 7.56912 7.92703 8.09009 8.31046 8.35420 9.01890 9.58021 11.05208 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.039888 B = 0.006913 C = 0.006657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.789082 B = 4049.335404 C = 4204.984953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.064 3.936 3 Si 0.890 3.110 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.548 4.548 8 H 0.059 0.941 9 C 0.190 3.810 10 N -0.552 5.552 11 C 0.069 3.931 12 C 0.060 3.940 13 N -0.526 5.526 14 C 0.013 3.987 15 C 0.100 3.900 16 H 0.067 0.933 17 O -0.566 6.566 18 C -0.108 4.108 19 C 0.065 3.935 20 H 0.054 0.946 21 C 0.081 3.919 22 H 0.262 0.738 23 H 0.027 0.973 24 H 0.034 0.966 25 H 0.067 0.933 26 H 0.049 0.951 27 H 0.070 0.930 28 H 0.034 0.966 29 H 0.077 0.923 30 H 0.045 0.955 31 H 0.375 0.625 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.052 0.948 35 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.146 -10.535 2.262 15.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.138 4.138 3 Si 0.717 3.283 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.587 4.587 8 H 0.077 0.923 9 C 0.064 3.936 10 N -0.277 5.277 11 C -0.060 4.060 12 C -0.068 4.068 13 N -0.252 5.252 14 C -0.115 4.115 15 C 0.041 3.959 16 H 0.085 0.915 17 O -0.370 6.370 18 C -0.146 4.146 19 C -0.043 4.043 20 H 0.072 0.928 21 C -0.047 4.047 22 H 0.072 0.928 23 H 0.045 0.955 24 H 0.052 0.948 25 H 0.085 0.915 26 H 0.067 0.933 27 H 0.088 0.912 28 H 0.052 0.948 29 H 0.095 0.905 30 H 0.063 0.937 31 H 0.221 0.779 32 H 0.102 0.898 33 H 0.098 0.902 34 H 0.070 0.930 35 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 10.376 -10.204 2.447 14.757 hybrid contribution 1.105 0.854 -0.443 1.465 sum 11.481 -9.349 2.004 14.941 Atomic orbital electron populations 1.69941 1.06017 1.26885 1.50273 1.24961 0.94753 0.99118 0.94968 0.86698 0.79655 0.83273 0.78637 1.20295 1.21260 1.20272 1.21746 0.93434 0.92038 1.51502 0.92335 1.19698 0.90724 0.85385 0.97750 1.62159 1.17778 1.47202 1.00514 1.21879 0.93182 0.96347 0.94549 1.22160 0.95628 0.98449 0.90560 1.63823 1.11425 1.46790 1.03157 1.23563 0.96861 0.94692 0.96422 1.22877 0.98288 0.84174 0.90576 0.91497 1.86559 1.45948 1.33780 1.70761 1.22147 0.93791 1.01129 0.97572 1.22524 0.92604 0.99257 0.89934 0.92782 1.21758 0.95090 0.95102 0.92777 0.92802 0.95477 0.94779 0.91504 0.93306 0.91202 0.94823 0.90471 0.93705 0.77870 0.89820 0.90151 0.93024 0.91377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.41 13.29 55.43 0.74 -25.67 16 2 C 0.06 1.82 5.46 -17.82 -0.10 1.73 16 3 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.55 -15.20 7.64 -34.44 -0.26 -15.46 16 8 H 0.06 1.63 5.98 -52.49 -0.31 1.31 16 9 C 0.19 4.95 5.10 -4.97 -0.03 4.93 16 10 N -0.55 -12.16 4.81 -235.82 -1.13 -13.30 16 11 C 0.07 1.39 5.36 -3.63 -0.02 1.37 16 12 C 0.06 0.99 6.08 -4.15 -0.03 0.97 16 13 N -0.53 -8.53 4.86 -224.23 -1.09 -9.62 16 14 C 0.01 0.17 6.51 -2.38 -0.02 0.16 16 15 C 0.10 1.23 4.47 -24.43 -0.11 1.12 16 16 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 17 O -0.57 -6.48 13.31 -35.23 -0.47 -6.94 16 18 C -0.11 -1.54 6.47 -25.57 -0.17 -1.70 16 19 C 0.07 1.09 2.59 -66.98 -0.17 0.92 16 20 H 0.05 0.95 8.00 -51.93 -0.42 0.54 16 21 C 0.08 1.64 4.93 -3.87 -0.02 1.62 16 22 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 23 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.03 0.95 8.13 -51.93 -0.42 0.53 16 25 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 26 H 0.05 1.09 6.43 -51.93 -0.33 0.75 16 27 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 28 H 0.03 0.55 8.02 -51.93 -0.42 0.13 16 29 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.04 0.58 8.10 -51.93 -0.42 0.16 16 31 H 0.37 2.52 9.12 45.56 0.42 2.93 16 32 H 0.08 1.17 8.02 -51.93 -0.42 0.76 16 33 H 0.08 1.11 8.00 -51.93 -0.42 0.70 16 34 H 0.05 1.15 7.00 -51.93 -0.36 0.78 16 35 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 275.70 15.07 4.15 4.15 Total: -1.00 -30.52 275.70 -8.51 -39.03 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -4.77 Total: 0.08 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: -0.91 Total: -4.36 kcal Atomic # 7 Polarization: -47.10 SS G_CDS: -1.49 Total: -48.58 kcal Atomic # 8 Polarization: -6.48 SS G_CDS: -0.47 Total: -6.94 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -30.52 -8.51 -39.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405323546.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.223 kcal (2) G-P(sol) polarization free energy of solvation -30.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds