Wall clock time and date at job start Mon Mar 30 2020 03:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48500 * 109.46986 * 270.00107 * 3 2 1 5 5 H 1.48496 * 109.47029 * 30.00124 * 3 2 1 6 6 H 1.48499 * 109.47352 * 149.99954 * 3 2 1 7 7 C 1.37885 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99806 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99686 * 179.72339 * 7 2 1 10 10 N 1.46904 * 109.46891 * 180.02562 * 9 7 2 11 11 C 1.46978 * 110.99753 * 293.70514 * 10 9 7 12 12 C 1.53021 * 109.28983 * 176.70496 * 11 10 9 13 13 N 1.46984 * 109.45888 * 58.51203 * 12 11 10 14 14 C 1.47042 * 110.67292 * 177.37932 * 13 12 11 15 15 C 1.53063 * 109.36895 * 181.85395 * 14 13 12 16 16 O 1.43039 * 109.16751 * 303.02412 * 15 14 13 17 17 C 1.42982 * 113.64050 * 58.91198 * 16 15 14 18 18 C 1.47010 * 110.91285 * 300.83162 * 13 12 11 19 19 H 1.09001 * 109.54297 * 298.86809 * 18 13 12 20 20 C 1.46923 * 111.00235 * 170.00219 * 10 9 7 21 21 H 0.97000 * 119.99706 * 359.97438 * 1 2 3 22 22 H 1.08998 * 109.47683 * 300.00180 * 9 7 2 23 23 H 1.09001 * 109.47048 * 60.00389 * 9 7 2 24 24 H 1.08998 * 109.50250 * 296.64808 * 11 10 9 25 25 H 1.08991 * 109.49941 * 56.76032 * 11 10 9 26 26 H 1.09006 * 109.47717 * 298.51406 * 12 11 10 27 27 H 1.09004 * 109.47772 * 178.50650 * 12 11 10 28 28 H 1.09002 * 109.48548 * 301.82339 * 14 13 12 29 29 H 1.09002 * 109.48755 * 61.88288 * 14 13 12 30 30 H 1.08993 * 109.52486 * 62.93461 * 15 14 13 31 31 H 1.09000 * 109.51716 * 183.12068 * 15 14 13 32 32 H 1.08998 * 109.49069 * 181.27066 * 17 16 15 33 33 H 1.09003 * 109.48712 * 61.21189 * 17 16 15 34 34 H 1.09001 * 109.47194 * 303.21164 * 20 10 9 35 35 H 1.09005 * 109.47428 * 63.21129 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 -0.0058 10 7 4.0012 -2.5790 -0.0045 11 6 3.6620 -3.2564 1.2550 12 6 4.1161 -4.7159 1.1823 13 7 5.5644 -4.7664 0.9367 14 6 6.0405 -6.1575 0.9238 15 6 7.5564 -6.1733 0.7124 16 8 7.8683 -5.4857 -0.5024 17 6 7.4248 -4.1266 -0.5221 18 6 5.9077 -4.0845 -0.3196 19 1 5.4111 -4.5825 -1.1523 20 6 5.4493 -2.6258 -0.2485 21 1 -0.4850 0.8401 0.0004 22 1 3.8712 -0.6827 -0.8987 23 1 3.8785 -0.6777 0.8813 24 1 4.1669 -2.7591 2.0831 25 1 2.5838 -3.2181 1.4097 26 1 3.5920 -5.2196 0.3700 27 1 3.8898 -5.2144 2.1249 28 1 5.8010 -6.6326 1.8752 29 1 5.5546 -6.7007 0.1133 30 1 8.0461 -5.6751 1.5490 31 1 7.9042 -7.2043 0.6471 32 1 7.6761 -3.6759 -1.4822 33 1 7.9141 -3.5727 0.2791 34 1 5.6751 -2.1276 -1.1914 35 1 5.9713 -2.1200 0.5638 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000612534794.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:57 Heat of formation + Delta-G solvation = -52.501748 kcal Electronic energy + Delta-G solvation = -16373.600570 eV Core-core repulsion = 13791.640284 eV Total energy + Delta-G solvation = -2581.960286 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.13903 -38.68684 -36.14571 -34.58921 -33.11549 -31.48801 -29.64560 -26.88359 -26.04698 -24.15558 -23.34497 -21.62580 -20.82301 -18.99274 -17.55666 -17.20602 -16.78961 -16.43544 -15.86539 -15.71000 -15.65137 -15.41576 -15.10534 -14.68409 -14.43007 -13.56764 -13.20019 -12.99279 -12.76091 -12.66855 -12.44735 -12.38902 -12.18754 -11.88337 -11.69554 -11.50427 -11.32879 -10.79881 -10.57539 -9.47206 -9.10135 -8.30066 -6.34072 1.34494 1.35821 1.46578 2.33270 2.69894 2.90295 3.02694 3.14290 3.81937 3.87138 3.93887 4.09491 4.21536 4.32439 4.32770 4.41127 4.50766 4.60267 4.67367 4.69857 4.77979 4.81636 4.86564 4.94643 4.98878 5.11228 5.12295 5.49772 5.85226 5.89951 6.01211 6.14883 6.29916 6.60524 6.71506 7.29724 8.86459 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.053053 B = 0.006599 C = 0.006083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.643953 B = 4242.099574 C = 4602.027909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.009 3.991 3 Si 0.949 3.051 4 H -0.264 1.264 5 H -0.281 1.281 6 H -0.252 1.252 7 C -0.519 4.519 8 H 0.037 0.963 9 C 0.173 3.827 10 N -0.547 5.547 11 C 0.069 3.931 12 C 0.068 3.932 13 N -0.538 5.538 14 C 0.016 3.984 15 C 0.063 3.937 16 O -0.399 6.399 17 C 0.076 3.924 18 C 0.057 3.943 19 H 0.039 0.961 20 C 0.061 3.939 21 H 0.267 0.733 22 H 0.031 0.969 23 H -0.012 1.012 24 H 0.028 0.972 25 H 0.062 0.938 26 H 0.029 0.971 27 H 0.099 0.901 28 H 0.105 0.895 29 H 0.034 0.966 30 H 0.065 0.935 31 H 0.122 0.878 32 H 0.114 0.886 33 H 0.065 0.935 34 H 0.084 0.916 35 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.508 -9.650 2.362 19.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.188 4.188 3 Si 0.772 3.228 4 H -0.188 1.188 5 H -0.206 1.206 6 H -0.176 1.176 7 C -0.557 4.557 8 H 0.055 0.945 9 C 0.046 3.954 10 N -0.272 5.272 11 C -0.059 4.059 12 C -0.060 4.060 13 N -0.265 5.265 14 C -0.112 4.112 15 C -0.014 4.014 16 O -0.318 6.318 17 C -0.001 4.001 18 C -0.052 4.052 19 H 0.057 0.943 20 C -0.067 4.067 21 H 0.076 0.924 22 H 0.049 0.951 23 H 0.006 0.994 24 H 0.047 0.953 25 H 0.080 0.920 26 H 0.047 0.953 27 H 0.117 0.883 28 H 0.123 0.877 29 H 0.053 0.947 30 H 0.083 0.917 31 H 0.140 0.860 32 H 0.132 0.868 33 H 0.083 0.917 34 H 0.103 0.897 35 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 16.463 -9.637 2.211 19.204 hybrid contribution -0.771 0.975 0.144 1.252 sum 15.691 -8.662 2.355 18.077 Atomic orbital electron populations 1.70047 1.08134 1.28185 1.52395 1.25847 0.95610 1.03156 0.94217 0.85696 0.79279 0.78517 0.79337 1.18847 1.20649 1.17596 1.21228 0.90976 0.93278 1.50212 0.94501 1.19917 0.94330 0.86007 0.95108 1.62010 1.13023 1.17547 1.34611 1.21958 1.00102 0.93904 0.89949 1.22112 0.86996 0.95592 1.01284 1.62477 1.14474 1.15926 1.33587 1.22895 0.97222 0.88382 1.02684 1.22848 0.92917 0.98769 0.86853 1.87962 1.79672 1.24974 1.39174 1.22664 0.90427 0.83369 1.03660 1.22288 0.97487 0.94485 0.90952 0.94256 1.22129 0.87872 0.95533 1.01203 0.92358 0.95132 0.99394 0.95340 0.91971 0.95283 0.88319 0.87707 0.94727 0.91697 0.86015 0.86832 0.91655 0.89735 0.94538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.41 13.96 21.45 0.30 -59.11 16 2 C 0.01 0.54 5.47 84.66 0.46 1.00 16 3 Si 0.95 44.06 27.47 68.60 1.88 45.94 16 4 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 6 H -0.25 -10.99 6.54 99.48 0.65 -10.34 16 7 C -0.52 -30.31 9.02 25.60 0.23 -30.08 16 8 H 0.04 2.41 7.39 -2.92 -0.02 2.38 16 9 C 0.17 8.43 3.79 85.56 0.32 8.76 16 10 N -0.55 -23.29 4.70 -900.35 -4.23 -27.53 16 11 C 0.07 2.74 5.43 86.30 0.47 3.21 16 12 C 0.07 2.13 5.59 86.29 0.48 2.61 16 13 N -0.54 -15.05 4.70 -869.56 -4.09 -19.14 16 14 C 0.02 0.34 5.64 86.30 0.49 0.83 16 15 C 0.06 1.17 7.01 72.00 0.50 1.67 16 16 O -0.40 -9.54 10.83 -148.98 -1.61 -11.15 16 17 C 0.08 1.78 6.27 72.02 0.45 2.23 16 18 C 0.06 1.66 2.48 44.95 0.11 1.78 16 19 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 20 C 0.06 2.05 4.86 86.32 0.42 2.47 16 21 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 22 H 0.03 1.45 7.46 -2.39 -0.02 1.43 16 23 H -0.01 -0.56 7.17 -2.39 -0.02 -0.58 16 24 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.06 2.81 6.80 -2.39 -0.02 2.79 16 26 H 0.03 0.98 8.14 -2.38 -0.02 0.96 16 27 H 0.10 2.58 8.14 -2.38 -0.02 2.57 16 28 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 33 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.08 2.63 8.07 -2.39 -0.02 2.61 16 35 H 0.04 1.21 8.14 -2.38 -0.02 1.19 16 Total: -1.00 -67.56 272.74 -2.82 -70.39 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: 0.99 Total: 6.12 kcal Atomic # 6 Polarization: -9.48 SS G_CDS: 3.94 Total: -5.53 kcal Atomic # 7 Polarization: -97.74 SS G_CDS: -8.03 Total: -105.77 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: -1.61 Total: -11.15 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 1.88 Total: 45.94 kcal Total: -67.56 -2.82 -70.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612534794.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.885 kcal (2) G-P(sol) polarization free energy of solvation -67.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds