Wall clock time and date at job start Mon Mar 30 2020 03:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46840 * 2 1 4 4 H 1.08996 * 109.45194 * 304.96791 * 3 2 1 5 5 C 1.53040 * 109.45930 * 64.93388 * 3 2 1 6 6 C 1.53191 * 109.31303 * 181.38414 * 5 3 2 7 7 N 1.46928 * 108.77568 * 305.36278 * 6 5 3 8 8 C 1.34777 * 120.63251 * 233.58443 * 7 6 5 9 9 O 1.21689 * 120.00007 * 174.85206 * 8 7 6 10 10 C 1.46376 * 119.99658 * 354.85030 * 8 7 6 11 11 H 1.07996 * 120.00354 * 342.41148 * 10 8 7 12 12 C 1.40054 * 119.99889 * 162.41823 * 10 8 7 13 13 N 1.30665 * 119.99914 * 170.19045 * 12 10 8 14 14 Si 1.86802 * 119.99548 * 350.18598 * 12 10 8 15 15 H 1.48500 * 109.47186 * 84.77105 * 14 12 10 16 16 H 1.48499 * 109.46875 * 204.76370 * 14 12 10 17 17 H 1.48500 * 109.47399 * 324.76599 * 14 12 10 18 18 C 1.46927 * 118.73775 * 53.61053 * 7 6 5 19 19 C 1.53042 * 109.46116 * 184.99963 * 3 2 1 20 20 H 1.09008 * 109.50010 * 298.56617 * 19 3 2 21 21 N 1.46898 * 109.49994 * 58.66043 * 19 3 2 22 22 H 1.09003 * 109.46732 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47271 * 300.00023 * 1 2 3 24 24 H 1.08995 * 109.47311 * 60.00119 * 1 2 3 25 25 H 1.08993 * 109.47533 * 240.00457 * 2 1 3 26 26 H 1.08995 * 109.47311 * 119.99881 * 2 1 3 27 27 H 1.09000 * 109.50278 * 61.43544 * 5 3 2 28 28 H 1.08994 * 109.52503 * 301.35118 * 5 3 2 29 29 H 1.09000 * 109.59205 * 185.57409 * 6 5 3 30 30 H 1.09005 * 109.70455 * 65.22230 * 6 5 3 31 31 H 0.96999 * 119.99700 * 179.97438 * 13 12 10 32 32 H 1.08993 * 109.58697 * 186.60460 * 18 7 6 33 33 H 1.09000 * 109.58807 * 66.17656 * 18 7 6 34 34 H 1.00902 * 111.00526 * 179.83802 * 21 19 3 35 35 H 1.00897 * 110.99883 * 303.79976 * 21 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6055 1.9811 -0.8422 5 6 1.6334 2.1270 1.3071 6 6 2.1156 3.5809 1.2889 7 7 3.5606 3.5967 1.0235 8 6 4.4035 4.2472 1.8498 9 8 5.6053 4.1753 1.6729 10 6 3.8732 5.0402 2.9601 11 1 2.8363 5.3420 2.9613 12 6 4.7107 5.4076 4.0208 13 7 4.2970 6.2697 4.9114 14 14 6.4190 4.6652 4.1624 15 1 7.3675 5.4426 3.3250 16 1 6.8609 4.7070 5.5795 17 1 6.3866 3.2559 3.6953 18 6 4.0692 2.8904 -0.1602 19 6 3.5652 1.4442 -0.1258 20 1 4.0013 0.9272 0.7291 21 7 3.9557 0.7592 -1.3651 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8899 25 1 1.8934 -0.5137 -0.8899 26 1 1.8933 -0.5138 0.8899 27 1 2.0877 1.6037 2.1484 28 1 0.5484 2.1048 1.4078 29 1 1.9165 4.0442 2.2553 30 1 1.5941 4.1313 0.5056 31 1 4.8769 6.5239 5.6462 32 1 5.1591 2.8978 -0.1499 33 1 3.7069 3.3822 -1.0629 34 1 4.9590 0.7494 -1.4723 35 1 3.5797 -0.1767 -1.3949 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000616572924.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:54 Heat of formation + Delta-G solvation = -59.286186 kcal Electronic energy + Delta-G solvation = -16421.902061 eV Core-core repulsion = 13839.647580 eV Total energy + Delta-G solvation = -2582.254481 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.27462 -37.06782 -33.94626 -33.42257 -32.79288 -29.83124 -28.50461 -26.46024 -24.82604 -22.33564 -21.47284 -19.96959 -18.91991 -16.72999 -15.99284 -15.76430 -15.03782 -14.65452 -14.51796 -14.22604 -13.64290 -13.40402 -13.03529 -12.56767 -12.31064 -12.11717 -11.91287 -11.72035 -11.53672 -11.34543 -11.01374 -10.80278 -10.52810 -10.38856 -10.12940 -9.92651 -9.44270 -9.01171 -8.58449 -7.93648 -7.51986 -6.62117 -4.82029 3.44191 3.47309 3.69085 4.11267 4.22617 4.50981 4.74658 4.89498 4.95647 5.03688 5.38934 5.41101 5.54074 5.59037 5.68938 5.75343 5.79278 5.92633 6.00301 6.07902 6.24171 6.29814 6.35232 6.41821 6.43183 6.53037 6.71504 7.09163 7.24579 7.51802 7.68716 7.89359 8.33151 8.72731 9.15254 10.04570 10.39234 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.037588 B = 0.008123 C = 0.007283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.736101 B = 3446.112922 C = 3843.676696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C -0.078 4.078 4 H 0.075 0.925 5 C -0.130 4.130 6 C 0.119 3.881 7 N -0.630 5.630 8 C 0.556 3.444 9 O -0.618 6.618 10 C -0.534 4.534 11 H 0.091 0.909 12 C 0.103 3.897 13 N -0.829 5.829 14 Si 0.963 3.037 15 H -0.276 1.276 16 H -0.319 1.319 17 H -0.269 1.269 18 C 0.127 3.873 19 C 0.081 3.919 20 H 0.036 0.964 21 N -0.846 5.846 22 H 0.048 0.952 23 H 0.058 0.942 24 H 0.053 0.947 25 H 0.061 0.939 26 H 0.056 0.944 27 H 0.064 0.936 28 H 0.070 0.930 29 H 0.099 0.901 30 H 0.047 0.953 31 H 0.282 0.718 32 H 0.081 0.919 33 H 0.054 0.946 34 H 0.340 0.660 35 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.391 -11.014 -7.639 14.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.097 4.097 4 H 0.094 0.906 5 C -0.169 4.169 6 C -0.005 4.005 7 N -0.364 5.364 8 C 0.365 3.635 9 O -0.510 6.510 10 C -0.569 4.569 11 H 0.109 0.891 12 C -0.114 4.114 13 N -0.459 5.459 14 Si 0.795 3.205 15 H -0.202 1.202 16 H -0.251 1.251 17 H -0.195 1.195 18 C 0.002 3.998 19 C -0.031 4.031 20 H 0.054 0.946 21 N -0.377 5.377 22 H 0.067 0.933 23 H 0.077 0.923 24 H 0.072 0.928 25 H 0.080 0.920 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.089 0.911 29 H 0.117 0.883 30 H 0.065 0.935 31 H 0.092 0.908 32 H 0.100 0.900 33 H 0.073 0.927 34 H 0.152 0.848 35 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -6.223 -10.332 -7.946 14.443 hybrid contribution 1.044 -0.968 0.715 1.593 sum -5.179 -11.300 -7.231 14.381 Atomic orbital electron populations 1.21788 0.95867 1.01102 1.02042 1.21591 0.96048 0.96924 1.01320 1.21175 0.94348 0.95630 0.98527 0.90650 1.22057 1.00535 0.97177 0.97142 1.21509 0.81533 0.94915 1.02503 1.47673 1.06653 1.55228 1.26892 1.18366 0.84577 0.78446 0.82134 1.90213 1.16199 1.70306 1.74308 1.20751 0.99445 1.32456 1.04280 0.89117 1.25721 1.00629 0.91614 0.93485 1.69560 1.38670 1.25776 1.11849 0.85304 0.80947 0.81429 0.72784 1.20223 1.25052 1.19467 1.21133 1.00178 0.89807 0.88654 1.21728 0.95344 0.95859 0.90133 0.94622 1.58730 1.16847 1.23214 1.38908 0.93258 0.92327 0.92785 0.92028 0.92487 0.91763 0.91122 0.88328 0.93520 0.90832 0.90027 0.92733 0.84783 0.84915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.67 37.16 0.36 -1.13 16 2 C -0.12 -1.36 5.18 -26.73 -0.14 -1.50 16 3 C -0.08 -1.07 1.88 -90.58 -0.17 -1.24 16 4 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 5 C -0.13 -1.95 5.14 -26.61 -0.14 -2.08 16 6 C 0.12 2.19 6.28 -3.71 -0.02 2.17 16 7 N -0.63 -13.89 2.97 -174.43 -0.52 -14.41 16 8 C 0.56 15.04 7.21 -12.99 -0.09 14.95 16 9 O -0.62 -18.23 12.12 5.20 0.06 -18.17 16 10 C -0.53 -15.11 9.08 -35.63 -0.32 -15.43 16 11 H 0.09 2.54 6.42 -52.49 -0.34 2.21 16 12 C 0.10 2.96 5.52 -17.37 -0.10 2.87 16 13 N -0.83 -23.61 13.92 55.55 0.77 -22.84 16 14 Si 0.96 25.63 25.83 -169.99 -4.39 21.24 16 15 H -0.28 -7.60 7.11 56.52 0.40 -7.19 16 16 H -0.32 -8.00 7.11 56.52 0.40 -7.60 16 17 H -0.27 -7.48 6.82 56.52 0.39 -7.09 16 18 C 0.13 2.43 6.02 -3.71 -0.02 2.41 16 19 C 0.08 1.26 2.93 -67.59 -0.20 1.07 16 20 H 0.04 0.62 8.14 -51.92 -0.42 0.19 16 21 N -0.85 -10.72 9.21 -4.56 -0.04 -10.76 16 22 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 23 H 0.06 0.58 6.53 -51.93 -0.34 0.25 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.63 6.30 -51.93 -0.33 0.31 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.07 0.89 6.50 -51.93 -0.34 0.56 16 29 H 0.10 1.96 5.60 -51.93 -0.29 1.67 16 30 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.28 7.39 8.29 -40.82 -0.34 7.05 16 32 H 0.08 1.72 6.99 -51.93 -0.36 1.36 16 33 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.34 4.06 9.04 -39.29 -0.36 3.70 16 35 H 0.34 3.60 6.89 -39.29 -0.27 3.33 16 LS Contribution 271.71 15.07 4.09 4.09 Total: -1.00 -31.46 271.71 -6.02 -37.48 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -5.15 Total: 1.29 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: -0.84 Total: 2.07 kcal Atomic # 7 Polarization: -48.22 SS G_CDS: 0.21 Total: -48.01 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: 0.06 Total: -18.17 kcal Atomic # 14 Polarization: 25.63 SS G_CDS: -4.39 Total: 21.24 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -31.46 -6.02 -37.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000616572924.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.809 kcal (2) G-P(sol) polarization free energy of solvation -31.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds